Jatropha Genome Database

JcCA0138521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138521.10 - phase: 0 /partial
         (243 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g111910.1 DNA polymerase epsilon subunit B chr07_pseu...   377   e-105

>IMGA|Medtr7g111910.1 DNA polymerase epsilon subunit B
           chr07_pseudomolecule_IMGAG_V3 26395853-26403460 E
           EGN_Mt090430 20090702
          Length = 454

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/235 (78%), Positives = 207/235 (88%), Gaps = 2/235 (0%)

Query: 9   LQRKQAIYSSLDETFKIQKETYRGQQYSQIYFARLHMMRTLLYSLVPHWKNHLTVCTILG 68
            +R Q  Y SLDE+F+I KE YRGQQYSQIYFARLH+MRTLLYSLVPHWK +  VCT+LG
Sbjct: 5   FKRMQCSYESLDESFEIGKEMYRGQQYSQIYFARLHLMRTLLYSLVPHWKPNTPVCTVLG 64

Query: 69  LEEGKECIIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDYLVLEDESGRVKL 128
           LEEGKEC+IVGTL+K+MKLKPCILDEYSK+RS VP VK HNF+H DDYLVLEDESGRVKL
Sbjct: 65  LEEGKECVIVGTLFKNMKLKPCILDEYSKQRS-VP-VKSHNFVHEDDYLVLEDESGRVKL 122

Query: 129 GGDMLSPSAYVTGVVVALHGKETSAGDFLVLDVLEAGLAPQIELPLQPREDKYVVFVSGL 188
           GG ++ PS YVTG+VVALHGKET AGDFLV +VLEAGL PQIE P++ REDKYVV VSGL
Sbjct: 123 GGSIIVPSVYVTGIVVALHGKETGAGDFLVQEVLEAGLPPQIEFPIKSREDKYVVLVSGL 182

Query: 189 SLGSIRSNPLQFQLLVDHITGHLGDEQEQGIVAEIVHVVVAGNSVEIPVGLLNGQ 243
           S+GS +SNPLQFQLLVDHITGHLGDE+EQ I A+IV VV+AGNSVE+P GLLNGQ
Sbjct: 183 SVGSSKSNPLQFQLLVDHITGHLGDEKEQSIAAQIVRVVIAGNSVEMPRGLLNGQ 237