Jatropha Genome Database

JcCA0136621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0136621.10 - phase: 0 /partial
         (264 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100560.1 N-glycosylase/DNA lyase, related chr03_pseu...   259   9e-70
IMGA|Medtr4g144890.1 HhH-GPD; 8-oxoguanine DNA-glycosylase chr04...   258   2e-69

>IMGA|Medtr3g100560.1 N-glycosylase/DNA lyase, related
           chr03_pseudomolecule_IMGAG_V3 24115405-24112945 E
           EGN_Mt090430 20090702
          Length = 420

 Score =  259 bits (662), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 146/180 (81%), Gaps = 2/180 (1%)

Query: 66  STNWAPLGLIQAELFLPLTFPTGQTFRWKQTGPFQYTGTLGPHLISLKNHHENGNVYYHI 125
           S  W PL + + EL LPLTFPTGQTFRWK T P QYTG +G HLISLK+ H NG+V Y +
Sbjct: 37  SRAWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQYTGVVGSHLISLKHLH-NGDVCYTL 95

Query: 126 H-RSPSESAAKSALLDFLNIDISLTDMWAEFSVSDSRFSELARHLQGARVLRQDPLECLI 184
           H +SPS    K+ALLDFLN D+SL D W  FS SD RF+ELA+HL GARVLRQDP ECLI
Sbjct: 96  HSQSPSNDDCKTALLDFLNADVSLADTWKVFSDSDERFAELAQHLSGARVLRQDPFECLI 155

Query: 185 QFLCSSNNNIARITKMVDFISSLGEHLGNVEGFDFHEFPSLERLAMITEQQLREAGFGYR 244
           QF+CSSNN+I+RITKMVD++SSLG +LG VEGFDFH FP+L +L++++EQQLR+AGFGYR
Sbjct: 156 QFMCSSNNHISRITKMVDYVSSLGTYLGCVEGFDFHAFPTLNQLSLVSEQQLRDAGFGYR 215


>IMGA|Medtr4g144890.1 HhH-GPD; 8-oxoguanine DNA-glycosylase
           chr04_pseudomolecule_IMGAG_V3 36590678-36596814 H
           EGN_Mt090430 20090702
          Length = 420

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 146/180 (81%), Gaps = 2/180 (1%)

Query: 66  STNWAPLGLIQAELFLPLTFPTGQTFRWKQTGPFQYTGTLGPHLISLKNHHENGNVYYHI 125
           S  W PL + + EL LPLTFPTGQTFRWK T P QYTG +G HLISLK+ H NG+V Y +
Sbjct: 37  SRAWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQYTGVVGSHLISLKHLH-NGDVCYTL 95

Query: 126 H-RSPSESAAKSALLDFLNIDISLTDMWAEFSVSDSRFSELARHLQGARVLRQDPLECLI 184
           H +SPS    K+ALLDFLN D+SL D W  FS SD RF+ELA+HL GARVLRQDP ECLI
Sbjct: 96  HSQSPSNDDCKTALLDFLNADVSLADTWKVFSDSDERFAELAQHLSGARVLRQDPFECLI 155

Query: 185 QFLCSSNNNIARITKMVDFISSLGEHLGNVEGFDFHEFPSLERLAMITEQQLREAGFGYR 244
           QF+CSSNN+I+RITKMVD++SSLG +LG VEGFDFH FP+L +L++++EQQLR+AGFGYR
Sbjct: 156 QFMCSSNNHISRITKMVDYVSSLGTYLGCVEGFDFHAFPTLNQLSLVSEQQLRDAGFGYR 215