Jatropha Genome Database
- JcCA0134721.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0134721.20 + phase: 1 /TE
(808 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 418 e-117
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc... 288 1e-77
IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse transc... 261 6e-70
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 247 2e-65
IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse transc... 239 4e-63
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 211 8e-55
IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse transc... 204 2e-52
IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse transcri... 203 3e-52
IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase... 202 7e-52
IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse transcri... 197 2e-50
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc... 192 7e-49
IMGA|Medtr8g024620.1 hypothetical protein chr08_pseudomolecule_I... 189 6e-48
IMGA|AC225611_8.1 contains similarity to reverse trancriptase, r... 182 7e-46
IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse transc... 173 3e-43
IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase... 171 9e-43
IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse transc... 167 1e-41
IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse transc... 167 1e-41
IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse transc... 164 2e-40
IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H... 163 2e-40
IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse transc... 159 5e-39
IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse transc... 156 4e-38
IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse transc... 155 5e-38
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 155 7e-38
IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse transc... 155 8e-38
IMGA|Medtr8g105650.1 reverse transcriptase, putative; 100033-105... 151 1e-36
IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse transc... 146 5e-35
IMGA|Medtr1g117580.1 hypothetical protein chr01_pseudomolecule_I... 142 8e-34
IMGA|Medtr5g029030.1 RNA-directed DNA polymerase (reverse transc... 140 3e-33
IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse transc... 136 4e-32
IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse transc... 136 4e-32
IMGA|Medtr2g111140.1 RNA-directed DNA polymerase (reverse transc... 133 3e-31
IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse transc... 132 5e-31
IMGA|Medtr8g037100.1 hypothetical protein chr08_pseudomolecule_I... 131 1e-30
IMGA|Medtr3g044190.1 RNA-directed DNA polymerase (reverse transc... 130 3e-30
IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse transc... 129 4e-30
IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse transc... 124 2e-28
IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750, ... 124 2e-28
IMGA|Medtr2g114260.1 hypothetical protein chr02_pseudomolecule_I... 124 2e-28
IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putat... 123 4e-28
IMGA|Medtr4g084360.1 Putative ribonuclease H protein At1g65750, ... 119 4e-27
IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse transc... 116 4e-26
IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse transcri... 113 4e-25
IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H... 109 4e-24
IMGA|Medtr5g088270.1 RNA-directed DNA polymerase (reverse transc... 103 3e-22
IMGA|Medtr3g125040.1 RNA-directed DNA polymerase (reverse transc... 103 4e-22
IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse transc... 101 1e-21
IMGA|Medtr7g084960.1 RNA-directed DNA polymerase (reverse transc... 95 1e-19
IMGA|Medtr3g009350.1 RNA-directed DNA polymerase (reverse transc... 95 2e-19
IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse transc... 94 2e-19
IMGA|AC233668_8.1 RNA-directed DNA polymerase (reverse transcrip... 92 9e-19
IMGA|Medtr4g013050.1 hypothetical protein chr04_pseudomolecule_I... 91 3e-18
IMGA|Medtr4g012970.1 hypothetical protein chr04_pseudomolecule_I... 91 3e-18
IMGA|Medtr4g140270.1 RNA-directed DNA polymerase ; Ribonuclease ... 87 3e-17
IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse transc... 87 3e-17
IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V... 86 5e-17
IMGA|Medtr2g100610.1 RNA-directed DNA polymerase (reverse transc... 86 6e-17
IMGA|Medtr2g100360.1 RNA-directed DNA polymerase (reverse transc... 86 7e-17
IMGA|Medtr7g068050.1 hypothetical protein chr07_pseudomolecule_I... 85 1e-16
IMGA|Medtr4g084370.1 contains similarity to reverse trancriptase... 84 2e-16
IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse transc... 84 3e-16
IMGA|Medtr1g122150.1 contains similarity to reverse trancriptase... 83 5e-16
IMGA|Medtr3g024330.1 RNA-directed DNA polymerase (reverse transc... 83 6e-16
IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse transcri... 82 8e-16
IMGA|AC146793_2.1 RNA-directed DNA polymerase, related AC146793.... 81 3e-15
IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse transc... 80 6e-15
IMGA|Medtr5g073420.1 RNA-directed DNA polymerase (reverse transc... 76 6e-14
IMGA|Medtr1g009220.1 contains similarity to reverse trancriptase... 76 6e-14
IMGA|Medtr4g160470.1 RNA-directed DNA polymerase, related, putat... 76 7e-14
IMGA|Medtr6g024980.1 Putative ribonuclease H protein At1g65750, ... 76 7e-14
IMGA|Medtr5g021560.1 RNA-directed DNA polymerase (reverse transc... 75 2e-13
IMGA|Medtr1g122160.1 contains similarity to reverse trancriptase... 75 2e-13
IMGA|Medtr3g043440.1 Polynucleotidyl transferase, Ribonuclease H... 74 4e-13
IMGA|Medtr3g103220.1 RNA-directed DNA polymerase (reverse transc... 73 4e-13
IMGA|Medtr7g127430.1 hypothetical protein chr07_pseudomolecule_I... 72 1e-12
IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V... 72 1e-12
IMGA|Medtr4g084240.1 Polynucleotidyl transferase, Ribonuclease H... 71 2e-12
IMGA|Medtr5g088710.1 RNA-directed DNA polymerase (reverse transc... 70 3e-12
IMGA|Medtr2g095450.1 RNA-directed DNA polymerase (reverse transc... 70 6e-12
IMGA|Medtr4g129960.1 Polynucleotidyl transferase, Ribonuclease H... 69 8e-12
IMGA|Medtr5g083860.1 RNA-directed DNA polymerase (reverse transc... 68 2e-11
IMGA|Medtr5g025230.1 RNA-directed DNA polymerase (reverse transc... 66 5e-11
IMGA|Medtr4g042860.1 contains similarity to reverse trancriptase... 66 6e-11
IMGA|Medtr2g095830.1 Lipocalin chr02_pseudomolecule_IMGAG_V3 220... 65 2e-10
IMGA|Medtr7g077130.1 RNA-directed DNA polymerase (reverse transc... 65 2e-10
IMGA|Medtr2g055540.1 RNA-directed DNA polymerase (reverse transc... 64 3e-10
IMGA|Medtr4g107070.1 Polynucleotidyl transferase, Ribonuclease H... 61 3e-09
IMGA|Medtr6g009380.1 hypothetical protein chr06_pseudomolecule_I... 60 4e-09
IMGA|Medtr5g084580.1 RNA-directed DNA polymerase (reverse transc... 60 4e-09
IMGA|Medtr4g134320.1 RNA-directed DNA polymerase, related, relat... 59 7e-09
IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H... 59 1e-08
IMGA|AC233668_9.1 RNA-directed DNA polymerase (reverse transcrip... 58 1e-08
IMGA|Medtr3g013410.1 RNA-directed DNA polymerase (reverse transc... 57 3e-08
IMGA|Medtr4g160710.1 RNA-directed DNA polymerase, related, putat... 57 4e-08
IMGA|Medtr1g107130.1 hypothetical protein chr01_pseudomolecule_I... 57 5e-08
IMGA|Medtr1g087030.1 RNA-directed DNA polymerase (Reverse transc... 56 6e-08
IMGA|Medtr1g149770.1 contains similarity to reverse trancriptase... 55 1e-07
IMGA|AC233571_22.1 hypothetical protein AC233571.2 95791-97088 H... 55 1e-07
IMGA|AC235675_13.1 RNA-directed DNA polymerase (reverse transcri... 55 2e-07
IMGA|Medtr2g129530.1 RNA-directed DNA polymerase (reverse transc... 54 4e-07
IMGA|Medtr8g112180.1 hypothetical protein chr08_pseudomolecule_I... 53 5e-07
IMGA|Medtr6g031230.1 DEAD-box ATP-dependent RNA helicase 12, put... 52 9e-07
IMGA|Medtr3g030650.1 RNA-directed DNA polymerase (reverse transc... 52 9e-07
IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse transcri... 52 1e-06
IMGA|Medtr7g068430.1 RNA-directed DNA polymerase (reverse transc... 52 1e-06
IMGA|Medtr6g031330.1 DEAD/DEAH box helicase, N-terminal chr06_ps... 52 2e-06
IMGA|Medtr8g088300.1 Non-LTR retroelement reverse transcriptase,... 51 2e-06
IMGA|Medtr5g105670.1 Polynucleotidyl transferase, Ribonuclease H... 51 3e-06
IMGA|Medtr2g104180.1 RNA-directed DNA polymerase (reverse transc... 50 5e-06
