Jatropha Genome Database

JcCA0134821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134821.20 + phase: 2 /partial
         (262 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g073580.1 DAHP synthetase, class II chr05_pseudomolec...   517   e-147
IMGA|Medtr2g009150.1 DAHP synthetase, class II chr02_pseudomolec...   491   e-139
IMGA|Medtr5g073580.2 DAHP synthetase, class II chr05_pseudomolec...   357   5e-99

>IMGA|Medtr5g073580.1 DAHP synthetase, class II
           chr05_pseudomolecule_IMGAG_V3 26473461-26477980 E
           EGN_Mt090430 20090702
          Length = 532

 Score =  517 bits (1332), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 242/257 (94%), Positives = 252/257 (98%)

Query: 1   YKELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDC 60
           Y+ELA+RVDEALGFM+AAGLTVDHPIM TT+FWTSHECLLLPYEQSLTRLDSTSGLYYDC
Sbjct: 271 YRELANRVDEALGFMAAAGLTVDHPIMRTTDFWTSHECLLLPYEQSLTRLDSTSGLYYDC 330

Query: 61  SAHFLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 120
           SAH +WVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI
Sbjct: 331 SAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 390

Query: 121 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAF 180
           ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFD+IRAEVRAF
Sbjct: 391 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAF 450

Query: 181 FDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF 240
           FDVH+QEGSHPGGVHLEMTGQNVTECIGGS+ VTFDDLSSRYHTHCDPRLNASQSLELAF
Sbjct: 451 FDVHEQEGSHPGGVHLEMTGQNVTECIGGSKIVTFDDLSSRYHTHCDPRLNASQSLELAF 510

Query: 241 IIAERLRKRRIKSQPSI 257
           IIAERLRK RI+SQP +
Sbjct: 511 IIAERLRKSRIRSQPPL 527


>IMGA|Medtr2g009150.1 DAHP synthetase, class II
           chr02_pseudomolecule_IMGAG_V3 1948320-1942930 E
           EGN_Mt090430 20090702
          Length = 510

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 228/258 (88%), Positives = 243/258 (94%)

Query: 1   YKELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDC 60
           Y+ELAHRVDEALGFMS AG+T DHPIMTTT+FWTSHECLLLPYEQ+LTR DSTSGL+YDC
Sbjct: 248 YRELAHRVDEALGFMSVAGITSDHPIMTTTDFWTSHECLLLPYEQALTREDSTSGLHYDC 307

Query: 61  SAHFLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 120
           SAH LWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDP ELVKLI+ILNP NKPGRIT+
Sbjct: 308 SAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPKELVKLIDILNPNNKPGRITV 367

Query: 121 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAF 180
           I RMGAENMRVKLPHLIRAVR AGQIV WVSDPMHGNTIKAP GLKTR FDSIRAE+RAF
Sbjct: 368 IVRMGAENMRVKLPHLIRAVRNAGQIVAWVSDPMHGNTIKAPSGLKTRSFDSIRAELRAF 427

Query: 181 FDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAF 240
           FDVH+QEGS+PGGVHLEMTGQNVTEC+GGSRT+TFDDLSSRYHTHCDPRLNASQSLELAF
Sbjct: 428 FDVHEQEGSYPGGVHLEMTGQNVTECVGGSRTITFDDLSSRYHTHCDPRLNASQSLELAF 487

Query: 241 IIAERLRKRRIKSQPSIA 258
            IAERLRKRR+ S  S++
Sbjct: 488 AIAERLRKRRLNSTQSLS 505


>IMGA|Medtr5g073580.2 DAHP synthetase, class II
           chr05_pseudomolecule_IMGAG_V3 26473461-26476835 E
           EGN_Mt090430 20090702
          Length = 454

 Score =  357 bits (915), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 166/174 (95%), Positives = 172/174 (98%)

Query: 1   YKELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDC 60
           Y+ELA+RVDEALGFM+AAGLTVDHPIM TT+FWTSHECLLLPYEQSLTRLDSTSGLYYDC
Sbjct: 271 YRELANRVDEALGFMAAAGLTVDHPIMRTTDFWTSHECLLLPYEQSLTRLDSTSGLYYDC 330

Query: 61  SAHFLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 120
           SAH +WVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI
Sbjct: 331 SAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 390

Query: 121 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIR 174
           ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFD+IR
Sbjct: 391 ITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIR 444