IMGA|Medtr1g064980.1 RNA-directed DNA polymerase ; Ribonuclease ... 50 6e-06
IMGA|Medtr3g086350.1 N-6 Adenine-specific DNA methylase chr03_ps... 49 9e-06
IMGA|Medtr3g103760.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 49 9e-06
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/516 (41%), Positives = 311/516 (60%), Gaps = 44/516 (8%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
R ++DN+ + E+IH +K + G +G ALK+DI K YDRV+W YL ++M+ +GF+ W+
Sbjct: 365 RTITDNILIALEIIHYLKCKTWGIKGEAALKIDISKTYDRVDWNYLFSIMEKMGFNPIWI 424
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
+ + V+ V Y V VN D VGPI P RGLRQG PLSPYLF+LCAEG+S L ++ER
Sbjct: 425 KWMRMSVTMVSYHVLVNDDRVGPIYPGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNI 484
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFF 183
L G +V + AP +SHLLFADDS FF ++ + +K+IL TY AS Q +N QKS I+F
Sbjct: 485 LHGVKVCKRAPTVSHLLFADDSFLFFRANENETRALKDILDTYANASDQLINMQKSEIYF 544
Query: 184 SSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKL 243
S N K ++ + V + +YLGLPS+IGR ++ +F+++KD + +SG + K+
Sbjct: 545 SRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSKM 604
Query: 244 LSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWG------GKMRWLSWE 297
LS+AGKEVLIK+VAQAIPS+CMS FL+P SI ++++++N +WWG G +RW+SWE
Sbjct: 605 LSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIRWMSWE 664
Query: 298 RLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGR 357
RL + KE GG+GFRH+ F+LA+ GK CW L +++ + NFLGA +G
Sbjct: 665 RLTMRKEWGGMGFRHIHGFDLAMSGKQCWNFLTNPDAMVSRIFKAKYFTNENFLGASLGH 724
Query: 358 NPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVS 417
NPS+VWR I +++ + +G++WRIGDG + VS
Sbjct: 725 NPSYVWRSIWSSRIFLKTGYQWRIGDGSTTAT--------------------------VS 758
Query: 418 DLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRI 477
LI R+WN PLI FN + I IPL Q+D +IW + G+YSVK+ YR+
Sbjct: 759 HLIDAQ-TRSWNEPLIRNNFNLRDVDEILKIPLLHCEQNDAIIWRFDKKGVYSVKNAYRV 817
Query: 478 VASQYVDTEDAW-----RSRFWK-----TLCHFKFR 503
++ D W R++ W + HF +R
Sbjct: 818 CVDVLIN-RDEWKVEGDRNKLWSLPIPPKVKHFMWR 852
>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
E EGN_Mt090430 20090702
Length = 566
Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 254/466 (54%), Gaps = 55/466 (11%)
Query: 84 VGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFAD 143
VGPI+P RGLRQG PLSPYLF+L EGLS L K G + G +V R AP +SHLLFAD
Sbjct: 4 VGPIVPGRGLRQGDPLSPYLFILVVEGLSTLIHKEVNRGDIHGVKVCRGAPVVSHLLFAD 63
Query: 144 DSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVTGVFSVIA 203
+ F + +A + IL TYEAASGQ +N KS +FFS N S + ++ + V
Sbjct: 64 NCFLFCRANVVEAQRLLTILKTYEAASGQEINLSKSEVFFSRNMSGAAQEDLSRIIGVRH 123
Query: 204 PLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSF 263
+ G+YLGLPS+I R++ VFSF+KD + K ++ W + LSKAGKEV+IK+V Q+IPS+
Sbjct: 124 VMGTGKYLGLPSMIDRDKWSVFSFIKDSIWKRINVWRGRALSKAGKEVMIKSVLQSIPSY 183
Query: 264 CMSSFLIPVSILVELQRLMNFYWWGGK-----MRWLSWERLCVAKENGGLGFRHLQSFNL 318
MS +L+P S++ ++++++N +WWGG+ ++W++WE + KE GG+GFR+ ++FN+
Sbjct: 184 IMSIYLLPSSVIDDIEKMVNAFWWGGRSNNRGIKWMAWEHMACPKEFGGMGFRNFKAFNI 243
Query: 319 ALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGA---GVGRNPSFV---W-RG------ 365
A++ K W LL T SL P +FLGA G G+ S + W RG
Sbjct: 244 AMVAKQGWSLLSTPESLVARVFKSRYFPRSSFLGAKLVGNGQQVSVMNDPWVRGVQGSCI 303
Query: 366 ---------ICAAKDAICSGFR-WRIGDGQSVNVWTELWLLRDNQFQVPL--PILPGVEH 413
I + D I R W + +S L D+ Q L P+ V +
Sbjct: 304 QSPQSQGVHILSVSDLIADEDRVWDVDKIES--------LFPDDMVQAILDTPLFAEVHN 355
Query: 414 IRVSDLILTHGA-----------RAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWH 462
R++ ++ +G+ W++ I LF + + I PL A V +D + W
Sbjct: 356 DRITWMVECNGSCYILIGSMLKKSVWDVDKIESLFPDDMVQAILDTPLFAEVHNDRITWM 415
Query: 463 WTDSGIYSVKSGYRIVASQYVDT-----EDAWRSRFWKTLCHFKFR 503
+G Y++ +GY+I + + T E+ W+ R WK H K R
Sbjct: 416 VECNGRYTINTGYKIAMMELLHTDRFHVEEEWK-RIWKVNSHHKAR 460
>IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse
transcriptase); Histone H2B; Histone-fold;
Polynucleotidyl transferase, Ribonuclease H fold
chr01_pseudomolecule_IMGAG_V3 17931605-17934389 E
EGN_Mt090430 20090702
Length = 802
Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 16/392 (4%)
Query: 56 LGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLF 115
+GF V IM CV++V + V + G P+RGLRQG PLSPYLF+LCAE LS L
Sbjct: 1 MGFPPNLVKTIMNCVTTVSFSVLIIGKPSNKFYPQRGLRQGDPLSPYLFILCAEVLSGLL 60
Query: 116 CKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVN 175
K +G+ G +++ AP +SHL FADDSLFF + +A + + L Y+ SGQ VN
Sbjct: 61 TKGLADGKFHGIQIAPTAPPISHLFFADDSLFFCRSEPKEANFLMDTLQLYQDMSGQKVN 120
Query: 176 WQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHG----RYLGLPSLIGRERRRVFSFLKDH 231
KS + F+ + E + F V P+N +YLGLP+ GR + + F+++ D
Sbjct: 121 LDKSKMVFNPSLRE----DIKKDFQVQLPINISNKITKYLGLPTQFGRSKVQDFNYIMDK 176
Query: 232 VRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG-- 289
V K + GW ++ LS AG+ VLIKAV QAI F MS FL+P ++R + +WWG
Sbjct: 177 VIKKMKGWKERNLSFAGRSVLIKAVVQAIHVFVMSCFLLPQETCDNIERAVCKFWWGSNG 236
Query: 290 ---KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXP 346
K+ W+ +++ + +GGLGFR+L+ FN+ +L K WRL +L P
Sbjct: 237 DNKKIHWVKKDKVLRSTIDGGLGFRNLRDFNMVMLAKQIWRLHTNQQALISKVFKAKYYP 296
Query: 347 SGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLP 406
+ + L A VG PS+ WR A + G ++G+G S+++W + WL F+V L
Sbjct: 297 TTDVLQATVGYAPSYAWRSFHQAIWILNKGCCMKVGNGASIDIWKDQWLHNQIGFKV-LT 355
Query: 407 ILPGVEHI-RVSDLILTHGARAWNLPLIHGLF 437
PGV+++ RV DLI+ + R WN LI +F
Sbjct: 356 HNPGVDNVERVQDLIIDNPQR-WNKDLIEHIF 386
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 194/331 (58%), Gaps = 28/331 (8%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
R + DN + E+IH MK R ALK+DI KAYDR++W YL+ V+ +G++ RW+
Sbjct: 108 RSILDNAMIAIEVIHHMKISKRLRDKNVALKLDISKAYDRIDWLYLKEVVIKIGYANRWI 167
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
IM+CV SV Y V VN + VGPI P GLRQG PLSPYLF+LCAEGLS L ++ER G
Sbjct: 168 RWIMMCVESVDYSVIVNNESVGPIFPGEGLRQGDPLSPYLFILCAEGLSALIHQAERRGD 227
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFF 183
+ G + +P +SHLLFA+D FF + + +KNIL TYE A +
Sbjct: 228 IHGISICTNSPIISHLLFANDCFLFFMAEEREVGVMKNILETYEKA-----------LLV 276
Query: 184 SSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKL 243
K + GVF + + L LPSL+ + D + ++ W+ K
Sbjct: 277 KQLAFRNMKFIIVGVFPTLL-----KTLSLPSLVS-----ALLWELDRIWHKINCWSSKC 326
Query: 244 LSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWG------GKMRWLSWE 297
LSKA +EVL+K+V Q+IPS+ MS +L+P ++ +++++N +WWG + WLSW+
Sbjct: 327 LSKAEREVLMKSVLQSIPSYIMSVYLLPNKLVDAIEKIINAFWWGHGGTTRKGLHWLSWK 386
Query: 298 RLCVAKENGGLGFRHLQSFNLALLGKHCWRL 328
RL V K GG+GF+ L SF++A+LG WR+
Sbjct: 387 RLSVHKNYGGMGFKDLTSFHVAMLGVR-WRI 416
>IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
3397609-3394716 E EGN_Mt090430 20090702
Length = 703
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 216/429 (50%), Gaps = 45/429 (10%)
Query: 79 VNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSH 138
+NG P+RG+RQG PLSPYLF+LCA+ LS L K + +L G ++ AP LSH
Sbjct: 288 INGVPTPVFKPKRGIRQGDPLSPYLFILCADVLSGLITKYHDDNKLHGISIANNAPTLSH 347
Query: 139 LLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVTGV 198
L FADDS+ F ++++A + I A Y++ SGQ +N KS + F+SN ++ +T
Sbjct: 348 LTFADDSMVFCRANKSEAQNLMEIFADYQSISGQKINLNKSEMVFNSNLNQTIQTEFQQY 407
Query: 199 FSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQ 258
++ N +YLGLP+ + + ++F+F+ + + LS + + VLI+AV Q
Sbjct: 408 MTIKITNNIDKYLGLPTQV--LKNQIFNFIME-----------RNLSFSSRGVLIRAVIQ 454
Query: 259 AIPSFCMSSFLIPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHL 313
AIPS+ F WGG ++ W S E L +K NGG GFR +
Sbjct: 455 AIPSYLSVDF-----------------GWGGSEEKRRIHWKSKEVLFKSKFNGGQGFRTM 497
Query: 314 QSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAI 373
FN AL K WRL+H +L P + L A GRNPSFVW I A+ I
Sbjct: 498 HHFNEALFAKQAWRLIHQPQTLISKCLKAKYYPHTDLLRARRGRNPSFVWSSIHHAEWVI 557
Query: 374 CSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVE--HIRVSDLILTHGARAWNLP 431
G W+IG+G VNVW + W+ + N F++ PG IR +L R W+
Sbjct: 558 QKGGCWKIGNGSQVNVWEDNWIPQHNGFKI---YTPGANSSSIRQVKELLVEDPRGWHQS 614
Query: 432 LIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVD-----TE 486
++ F +E I +PL V +D +W ++ G Y+VKSGY + + + +
Sbjct: 615 ILENHFLSFESERIQQLPLVQEVLEDSYMWMYSQDGNYTVKSGYNFIKEWHYNSLPGPSN 674
Query: 487 DAWRSRFWK 495
+ R WK
Sbjct: 675 NNNNQRIWK 683
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
15868030-15871357 E EGN_Mt090430 20090702
Length = 845
Score = 211 bits (538), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 146/247 (59%), Gaps = 12/247 (4%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
R + DN + E++H MK R ALK+DI KAYDR++W YL+ VM +GF +WV
Sbjct: 231 RSILDNAMIAIEVVHHMKVGKRVRDKNVALKLDISKAYDRIDWLYLKEVMLKMGFDSKWV 290
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
IM+CV +V Y V VN + G PLSPYLF+LC EGLS L K+ER G
Sbjct: 291 QQIMMCVETVDYSVIVNNE------------LGDPLSPYLFILCDEGLSALIRKAERSGD 338
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFF 183
L G + AP +SHLLFADD FF+ +A +KNIL TYE ASGQ ++ K +FF
Sbjct: 339 LHGVSICTNAPTISHLLFADDCFLFFKVDDNEAQVMKNILHTYELASGQTISLPKYEVFF 398
Query: 184 SSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKL 243
S+ K +T + V A + G+YLGLPS++GR + F F+KD + ++ W+ K
Sbjct: 399 STVVPLPLKETITNILGVRAVMGTGKYLGLPSMVGRSKEATFGFIKDRIWHKINSWSSKC 458
Query: 244 LSKAGKE 250
LSK G+E
Sbjct: 459 LSKVGRE 465
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 1/150 (0%)
Query: 318 LALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGF 377
L+ +G+ WR +++L P+ +F+G+ +G NPS+VWR I +AK + G
Sbjct: 459 LSKVGREGWRFQTESSNLVCRLFKARYFPNSDFIGSKIGHNPSYVWRSIFSAKIVVKQGA 518
Query: 378 RWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLF 437
RWRIG G ++ WL PI + +++ D I + W PLIH LF
Sbjct: 519 RWRIGSGVNIPFLGAPWLKDGLFLSTTNPIFEPLMQVKLCDFI-EQDVKMWKAPLIHSLF 577
Query: 438 NPSIAEIITSIPLAANVQDDILIWHWTDSG 467
+ AE+I + PL V +D +IW SG
Sbjct: 578 DAQTAELILNTPLQPLVLEDKMIWKGEKSG 607
>IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
34193929-34195112 H EGN_Mt090430 20090702
Length = 373
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 144/230 (62%), Gaps = 22/230 (9%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
R + DN V E++H MK++ G++G ALK+DI KAYDR++W YL+ VM +GF RWV
Sbjct: 159 RPILDNAMVAIEVVHYMKSKTKGKKGNVALKLDISKAYDRIDWLYLKEVMIKMGFCHRWV 218
Query: 64 DLIMLCVSSVKYWVGVNGDEVG-PIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREG 122
+ IM+C+ +V Y V VN VG PIIP RGL+QG PLSPYLF+LC EGLS L ++E G
Sbjct: 219 NWIMMCIETVDYSVLVNQKLVGPPIIPGRGLQQGDPLSPYLFILCVEGLSALIRQAEARG 278
Query: 123 RLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIF 182
L G +VS ++T+A +K ILA YE ASGQA++ KS I+
Sbjct: 279 ELHGAKVS---------------------TETEAHTMKTILAIYEVASGQAISLPKSEIY 317
Query: 183 FSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHV 232
+S NT + +T + V A L +YLGLPS+IGR ++ F+F+KD V
Sbjct: 318 YSRNTGADVQNNITSILGVQAVLGTSKYLGLPSMIGRSKKSTFNFIKDRV 367
>IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233685.2 242381-241350 H EGN_Mt090430
20090702
Length = 268
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 160/260 (61%), Gaps = 25/260 (9%)
Query: 53 MQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLS 112
M+ +G V + +C++SV Y V VNG+ V PIIP+RGLRQG PLSPYLF++C EGLS
Sbjct: 1 MRRMGLHDILVKWMSMCMNSVNYQVIVNGERVRPIIPKRGLRQGDPLSPYLFIICVEGLS 60
Query: 113 KLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQ 172
K+E + G ++ R A L+HLLFADD F + + +++++K IL +YEA S Q
Sbjct: 61 AQLKKAEARVDIHGVKLCRGALILTHLLFADDCFIFCKANMQESIKLKEILQSYEAMSEQ 120
Query: 173 AVNWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHV 232
A+N++K I FS NTSE D++ + RY ++R F +L+D V
Sbjct: 121 AINFRKPEI-FSKNTSEADRSQSKMSY---------RY---------KKRENFGYLRDGV 161
Query: 233 RKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGKMR 292
+ + W K LSKAG+EVLIK V QAIP++CMS+FL+P ++ E+Q ++N +WWG R
Sbjct: 162 WRKIQQWFGKHLSKAGREVLIKFVTQAIPTYCMSTFLLPTTLGEEIQIMINSFWWGLNRR 221
Query: 293 ------WLSWERLCVAKENG 306
WLSW++L KE G
Sbjct: 222 QGKGIDWLSWDKLTTRKEYG 241
>IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
4206337-4207793 E EGN_Mt090430 20090702
Length = 357
Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 168/308 (54%), Gaps = 6/308 (1%)
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFF 183
+ G ++R AP +SHL FADD++ F ++++A +K I Y+ GQ +N KS + F
Sbjct: 30 IMGISIARNAPAISHLFFADDNMIFCRANKSEAKHLKEIFDEYKRVLGQKINLNKSEMVF 89
Query: 184 SSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKL 243
S N + K + + +YLGLP+ +GR + F+F+ + VR + GW ++
Sbjct: 90 SPNIIQSVKKEFQDFMPIQITDSITKYLGLPTQVGRSKTHTFNFIMERVRAKLKGWKERN 149
Query: 244 LSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG-----KMRWLSWER 298
LS +G+ VLI+AV QA+P++ MS FLIP I ++++ + +WWGG ++ W + +
Sbjct: 150 LSFSGRGVLIRAVIQALPTYVMSMFLIPEGICDKIEQAICRFWWGGNEDRRRIHWKNKDF 209
Query: 299 LCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRN 358
L K +GG GFR ++SFN ALL K WRL+ S P+ + L A +G
Sbjct: 210 LFKPKFSGGQGFRTMRSFNEALLAKQVWRLIKYPTSFLATCLKAKHFPNTDVLKAKLGNQ 269
Query: 359 PSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSD 418
PSFVW I K I G RW IGDG+ ++VW + WL N F+ ++ IR+
Sbjct: 270 PSFVWSSIYHTKWIIKKGGRWLIGDGKKIDVWDDNWLPHQNGFKTVSKPTNNID-IRIVK 328
Query: 419 LILTHGAR 426
++ G +
Sbjct: 329 DLMVEGQK 336
>IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233572.2 97249-98280 H EGN_Mt090430
20090702
Length = 258
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 155/260 (59%), Gaps = 35/260 (13%)
Query: 53 MQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLS 112
M+ +G V + +C++SV Y V VNG+ V PIIP+RGLRQG PLSPYLF++C EGLS
Sbjct: 1 MRRMGLHDILVKWMSMCMNSVNYQVIVNGERVRPIIPKRGLRQGDPLSPYLFIICVEGLS 60
Query: 113 KLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQ 172
K+E + G ++ R A L+HLLFADD F + + +++++K IL +YEA S Q
Sbjct: 61 AQLKKAEARVDIHGVKLCRGALILTHLLFADDCFIFCKANMQESIKLKEILQSYEAMSEQ 120
Query: 173 AVNWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHV 232
A+N++K I FS NTSE D++ + F +L+D V
Sbjct: 121 AINFRKPEI-FSKNTSEADRS----------------------------QENFGYLRDGV 151
Query: 233 RKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGKMR 292
+ + W K LSKAG+EVLIK V QAIP++CMS+FL+P ++ E+Q ++N +WWG R
Sbjct: 152 WRKIQQWFGKHLSKAGREVLIKFVTQAIPTYCMSTFLLPTTLGEEIQIMINSFWWGLNRR 211
Query: 293 ------WLSWERLCVAKENG 306
WLSW++L KE G
Sbjct: 212 QGKGIDWLSWDKLTTRKEYG 231
>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
EGN_Mt090430 20090702
Length = 659
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 168/347 (48%), Gaps = 16/347 (4%)
Query: 67 MLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTG 126
M C++S + NG+++ P+RGLRQG PLSPYLFVLC E LS +
Sbjct: 1 MSCITSSSLSLKWNGEKLDSFKPKRGLRQGDPLSPYLFVLCMEKLSLMIQNQVTNNTWRP 60
Query: 127 CRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSN 186
++SR P SHLLFADD L F E +Q ++N+L + ASG +N QK SSN
Sbjct: 61 IKISRHGPSFSHLLFADDCLLFTEAKSSQVKVVRNVLQKFCFASGLKINIQKLKFMSSSN 120
Query: 187 TSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSK 246
S + + + G+YLG P L GR + F+F+ D + ++GW LLS+
Sbjct: 121 VSRHKQHKFESLLQFNHTSHLGKYLGFPMLSGRIKNSDFNFILDKINGRLAGWKMNLLSR 180
Query: 247 AGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGKM-RWLSWERLCVAKEN 305
G+ L K+V A+P + M + +P I + + + WG W++W+ L + K
Sbjct: 181 PGRITLAKSVVTAMPIYTMQNLWLPSGICENIDATVRSFIWGKNYCHWVNWKNLTMPKSC 240
Query: 306 GGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRG 365
GGLG R ++ N++LLGKH W +LH L + + + S +WR
Sbjct: 241 GGLGIRTARNSNISLLGKHIWDILHQPEKLWVQMLRHKYLSNTHIMHTPFKLGDSCIWRA 300
Query: 366 ICAAKDAICSGFRWRIGDG---------------QSVNVWTELWLLR 397
I A + + GF R+G + VN W+ +W L+
Sbjct: 301 IVKAVEILGPGFVCRVGRASYGYRWFDHNLTQQVELVNCWSWIWRLQ 347
>IMGA|Medtr8g024620.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 4663551-4665766 E
EGN_Mt090430 20090702
Length = 587
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 159/310 (51%), Gaps = 35/310 (11%)
Query: 198 VFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVA 257
VF +A N G L + G RV S K W+ + LSKAG+EV+IK+V
Sbjct: 7 VFQKVAITNPGSSLAFHDIAGTIISRVLS-------KWTWIWSSQCLSKAGREVMIKSVL 59
Query: 258 QAIPSFCMSSFLIPVSILVELQRLMNFYWWG--GKMR----WLSWERLCVAKENGGLGFR 311
Q IPS+ MS FL+P +++ E+++++N +WWG G R WLSW++L V K GG+GF+
Sbjct: 60 QVIPSYIMSVFLLPTTLVDEIEKMVNGFWWGHGGSRRKGIHWLSWDKLTVHKNYGGMGFK 119
Query: 312 HLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKD 371
L +FNL +LGK W+ TN L PS ++LGA +G PSFVWR I +AK
Sbjct: 120 DLTAFNLVMLGKQGWKFQTQTNCLVSKLFKARYFPSSDYLGAKLGHKPSFVWRSIFSAKR 179
Query: 372 AICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLP 431
I G + G+GQ+ V ++H ++ LI H R WN
Sbjct: 180 VIREGGKCVSGEGQNSEV---------------------IQHAKIHSLI-DHNLRCWNQD 217
Query: 432 LIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDTEDAWRS 491
+IH F+ S A+ I PL V++D LIW +G YSV+S YRI + D R
Sbjct: 218 VIHCYFDNSTAQQILKTPLFRQVEEDQLIWKAEKNGHYSVRSAYRICMEEIGDNSYLHRP 277
Query: 492 RFWKTLCHFK 501
FW + K
Sbjct: 278 GFWNGIWKLK 287
>IMGA|AC225611_8.1 contains similarity to reverse trancriptase,
related, putative AC225611.10 67770-68780 H EGN_Mt090430
20090702
Length = 336
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 150/280 (53%), Gaps = 6/280 (2%)
Query: 213 LPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPV 272
+P+ GR + + F+FL D + K + GW +K LS G+ VLI+ VAQAIP++ MS FL+P
Sbjct: 1 MPTHFGRSKEQDFNFLMDRIWKKLKGWKEKSLSFEGRGVLIRVVAQAIPTYIMSCFLLPK 60
Query: 273 SILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWR 327
SI ++R + +WWG K+ W+ + L K +GG+GFR+L+ FNLA+L K WR
Sbjct: 61 SICDRIERAICSFWWGSNETKRKIHWIKKDHLFKFKHDGGMGFRNLRDFNLAMLAKQVWR 120
Query: 328 LLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSV 387
L SL P+ + L G NPS+ WR I + I G RIG+G +
Sbjct: 121 LHTQPQSLIARCYKARYYPNSDVLQVSQGYNPSYAWRSISQSIWIINKGSCKRIGNGYNT 180
Query: 388 NVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITS 447
+W + W+ + F+V P L V DLI +G WN ++ F P ++I
Sbjct: 181 KIWEDNWIPYHSNFKVLSPKLDTTNINLVKDLIQDNGTE-WNTDILQANFIPYEQDLIKQ 239
Query: 448 IPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDTED 487
IPL + D L+W G+Y+VKSGY+ + S + +D
Sbjct: 240 IPLINHNNSDELMWMKDTDGLYTVKSGYQAIQSWKQNDQD 279
>IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
25061037-25062481 E EGN_Mt090430 20090702
Length = 407
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 6/305 (1%)
Query: 181 IFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWN 240
+ FS N S+ K + V +YLG+P+ GR + + F F+ + + K GW
Sbjct: 1 MVFSPNISQEFKEEIQKHLHVKISDGIQKYLGMPTQFGRSKEQDFHFIMERIWKKHKGWK 60
Query: 241 QKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWG-----GKMRWLS 295
+K LS G+ VLIKAVAQAIP++ MS F++P + ++++ + +WWG KM W+S
Sbjct: 61 KKCLSFEGRGVLIKAVAQAIPTYYMSCFMLPKGLCTKIEKAICSFWWGTTDKNKKMHWVS 120
Query: 296 WERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGV 355
++L +K +GGLGF+ L+ FNLA+L K R NSL P + L A V
Sbjct: 121 KKKLFRSKHSGGLGFKTLRDFNLAMLAKKVRRFYTNPNSLIAKCFKANYYPHTDILQAKV 180
Query: 356 GRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIR 415
G PS+ W+ I A I G WRIGDG S+N+W + W+ +V P R
Sbjct: 181 GNYPSYAWKSIQNAIWVISKGSCWRIGDGGSINIWEDNWVPTYKGLKVMTTKGPNHFVNR 240
Query: 416 VSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGY 475
V DLI + WN ++ F + I+ IPL D L+W +GIYSVKSGY
Sbjct: 241 VKDLI-NNQESLWNKVILEDQFISINIDQISHIPLVNTTNPDSLMWMHNPTGIYSVKSGY 299
Query: 476 RIVAS 480
+ +
Sbjct: 300 NTLRT 304
>IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
7642559-7645649 E EGN_Mt090430 20090702
Length = 541
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 146/278 (52%), Gaps = 6/278 (2%)
Query: 213 LPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPV 272
+P+ GR + + F F+ D + K + GW +K LS G+ LI+A+AQAIP++ MS FL+P
Sbjct: 1 MPTQFGRSKEQDFHFIMDRIWKKLKGWKEKSLSFEGRGTLIRAIAQAIPTYVMSCFLLPK 60
Query: 273 SILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWR 327
+ ++++ + +WWGG K+ W E L + GG+GF+ L+ FN+A+L K WR
Sbjct: 61 GLCEKIEKAVCAFWWGGSDSKRKIHWTKKENLFKPRHKGGMGFKILRDFNMAMLAKQVWR 120
Query: 328 LLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSV 387
SL P + L +G N S+ WR I + I G W+IG+GQ V
Sbjct: 121 FQTNQKSLISRVFKAKYFPYQDILQTNLGYNLSYAWRSIFHSIWVIQKGSCWKIGNGQKV 180
Query: 388 NVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITS 447
+W + W+ ++ P + + + V DLI T +WN +++ F + I
Sbjct: 181 RIWEDNWIPTHQNLRIFTPNMGNPDVVLVKDLINT-DEPSWNNSILNTHFLSIDKDQIEC 239
Query: 448 IPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDT 485
IPL DD +IWH+ G Y+V+SGY+ + + + T
Sbjct: 240 IPLINLANDDEIIWHFNQDGNYTVRSGYQAIQNWKITT 277
>IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
12119249-12120974 H EGN_Mt090430 20090702
Length = 477
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 153/310 (49%), Gaps = 6/310 (1%)
Query: 89 PERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFF 148
P LRQG PLSPYLFV+C E LS + ++ + R +SR P LSHL FADD L F
Sbjct: 17 PIGRLRQGDPLSPYLFVMCMENLSHMILEAVDDSRWKPVTLSRNGPPLSHLFFADDVLLF 76
Query: 149 FETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHG 208
+ + +Q ++++ + SG VN KS FFS+ + + V + +
Sbjct: 77 SKATVSQVRVMEDVFTKFAGTSGLKVNTSKSRAFFSNVVTHSKINTMVSVTGIHNTSSLD 136
Query: 209 RYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSF 268
+YLG P GR +R + FL D V+ ++ W KLL+KAG+ L K+V AIP++ M
Sbjct: 137 KYLGFPIFHGRMKRVDYDFLIDKVQSCLASWKNKLLNKAGRLTLAKSVLNAIPTYYMQIS 196
Query: 269 LIPVSILVELQRLMNFYWWGGK----MRWLSWERLCVAKENGGLGFRHLQSFNLALLGKH 324
P SI +L ++ + W G + +SW+++ K GGLG R ++ N ALLGK
Sbjct: 197 WTPQSICNQLDKMTRKFIWKGTDGKGVHLVSWDKITRPKSLGGLGVRVARNANTALLGKL 256
Query: 325 CWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDG 384
W + N + N L +N S W + A+ + G +R+G+G
Sbjct: 257 VWDIHTNANKSWVQILSNKYLGNYNVLDVP-KKNGSTTWNSMLKARSVLRDGLVFRVGNG 315
Query: 385 QSVNVWTELW 394
+ + W W
Sbjct: 316 -TTSFWYSSW 324
>IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
23554745-23554236 H EGN_Mt090430 20090702
Length = 169
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 108/153 (70%)
Query: 66 IMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLT 125
+ +C+ SV Y V VNG+ VGPI P+RGLRQG PLSPYLF+LCAEGLS L ++E G +
Sbjct: 1 MTMCIESVNYQVLVNGESVGPINPKRGLRQGDPLSPYLFILCAEGLSALLRRAETRGDIH 60
Query: 126 GCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSS 185
G +V R AP L+HLLFA D F +S + +IK +L YE+ +GQA++++KS IFF
Sbjct: 61 GVKVCRGAPLLTHLLFAYDCFLFCRSSIMKCTKIKEVLHVYESVTGQAIHFEKSEIFFGK 120
Query: 186 NTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIG 218
NTS+ D+ A+ + V A + +G+YLG+PS++G
Sbjct: 121 NTSQADRKAIKNLLQVSANMGNGKYLGMPSMVG 153
>IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
12585358-12584747 H EGN_Mt090430 20090702
Length = 203
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 115/199 (57%)
Query: 14 FELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSV 73
E++H MK R ALK+ I K Y ++ YL+ VMQ L F+ RWV IM+CV +
Sbjct: 4 IEVVHHMKISKRSRDKNVALKLYIGKGYVCIDRLYLKEVMQKLEFANRWVRWIMMCVETD 63
Query: 74 KYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAA 133
Y V VN + VGPI RGLRQG PLSPYLF+LCAEG L K E + + A
Sbjct: 64 DYSVIVNNESVGPIFLGRGLRQGDPLSPYLFILCAEGHLALIHKGEWREDMHDISICTNA 123
Query: 134 PQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNTSELDKT 193
P +SHLLFADD FF ++ +A +K+IL YEA S QA+N KS ++++ N S K
Sbjct: 124 PVISHLLFADDCFLFFWLNEIEAHMMKHILEIYEAVSSQAINLPKSEVYYNHNVSAPLKD 183
Query: 194 AVTGVFSVIAPLNHGRYLG 212
+T V A + G+YL
Sbjct: 184 FITTTLDVRAVMGTGKYLN 202
>IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 9482517-9480709 E
EGN_Mt090430 20090702
Length = 602
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 142/256 (55%), Gaps = 8/256 (3%)
Query: 230 DHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG 289
D +RK + GW +K LS G+ VLI+AVAQAIP + MS +L+P+S+ +++R + +WWGG
Sbjct: 2 DRIRKKLKGWKEKNLSFEGRGVLIRAVAQAIPVYVMSCYLLPISLCEDIERAVCNFWWGG 61
Query: 290 -----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXX 344
K+ W+S + L K+ GG+GF+ L+ FNLA+L K WRL +SL
Sbjct: 62 TEHTRKIHWVSKQILFKQKKEGGMGFKILRDFNLAMLAKQIWRLHIYPDSLLAKCLKAKY 121
Query: 345 XPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVP 404
P+ + L A G NPS+ WR + + + G WRIG+G V++ ++ WL +N ++
Sbjct: 122 YPNSDVLKATAGYNPSYAWRSLQKSIWILNKGCCWRIGNGDQVHIQSDNWLPYNNGYK-- 179
Query: 405 LPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWT 464
PI + +LT WN L+ F P + I +P+ + D+L+W +
Sbjct: 180 -PIYSNPNSPPMVKDLLTEFPFDWNYNLLQQNFLPMDSSQIAQLPIIHPNKPDVLMWMFD 238
Query: 465 DSGIYSVKSGYRIVAS 480
SG Y+VKSGY + +
Sbjct: 239 LSGSYTVKSGYNAIQN 254
>IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
6753317-6752601 H EGN_Mt090430 20090702
Length = 238
Score = 159 bits (402), Expect = 5e-39, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 8/230 (3%)
Query: 216 LIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSIL 275
+IGR ++ +F F+KD V + ++ W + LSKAGKEV+IK+ Q+IP++ MS FLIP S+
Sbjct: 1 MIGRSKKDMFKFIKDQVWRKINSWGGRSLSKAGKEVMIKSALQSIPTYFMSIFLIPSSLG 60
Query: 276 VELQRLMNFYWWGG------KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLL 329
E++++MN +WWG +RWLSW +L V K +GG+GF++L FN+ALLGK WRL+
Sbjct: 61 DEIEKMMNSFWWGNGGNRNKGIRWLSWYKLYVHKRSGGMGFKNLYMFNMALLGKQVWRLM 120
Query: 330 HTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNV 389
L + A G N S+VW+ I A + G RW+IG + V
Sbjct: 121 CQPELLIARLFKARYYQRNDIFEAKKGNNSSYVWKSIHEAIPMVKQGTRWKIGKKDKIRV 180
Query: 390 WTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNP 439
+ + WL+ Q P + + V +L L G ++W+L ++ P
Sbjct: 181 FQDRWLMNGGLAQ-PAAQYNQLLQLNVKEL-LQPGQKSWDLDVLQHYLTP 228
>IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
11971058-11973594 E EGN_Mt090430 20090702
Length = 628
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 138/252 (54%), Gaps = 3/252 (1%)
Query: 39 KAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCP 98
+ YD ++W ++ + +G +++IM V++V+ V NG+ P++GLRQG P
Sbjct: 370 QTYDNLSWNFIHMTLLEVGLPMEMINVIMHSVTTVRTNVRWNGNRADFFTPKKGLRQGDP 429
Query: 99 LSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALE 158
+SPYLFV+C + LS L ++ +G + R P +SHL+FADD L F + + +Q
Sbjct: 430 ISPYLFVICMDKLSHLISEAIDKGDWLDLKTGRTGPMISHLMFADDLLLFGQATDSQMRG 489
Query: 159 IKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIG 218
+ +L + GQ+++ QK+ IFFSSN + + + + G+YLG+P
Sbjct: 490 VMEVLNKFCHLLGQSISIQKTTIFFSSNVYRVTRRLLVDISGFRETTELGKYLGVPLTGK 549
Query: 219 RERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVEL 278
RR+ F +L + VR ++ W S AG+ L K+V +AIP M + ++P + + E+
Sbjct: 550 APRRKDFQYLVNEVRNKLTAWKSNQFSFAGRVTLAKSVIEAIP---MMNSVVPKAYVQEI 606
Query: 279 QRLMNFYWWGGK 290
Q++ + WG K
Sbjct: 607 QKVQRAFIWGDK 618
>IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
26299553-26300277 H EGN_Mt090430 20090702
Length = 207
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 114/194 (58%), Gaps = 21/194 (10%)
Query: 8 DNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIM 67
DN + E+IHS+K + G +G ALK+DI KAYDRV+ YL+ V+ +GF M
Sbjct: 32 DNTLIATEIIHSVKRKTNGWRGELALKIDISKAYDRVDGGYLRGVLMRMGF--------M 83
Query: 68 LCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGC 127
L +N D VGPI+P RGLRQ PLSPYLF+L AEGLS L K+ G + G
Sbjct: 84 L----------MNFDRVGPIVPGRGLRQADPLSPYLFILVAEGLSTLIHKAVNRGGIHGV 133
Query: 128 RVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNT 187
+V AP +SHLLFADD F + +A + IL TYE ASGQ +N KS +FFS N
Sbjct: 134 QVCCGAPLVSHLLFADDCFLFCRANVVEAQRLLTILKTYEVASGQEINLSKSEVFFSRNM 193
Query: 188 S---ELDKTAVTGV 198
S + D + + GV
Sbjct: 194 SGAAQEDLSRIIGV 207
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 124/197 (62%), Gaps = 9/197 (4%)
Query: 230 DHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG 289
D + K ++ W + LSKAGKEV+IK+V Q+IPS+ MS +L+P S++ ++++++N +WWGG
Sbjct: 251 DRIWKRINAWRGRALSKAGKEVMIKSVLQSIPSYIMSIYLMPSSVIDDIEKMINAFWWGG 310
Query: 290 K-----MRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXX 344
+ ++W++WER+ KE GG+GF + ++FN+A++ K W L SL
Sbjct: 311 RSNNRGIKWMAWERMACPKEFGGMGFMNFKAFNIAMVAKQGWSFLSKLESLVARVFEARY 370
Query: 345 XPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWL--LRDNQFQ 402
P +FLGA +G N SF WR I ++ + G RW +G+GQ V+V + W+ ++D+ Q
Sbjct: 371 FPRSSFLGAKLGNNLSFAWRSIWNSRQILLHGCRWTVGNGQQVSVMNDPWVRGVQDDMVQ 430
Query: 403 VPL--PILPGVEHIRVS 417
V L P+ V++ R++
Sbjct: 431 VILDTPLFAEVQNDRIT 447
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 26/145 (17%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
R + DN + E+IHSMK + G +G ALK+DI KAYD+V W +L+ V+ +GF+++W+
Sbjct: 127 RSILDNALITTEIIHSMKRKTKGWRGELALKIDINKAYDKVGWGFLRGVLMRMGFNEKWI 186
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
+M+C G PLSPYLF+L EGLS L K+ G
Sbjct: 187 QWMMMC--------------------------GDPLSPYLFILVDEGLSTLIHKAVNRGD 220
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFF 148
+ G +V R AP +SHLLFADD F
Sbjct: 221 IHGIQVCRGAPVVSHLLFADDYFLF 245
>IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
35324945-35323011 H EGN_Mt090430 20090702
Length = 613
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 135/278 (48%), Gaps = 37/278 (13%)
Query: 206 NHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCM 265
N +YLG+P+ +G + + F FL D V + GW +K LS G+ +LI+AVAQAI ++ M
Sbjct: 18 NIQKYLGMPTHLGMSKEQDFQFLMDRVWNKLKGWKEKSLSFEGRGILIRAVAQAISTYIM 77
Query: 266 SSFLIPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLAL 320
S FL+P + ++++ + +WWG K+ W E L +K GG+GF L+ FNLA+
Sbjct: 78 SCFLLPKGLCDKIEKAVCAFWWGSTDNKRKIHWTKKENLFKSKLEGGMGFNILRDFNLAM 137
Query: 321 LGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWR 380
L K WR NSL P N L A +G NPS+ WR I A I G WR
Sbjct: 138 LAKQDWRFHTEPNSLISRCYKAKYYPHCNVLQATIGNNPSYAWRSIFNALWIIKKGSCWR 197
Query: 381 IGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPS 440
IG+GQ DLI+ + + WN L++ F
Sbjct: 198 IGNGQE-------------------------------DLIMVNSS-TWNSELLNNQFLGI 225
Query: 441 IAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIV 478
E I IP+ D L+W + +G Y+VKSGY +
Sbjct: 226 DTEAIEQIPIIDIFHRDTLMWMFEKTGSYTVKSGYTAI 263
>IMGA|Medtr8g105650.1 reverse transcriptase, putative;
100033-105622, related chr08_pseudomolecule_IMGAG_V3
23385469-23384651 H EGN_Mt090430 20090702
Length = 244
Score = 151 bits (382), Expect = 1e-36, Method: Composition-based stats.
Identities = 85/271 (31%), Positives = 137/271 (50%), Gaps = 34/271 (12%)
Query: 213 LPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPV 272
+P+ GR + F F+ D + K + GW +K LS G+ LI+AVAQAIP++ MS FL+P
Sbjct: 1 MPTHFGRSKEHDFHFIMDRIWKKLKGWKEKSLSFEGRGTLIRAVAQAIPTYVMSCFLLPK 60
Query: 273 SILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWR 327
+ ++++++ +WWGG K+ W E L + GG+GF+ L+ FN+A+L K
Sbjct: 61 GLCEKIEKVVCAFWWGGTDSKKKIHWTKRENLFKPRHKGGMGFKILRDFNMAMLAKQ--- 117
Query: 328 LLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSV 387
A +G +PS+ WR I + I G W+IG+GQ V
Sbjct: 118 -------------------------ANLGYSPSYAWRSIFHSIWVIQKGSCWKIGNGQKV 152
Query: 388 NVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITS 447
+W + W+ + F++ P L + + V DL +WN +++ F + I
Sbjct: 153 RIWEDNWIPTHHNFRIFTPNLGNPDVVLVKDLT-NMDEPSWNNSILNTHFLSIDKDQIEC 211
Query: 448 IPLAANVQDDILIWHWTDSGIYSVKSGYRIV 478
IPL DD ++WH+ G Y+V SGY+ +
Sbjct: 212 IPLINLANDDEIMWHFNQDGKYTVHSGYQAI 242
>IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
40247310-40247920 H EGN_Mt090430 20090702
Length = 187
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 91/132 (68%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
R + DN + E+IHSMK + G +G ALK+DI KAYDRV+W +L+ V+ +GFS++W+
Sbjct: 44 RSILDNALIATEIIHSMKRKTKGWRGELALKIDISKAYDRVDWGFLRGVLMRMGFSEKWI 103
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
+M+CVSSV Y V N D VGPI+P RGLRQG PLSPYLF+L AEGLS L K G
Sbjct: 104 QWMMMCVSSVTYSVLTNFDRVGPIVPGRGLRQGDPLSPYLFILVAEGLSTLIHKIVNSGD 163
Query: 124 LTGCRVSRAAPQ 135
+ G +V R AP
Sbjct: 164 IHGVQVCRGAPD 175
>IMGA|Medtr1g117580.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 25273871-25275952 H
EGN_Mt090430 20090702
Length = 663
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 3/186 (1%)
Query: 301 VAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPS 360
+ NG + F+ L +FNLA+LGK WR+L ++L NFL A +G PS
Sbjct: 472 LGSTNGSMSFKSLGTFNLAMLGKQGWRILTNPDTLIAKIYKARYFSRCNFLEATIGHKPS 531
Query: 361 FVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLP-ILPGVEHIRVSDL 419
FVWR IC +K + +G RW+IG+G S+ VW W ++DN PL + + ++RVSD
Sbjct: 532 FVWRSICNSKFILKAGSRWKIGNGTSIPVWNNYW-MKDNVTLYPLEDVASTLANLRVSDC 590
Query: 420 ILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVA 479
IL + ++WNLP +H +FN + E I + PL +V +D LIW ++G YSV+S Y +
Sbjct: 591 ILPN-HKSWNLPFLHSVFNHQVVEHIINTPLFPSVHEDRLIWKKENNGEYSVRSAYHLCM 649
Query: 480 SQYVDT 485
++ +DT
Sbjct: 650 NELLDT 655
>IMGA|Medtr5g029030.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
12035165-12036141 H EGN_Mt090430 20090702
Length = 250
Score = 140 bits (353), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 1/207 (0%)
Query: 303 KENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFV 362
KE GG+GFRH FNLA+LGK W+LL +++ P+ FLGA +G N S++
Sbjct: 3 KEYGGMGFRHFFGFNLAMLGKQGWKLLTNQDTIVARIYKAKYYPNTYFLGARLGHNQSYI 62
Query: 363 WRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILT 422
WR I A + + G RWRIG+G+++ VWT+ WL D V + G E+++V+DL+ +
Sbjct: 63 WRSIFALQVLVRGGQRWRIGNGKNIAVWTDPWLREDKNSVVSSTRVQGTENLKVADLMDS 122
Query: 423 HGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQY 482
+G WN LI LFN I + L +D IW + G Y+VKS YR
Sbjct: 123 NGV-TWNWGLIAALFNEQDKAAIAKLALTNREGEDKRIWKFNSQGFYTVKSAYRYAMETL 181
Query: 483 VDTEDAWRSRFWKTLCHFKFRRKXGIF 509
+D E+ R W + + ++ +F
Sbjct: 182 IDNEEYRVPREWLKMLKMQIPQRIKVF 208
>IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13557404-13554904 H EGN_Mt090430 20090702
Length = 447
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 110/216 (50%), Gaps = 42/216 (19%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
RL+ DN + E+I+ MK R LK+DI KAYDR++W YL+ +M +GF W+
Sbjct: 76 RLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLYLKQIMVKMGFVTHWI 135
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
IM+CV V Y+V VN + VGPI P RG RQG PLS YLF+LCA K ERE
Sbjct: 136 RWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLFILCA--------KDEREAN 187
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFF 183
+ +K+IL TYEAASGQA++ KS +++
Sbjct: 188 V----------------------------------MKHILETYEAASGQAISLPKSKVYY 213
Query: 184 SSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGR 219
S + + +T + + +YLGL +IG+
Sbjct: 214 SRSVPGHVQDFITSILGDCTLIGTIKYLGLTFMIGQ 249
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 346 PSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPL 405
P G+FL + +G N FV R I +AK + G RWRIG G ++ + + WL + +
Sbjct: 254 PHGDFLSSRLGANLGFVLRSIFSAKMVVKQGARWRIGSGATIPLLSTPWLKDECSLTMDN 313
Query: 406 PILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTD 465
P+ + H++V D I + WN +I LF+ + ++I + L V +D LIW
Sbjct: 314 PMYVPLSHVKVQD-ITEPSTKVWNTTVISNLFDHNTTQLILNTHLQPLVHEDKLIWKVEK 372
Query: 466 SG 467
+G
Sbjct: 373 NG 374
>IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13373662-13371162 H EGN_Mt090430 20090702
Length = 447
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 110/216 (50%), Gaps = 42/216 (19%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
RL+ DN + E+I+ MK R LK+DI KAYDR++W YL+ +M +GF W+
Sbjct: 76 RLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLYLKQIMVKMGFVTHWI 135
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
IM+CV V Y+V VN + VGPI P RG RQG PLS YLF+LCA K ERE
Sbjct: 136 RWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLFILCA--------KDEREAN 187
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFF 183
+ +K+IL TYEAASGQA++ KS +++
Sbjct: 188 V----------------------------------MKHILETYEAASGQAISLPKSKVYY 213
Query: 184 SSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGR 219
S + + +T + + +YLGL +IG+
Sbjct: 214 SRSVPGHVQDFITSILGDCTLIGTIKYLGLTFMIGQ 249
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 346 PSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPL 405
P G+FL + +G N FV R I +AK + G RWRIG G ++ + + WL + +
Sbjct: 254 PHGDFLSSRLGANLGFVLRSIFSAKMVVKQGARWRIGSGATIPLLSTPWLKDECSLTMDN 313
Query: 406 PILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTD 465
P+ + H++V D I + WN +I LF+ + ++I + L V +D LIW
Sbjct: 314 PMYVPLSHVKVQD-ITEPSTKVWNTTVISNLFDHNTTQLILNTHLQPLVHEDKLIWKVEK 372
Query: 466 SG 467
+G
Sbjct: 373 NG 374
>IMGA|Medtr2g111140.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
26300425-26300964 H EGN_Mt090430 20090702
Length = 179
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
Query: 252 LIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGK-----MRWLSWERLCVAKENG 306
+IK V Q+IPS+ MS +L+P S++ ++++++N +WWGG+ ++W++WER+ KE G
Sbjct: 1 MIKYVLQSIPSYIMSIYLLPNSVIDDIEKMINAFWWGGRSNNRGIKWMAWERVACPKEFG 60
Query: 307 GLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGI 366
G+ FR+ ++FN+A++ K W L +SL P +FLGA +G NPSF WR I
Sbjct: 61 GMRFRNFKAFNIAMVAKQGWSFLSKPDSLVARIFKSRYFPRSSFLGAKLGNNPSFAWRSI 120
Query: 367 CAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLI 420
+ + G RW IGDGQ V+V + W+ + + P V + VSDLI
Sbjct: 121 WNSCQLLLYGCRWTIGDGQQVSVMNDPWVRGVHGSWIQSPQGQDVHSLPVSDLI 174
>IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
3889810-3888042 H EGN_Mt090430 20090702
Length = 489
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 124/262 (47%), Gaps = 42/262 (16%)
Query: 252 LIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGK------MRWLSWERLCVAKEN 305
+IK+V QAI S+ MS F +P +++ ++R+MN +WWG + WLSWE+L + K +
Sbjct: 1 MIKSVLQAIMSYVMSLFQLPTTLITTIERMMNSFWWGHDRSTHQSINWLSWEKLSMHKSH 60
Query: 306 GGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRG 365
GG+GF+ L +FNLA+LGK W+ L TNSL P F+ RG
Sbjct: 61 GGMGFKDLSAFNLAMLGKQGWKFLSDTNSLV---------------------TPRFIVRG 99
Query: 366 ICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPG--VEHIRVSDLILTH 423
RW I G S+ + L N + I G V +V LI H
Sbjct: 100 RA----------RWSISSGVSLPILDAPLL--SNGESIDGSITEGFYVRDFKVQSLISEH 147
Query: 424 GARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYV 483
G R N+PL+ +F+ I + I + PL V D LIW +G Y+V+S YR+ + +
Sbjct: 148 GKRR-NVPLVRQVFSNDIVDAILNTPLYDQVHQDRLIWKAERNGCYTVRSAYRLCVEKLM 206
Query: 484 DTEDAWRSRFWKTLCHFKFRRK 505
D R W + K K
Sbjct: 207 DVSYLHRPGSWNNIWRLKVPPK 228
>IMGA|Medtr8g037100.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 7957038-7958530 H
EGN_Mt090430 20090702
Length = 410
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 20/233 (8%)
Query: 318 LALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGF 377
+A+LGK WR+L ++L P NFL A +G NPSFVWR I +K + +G
Sbjct: 1 MAMLGKQGWRILTKPDTLIARIYKARYFPRCNFLEAELGHNPSFVWRSIYKSKFILRAGS 60
Query: 378 RWRIGDGQSVNVWTELWLLRDNQFQVPL-PILPGVEHIRVSDLILTHGARAWNLPLIHGL 436
RW+IGDG S++VW W ++DN PL + + ++RVSD +L + ++W++P +H +
Sbjct: 61 RWKIGDGMSISVWNNYW-MKDNVTIFPLDDVATTLANLRVSDCLLPN-QKSWDVPFLHSI 118
Query: 437 FNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDT-----EDAW-- 489
F+ I E I + PL ++V++D LIW ++ YSV+S YR+ ++ +DT E AW
Sbjct: 119 FSEQIVEHIVATPLYSSVREDQLIWKKENNEEYSVRSAYRLCLNELLDTSHFKVEGAWDL 178
Query: 490 ----------RSRFWKTLCHFKFRRKXGIFSGDVVATSCQLKQLWQEGDWSLI 532
++ W+ +F RK G T C L L +EG L+
Sbjct: 179 VWKLKVPPRVKNLIWRICRNFLPTRKRLRDKGVNCTTVCALCNLEEEGSMHLL 231
>IMGA|Medtr3g044190.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
12265782-12266442 H EGN_Mt090430 20090702
Length = 195
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 9/172 (5%)
Query: 265 MSSFLIPVSILVELQRLMNFYWWGGK------MRWLSWERLCVAKENGGLGFRHLQSFNL 318
MS F +P S+ E++++MN +WWG + +SW++L + K++GG+ F+ L +FN+
Sbjct: 1 MSLFTLPSSLCDEIEKMMNSFWWGHSGSHRKGIHRMSWDKLSMHKKDGGMSFKSLGTFNM 60
Query: 319 ALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFR 378
A+LGK WR+L ++L P NFL A +G NPSFVWR IC +K + +G R
Sbjct: 61 AMLGKQGWRILTKPDTLIARIYKARYFPRCNFLEAELGHNPSFVWRSICKSKFILRAGSR 120
Query: 379 WRIGDGQSVNVWTELWLLRDNQFQVPL-PILPGVEHIRVSDLILTHGARAWN 429
W+IGDG S++VW W ++DN PL + + ++RVSD +L + ++W+
Sbjct: 121 WKIGDGTSISVWNNYW-MKDNVTIFPLDDVATTLANLRVSDCLLPN-QKSWD 170
>IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
13863857-13863375 E EGN_Mt090430 20090702
Length = 116
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 75/110 (68%)
Query: 39 KAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCP 98
KAYDR+NW YL+ VM LGF +W IM+CV SVKY V VN + GPI+P GLR+G P
Sbjct: 3 KAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSGLRKGDP 62
Query: 99 LSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFF 148
LSPYLF+LCA+GL+ L K+E G L G RV AP +HLLF DD F
Sbjct: 63 LSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLF 112
>IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
1329629-1330366 H EGN_Mt090430 20090702
Length = 245
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
RL+SDN + +E+ H + + + ++G +K + KAYD+V W +L+A M +GF ++V
Sbjct: 97 RLISDNTLMSYEIFHYL-SNTSSKKGYMGMKTVMAKAYDKVEWTFLEATMLKMGFPHQFV 155
Query: 64 DLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGR 123
IM CV++V + + ++G P+RGLRQG PLSPYLF++C + S+L K+
Sbjct: 156 STIMRCVTTVTFSILIDGSNSKEFQPQRGLRQGDPLSPYLFIICVDVFSELINKANNNKL 215
Query: 124 LTGCRVSRAAPQLSHLLFADDSLFF 148
+ G ++ AP+++HL FAD +L F
Sbjct: 216 IHGVKIVNGAPEITHLFFADANLTF 240
>IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750,
chr04_pseudomolecule_IMGAG_V3 40910518-40909919 H
EGN_Mt090430 20090702
Length = 199
Score = 124 bits (310), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 5/196 (2%)
Query: 230 DHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG 289
D + K + GW +K LS G+ VLI+AV Q IP++ MS FL+P + +++R++ +WWG
Sbjct: 2 DRIWKKLKGWKEKSLSFEGRGVLIRAVTQVIPTYYMSCFLLPKGLCEKIERVVCSFWWGS 61
Query: 290 -----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXX 344
K+ W + E L K +GG+ F+ L+ FN+A+L K WR N+L
Sbjct: 62 TNTKKKIHWKNKEILFKFKHDGGMVFKSLRDFNIAMLAKQVWRFHTNLNTLIAKCFKSKY 121
Query: 345 XPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVP 404
P + L A +G NP++ WR I A I G WR+G G ++ +W + W+ + +V
Sbjct: 122 YPHTDILEADLGNNPNYAWRSIQNAIWPILKGSCWRVGKGDNIRIWDDNWIPTYHSLRVL 181
Query: 405 LPILPGVEHIRVSDLI 420
P +V DLI
Sbjct: 182 NPKRNNPHINKVKDLI 197
>IMGA|Medtr2g114260.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 26977303-26977923 H
EGN_Mt090430 20090702
Length = 178
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 33/186 (17%)
Query: 209 RYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSF 268
+YLG+ + GR + + F+FLKD + K + GW +K +S G+ LI+AVAQAIP++ MS F
Sbjct: 21 KYLGITTHFGRSKEQDFNFLKDRIWKKLKGWKEKSVSFEGRAFLIRAVAQAIPTYIMSCF 80
Query: 269 LIPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGK 323
L+P + +++++ F+WWG KM W E L +K GG+GF+ L+ FNLA L K
Sbjct: 81 LLPKGLCSRIEKVVCFFWWGSTEHKKKMHWTKREHLFKSKLEGGMGFKILRGFNLAKLTK 140
Query: 324 HCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGD 383
+G N +F WR I AK I G WRIG+
Sbjct: 141 Q----------------------------VNIGSNSNFAWRSIYNAKWVIQKGSCWRIGN 172
Query: 384 GQSVNV 389
GQSVN+
Sbjct: 173 GQSVNI 178
>IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putative
chr04_pseudomolecule_IMGAG_V3 4275704-4277642 H
EGN_Mt090430 20090702
Length = 171
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 89/152 (58%)
Query: 115 FCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAV 174
K+ +G + G + R P +SHLLFADD F + + +IL YE ASGQ V
Sbjct: 1 MTKAVVKGDIPGIKNFRRGPAVSHLLFADDCFIFCRAKVNEVQHLISILREYEEASGQQV 60
Query: 175 NWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRK 234
N KS +FF +N S+ K + + V L G YLGLPS++GR ++ F ++KD + +
Sbjct: 61 NLAKSEVFFGNNMSQAAKQDLANILGVKHALGTGTYLGLPSMVGRSKKATFGYIKDKIWR 120
Query: 235 LVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMS 266
++ W + LSK+GKE +IK+V Q IPS+ MS
Sbjct: 121 KINSWRGRSLSKSGKETMIKSVLQLIPSYIMS 152
>IMGA|Medtr4g084360.1 Putative ribonuclease H protein At1g65750,
chr04_pseudomolecule_IMGAG_V3 17721962-17723166 E
EGN_Mt090430 20090702
Length = 188
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 23/160 (14%)
Query: 181 IFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWN 240
I FS N ++++++ + + + +YLG+P+ +G+ +R
Sbjct: 42 IIFSKNVADIEQSNIIQILGMKKVEGFSKYLGVPTHMGKSKR------------------ 83
Query: 241 QKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGG-----KMRWLS 295
QK LS AG+ LIKAV+QAIP++ MS FL+P + +L R++ +WWG + W+
Sbjct: 84 QKHLSFAGRSTLIKAVSQAIPTYIMSGFLLPKNFCQQLDRVICDFWWGSNTDSKRTHWIK 143
Query: 296 WERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSL 335
WE+LC AK+NGGLGFR+L++FN+ALL K WR+ SL
Sbjct: 144 WEKLCKAKKNGGLGFRNLRAFNIALLAKQIWRIQTQNQSL 183
>IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
31873812-31875697 H EGN_Mt090430 20090702
Length = 485
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 132/301 (43%), Gaps = 67/301 (22%)
Query: 185 SNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLL 244
S+ ++ D + GV V L G+YLGL S+IGR + F+++KD + + ++ W + L
Sbjct: 2 SHVAQEDLARILGVRLV---LGTGKYLGLTSMIGRSKTTTFAYIKDRIWQKINSWRGRAL 58
Query: 245 SKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGKMRWLSWERLCVAKE 304
SKAGKEV+IK V Q+IPS+ MS +++P +++ +++ ++N +
Sbjct: 59 SKAGKEVMIKFVLQSIPSYIMSIYVLPRTVINDIEMMLNSF------------------- 99
Query: 305 NGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWR 364
+ G W L SL P +FL A G NPS+ WR
Sbjct: 100 -----------WWGGGGGNGGWNFLTNPPSLISQIFKARYFPITSFLDAKFGFNPSYAWR 148
Query: 365 GICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHG 424
I ++ + G RW IGDG + V + WL +Q
Sbjct: 149 IIWMSRQILSRGCRWSIGDGSHIRVMGDPWLCSGSQL----------------------- 185
Query: 425 ARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVD 484
L A ++ L +VQ+D ++W +G+YSV+SGY IV + V
Sbjct: 186 -----------LKTKEWAHVVIQTSLFPSVQEDKVVWQEESNGLYSVRSGYHIVVREVVP 234
Query: 485 T 485
+
Sbjct: 235 S 235
>IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse
transcriptase); Endonuclease/exonuclease/phosphatase
AC233655.2 202219-200303 H EGN_Mt090430 20090702
Length = 567
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 30 AFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIP 89
A AL + +A D+ YL ++++ +GF+ W++ + +CV++VKY + VN + VGP+IP
Sbjct: 454 AKALANRLQRALDKFE--YLFSILEKMGFNSVWINWMHMCVTNVKYHILVNDEIVGPVIP 511
Query: 90 ERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDS 145
RGLRQG PLSPYLF+LCA G++ L ++ER L G +V AP +SHLLFADDS
Sbjct: 512 GRGLRQGDPLSPYLFILCAGGMTSLIKQAERNNILHGIKVCCIAPAISHLLFADDS 567
>IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 19822787-19820648 H
EGN_Mt090430 20090702
Length = 612
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 1/168 (0%)
Query: 318 LALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGF 377
L+ G+ WR + +L P+ +F+G+ +G NPS+VWR I +AK + G
Sbjct: 105 LSKAGREGWRFQTESTNLVCRLFKARYFPNSDFIGSKIGHNPSYVWRSIFSAKIVVKQGA 164
Query: 378 RWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLF 437
RWRIG G ++ WL + PI + +++ D I + W PLIH LF
Sbjct: 165 RWRIGSGVNIPFLGAPWLKDGLSLSITNPIFEPLMQVKLCDFI-EQDVKMWKAPLIHSLF 223
Query: 438 NPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDT 485
+ AE+I + PL V +D +IW +G YS+KS YRI ++ D
Sbjct: 224 DAQTAELILNTPLQPLVLEDKMIWKGEKNGTYSLKSAYRICVTEIADN 271
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%)
Query: 149 FETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHG 208
+ +A +KNIL TYE ASGQA++ KS +FFS+ K +T + V A + G
Sbjct: 10 YLADDNEAQVMKNILHTYELASGQAISLPKSEVFFSTVVPLPLKETITNILGVRAVMGTG 69
Query: 209 RYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKE 250
+YLGLPS++GR + F F+KD + ++ W+ K LSKAG+E
Sbjct: 70 KYLGLPSMVGRSKEATFGFIKDRIWHKINSWSSKCLSKAGRE 111
>IMGA|Medtr5g088270.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
34195188-34196556 H EGN_Mt090430 20090702
Length = 307
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 265 MSSFLIPVSILVELQRLMNFYWWGGK------MRWLSWERLCVAKENGGLGFRHLQSFNL 318
MS FL+P +++ ++++++N +WWG + WLS +L V K +GG+GF+ L +FNL
Sbjct: 1 MSVFLLPTTLVDQIEKMINGFWWGNGGSNRRGIHWLSCNKLRVHKNHGGMGFKDLTAFNL 60
Query: 319 ALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFR 378
A+LGK W+ + L P ++LGA +G N SFVWR I +A+ SG R
Sbjct: 61 AMLGKQGWKFQFQSECLVSKLFKARYFPQSDYLGAKLGHNLSFVWRSIYSARRVARSGVR 120
Query: 379 WRIGDGQSVNVWTELWL 395
W+IG+ ++ ++ WL
Sbjct: 121 WKIGNSVNIPIFDAPWL 137
>IMGA|Medtr3g125040.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
31944726-31943241 H EGN_Mt090430 20090702
Length = 351
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 107/246 (43%), Gaps = 48/246 (19%)
Query: 265 MSSFLIPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFNLA 319
MS FL+P + ++R++ +WWGG K+ W + L +K++GG GF++L+ FNL
Sbjct: 1 MSCFLLPQGLCDRIERVVCSFWWGGSDSNRKIHWTKNDSLFQSKDSGGFGFKNLRDFNLD 60
Query: 320 LLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRW 379
+L K WR P N G W
Sbjct: 61 MLAKQAWRFY--------------TQPHSNLQKGGC-----------------------W 83
Query: 380 RIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNP 439
RIG+G S+ +W + W+ +N F+ P + V DL L G+ W+ LI F
Sbjct: 84 RIGNGHSIKIWEDNWIPSNNDFKTISPNIGNPNIQLVKDLFLQDGS-GWDTDLIKNNFLH 142
Query: 440 SIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQ-----YVDTEDAWRSRFW 494
+ IT IP+ ++D +W +G+YSVK+GY+I+ S+ + RFW
Sbjct: 143 IDRDNITQIPIINTSKNDEYMWMHEQNGVYSVKNGYQILQSRKSIRSLSPSTSNNNIRFW 202
Query: 495 KTLCHF 500
K F
Sbjct: 203 KNFGQF 208
>IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
6317912-6319402 H EGN_Mt090430 20090702
Length = 456
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 170/424 (40%), Gaps = 56/424 (13%)
Query: 77 VGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQL 136
+ +NG + G RG+RQG PLSP LF E LS+ K +G++ + SR
Sbjct: 3 ISINGSQRGYFKCARGVRQGDPLSPLLFCSAEEVLSRGILKLVDDGKVELIKASRDTQIP 62
Query: 137 SHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVT 196
SH +ADD + + + +K++ Y + SGQ +N KS IF ++ + T V
Sbjct: 63 SHCFYADDLMVYCKGKLYSLEALKDLFTRYASCSGQVINLGKSFIFSGGVSNNMLSTMVN 122
Query: 197 GVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAV 256
+ I L+ YLG P G+ F + D ++ ++ W LLS AG+ L+K+V
Sbjct: 123 LLGFNIGSLSFT-YLGAPIFKGKPNTIHFQPIADKIKLKLASWKAYLLSIAGRVQLVKSV 181
Query: 257 AQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGKMRWLSWERLCVAKENGGLGFRHLQSF 316
Q G M+ R+C + LG + L
Sbjct: 182 VQ------------------------------GMMK-----RVCADLDERRLGTKSLICL 206
Query: 317 NLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNP--SFVWRGICAAKDAIC 374
+ A K CW +LH+ + S G + S + GI + I
Sbjct: 207 SEATNLKLCWDVLHSNETWAVIIR------SRTLRGTYCIHHHIYSSIRSGIKQEFNTIK 260
Query: 375 SGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIR--VSDLILTHGARAWNLP- 431
W + +G ++ W + W R Q L ++++ +S I + W+ P
Sbjct: 261 ENTSWLVENGDNIQFWLDSW-CRKPLIQALNLSLNQIQNLPQCISSYIQNN---QWDTPN 316
Query: 432 -LIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDTEDAWR 490
L+H + P + ++T + + ++D LIW + +G S+K Y Y + W
Sbjct: 317 ELLHAM--PDLRRLVTQVTIPVQQKEDELIWCHSTNGTLSMKEVYESKKHHY--PKRKWA 372
Query: 491 SRFW 494
W
Sbjct: 373 KLIW 376
>IMGA|Medtr7g084960.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
18459835-18459356 H EGN_Mt090430 20090702
Length = 144
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 22/163 (13%)
Query: 301 VAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPS 360
+ +GG+ F++L +FNLA+LGK WRL+ +SL P NF + +G PS
Sbjct: 1 MHNSDGGMSFKNLPTFNLAMLGKQGWRLMINPDSLVARLYKAKYYPRCNFFESTLGHKPS 60
Query: 361 FVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPG---VEHIRVS 417
FVWR IC DG+ ++VW W+ D +P G + +RVS
Sbjct: 61 FVWRSIC---------------DGEDISVWYNKWIANDVTL---IPHANGHFPLADLRVS 102
Query: 418 DLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILI 460
D +L H + WNLP + +F+ + E I + PL +V +D LI
Sbjct: 103 DCML-HDRKEWNLPFLQSIFDHHVVENIVNTPLYPSVTEDRLI 144
>IMGA|Medtr3g009350.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
1330505-1330813 H EGN_Mt090430 20090702
Length = 102
Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 65/93 (69%), Gaps = 5/93 (5%)
Query: 209 RYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSF 268
+YLG+P+ +GR +R+VF FL+D + K + GW ++ LS AG+ VLIK VA+AIP++ MS F
Sbjct: 9 KYLGMPTGMGRNKRQVFEFLQDRIWKKLKGWKERNLSFAGRSVLIKVVAEAIPTYIMSGF 68
Query: 269 LIPVSILVELQRLMNFYWWG-----GKMRWLSW 296
L+P S +L++L+ WWG GK W++W
Sbjct: 69 LLPKSFCNQLEKLICNIWWGSNTDQGKTHWINW 101
>IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23354620-23355450 H EGN_Mt090430 20090702
Length = 276
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 18/264 (6%)
Query: 221 RRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQR 280
+ + +F ++++ + ++ W LL+K G+ L+K+V +IP + M +P S + R
Sbjct: 5 KGEILNFFEENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDR 64
Query: 281 L-MNFYWWGG---KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLX 336
L +NF W G ++ + WE++ K+ GGL R + N +LLG+ WRL +SL
Sbjct: 65 LAINFLWKGSSNFRIYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLW 124
Query: 337 XXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQS----VNVWTE 392
+ L ++ S W I A+ + GF +R+GD S VN W+
Sbjct: 125 VKVLTHKYFHADKLLTV-TRKSGSVTWNAIMKARFTLRDGFDFRLGDDNSSFWFVN-WSG 182
Query: 393 LWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAA 452
+ L + V + L ++RV D+ + AWN I+ SI + + +P+
Sbjct: 183 IGKLTEKVLYVDIHDL----NLRVKDVFVNG---AWNFNHIYTTLPASITDSLKILPICL 235
Query: 453 NVQ-DDILIWHWTDSGIYSVKSGY 475
N + D W GIYS + GY
Sbjct: 236 NSRVTDGYTWKGNLHGIYSAEDGY 259
>IMGA|AC233668_8.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233668.2 19990-20214 H
EGN_Mt090430 20090702
Length = 74
Score = 92.0 bits (227), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 50/73 (68%)
Query: 84 VGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFAD 143
VG IIP RGLRQG PLSPYLF+LCAEGLS L K ER G L G + AP + HLLFAD
Sbjct: 2 VGLIIPGRGLRQGDPLSPYLFILCAEGLSTLIDKDERCGDLRGISICTHAPTICHLLFAD 61
Query: 144 DSLFFFETSQTQA 156
D FF ++ +A
Sbjct: 62 DCFLFFRANEKEA 74
>IMGA|Medtr4g013050.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 2458849-2459642 H
EGN_Mt090430 20090702
Length = 155
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 72/220 (32%)
Query: 4 RLLSDNVXVDFELIHSMK--TRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQR 61
R + DN + FE++H MK TRM+ LK+DI KAY++++W YL+ VM +G SQ
Sbjct: 6 RSILDNAMIPFEVVHHMKIDTRMSNNIAT--LKLDINKAYNQIDWVYLKKVMLKMGLSQ- 62
Query: 62 WVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSERE 121
+ + VGPII RGL Q PL PYL++LCAEG S L ++ER
Sbjct: 63 ------------------SCNLVGPIILGRGLCQSDPLFPYLYILCAEGFSALNRQAER- 103
Query: 122 GRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGI 181
RA S FF S I
Sbjct: 104 ---------RAINMAS---------FF------------------------------SKI 115
Query: 182 FFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRER 221
++S+ E + +T + V A L G++LGLP +IG+ +
Sbjct: 116 YYSTTAEEQIQATITHILGVQAALGIGKFLGLPFMIGKNK 155
>IMGA|Medtr4g012970.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 2420499-2421292 H
EGN_Mt090430 20090702
Length = 155
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 72/220 (32%)
Query: 4 RLLSDNVXVDFELIHSMK--TRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQR 61
R + DN + FE++H MK TRM+ LK+DI KAY++++W YL+ VM +G SQ
Sbjct: 6 RSILDNAMIPFEVVHHMKIDTRMSNNIAT--LKLDINKAYNQIDWVYLKKVMLKMGLSQ- 62
Query: 62 WVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSERE 121
+ + VGPII RGL Q PL PYL++LCAEG S L ++ER
Sbjct: 63 ------------------SCNLVGPIILGRGLCQSDPLFPYLYILCAEGFSALNRQAER- 103
Query: 122 GRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGI 181
RA S FF S I
Sbjct: 104 ---------RAINMAS---------FF------------------------------SKI 115
Query: 182 FFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRER 221
++S+ E + +T + V A L G++LGLP +IG+ +
Sbjct: 116 YYSTTAEEQIQATITHILGVQAALGIGKFLGLPFMIGKNK 155
>IMGA|Medtr4g140270.1 RNA-directed DNA polymerase ; Ribonuclease H,
putative chr04_pseudomolecule_IMGAG_V3 34349081-34347530
H EGN_Mt090430 20090702
Length = 346
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 17/241 (7%)
Query: 221 RRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQR 280
+ + +F ++++ + ++ W LL+K G+ L+K+V +IP + M +P S + R
Sbjct: 5 KGEILNFFEENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDR 64
Query: 281 L-MNFYWWGG---KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLX 336
L +NF W G ++ + WE++ K+ GGL R + N +LLG+ WRL +SL
Sbjct: 65 LAINFLWKGSSNFRIYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLW 124
Query: 337 XXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQS----VNVWTE 392
+ L ++ S W I A+ + GF +R+GD S VN W+
Sbjct: 125 VKVLTHKYFHADKLLTV-TRKSGSVTWNAIMKARFTLRDGFDFRLGDDNSSFWFVN-WSG 182
Query: 393 LWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAA 452
+ L + V + L ++RV D+ + AWN I+ SI + + +P+
Sbjct: 183 IGKLTEKVLYVDIHDL----NLRVKDVFVNG---AWNFNHIYTTLPASITDSLKILPICL 235
Query: 453 N 453
N
Sbjct: 236 N 236
>IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
13465118-13466957 H EGN_Mt090430 20090702
Length = 509
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 117/265 (44%), Gaps = 41/265 (15%)
Query: 59 SQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKS 118
S+ + D I+ + S + + +NG VG RG+RQG PLSP LF + E LS+ +
Sbjct: 272 SEVFCDWIITILHSARLSININGKSVGFFKCTRGVRQGDPLSPILFCIAEEVLSRGIEEL 331
Query: 119 EREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQK 178
GR+T R +R+ SH L+ADD L F + + + ++L Y SGQ +N QK
Sbjct: 332 VVRGRMTQIRATRSLYIPSHCLYADDILIFCKGTLANVKNLMHLLEGYGNYSGQLINAQK 391
Query: 179 SGIFFSS-NTSELDKT-AVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLV 236
S + S S+++ ++TG PLN YLG+ G+ + + D ++ +
Sbjct: 392 SKFYTGSIPLSKINAICSLTGFSQGCIPLN---YLGILLFKGKPKSIYLKPIVDKIQLRL 448
Query: 237 SGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWWGGKMRWLSW 296
+ W LL+ G+ V+L++L +SW
Sbjct: 449 NAWKGTLLTFMGR--------------------------VQLRKLYT----------VSW 472
Query: 297 ERLCVAKENGGLGFRHLQSFNLALL 321
+LC K GGL + N A L
Sbjct: 473 SQLCKPKNAGGLAVKDPIKMNQASL 497
>IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
23474829-23476616 H EGN_Mt090430 20090702
Length = 477
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 17/241 (7%)
Query: 221 RRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQR 280
+ + +F ++++ + ++ W LL+K G+ L+K+V +IP + M +P S + R
Sbjct: 5 KGEILNFFEENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDR 64
Query: 281 L-MNFYWWGG---KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLX 336
L +NF W G ++ + WE++ K+ GGL R + N +LLG+ WRL +SL
Sbjct: 65 LAINFLWKGSSNFRIYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLW 124
Query: 337 XXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQS----VNVWTE 392
+ L ++ S W I A+ + GF +R+GD S VN W+
Sbjct: 125 VKVLTHKYFHADKLLTV-TRKSGSVTWNAIMKARFTLRDGFDFRLGDDNSSFWFVN-WSG 182
Query: 393 LWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAA 452
+ L + V + L ++RV D+ + AWN I+ SI + + +P+
Sbjct: 183 IGKLTEKVLYVDIHDL----NLRVKDVFVN---GAWNFNHIYTTLPASITDSLKILPICL 235
Query: 453 N 453
N
Sbjct: 236 N 236
>IMGA|Medtr2g100610.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23480965-23481815 H EGN_Mt090430 20090702
Length = 251
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 17/239 (7%)
Query: 223 RVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRL- 281
+ +F ++++ + ++ W LL+K G+ L+K+V +IP + M +P S + RL
Sbjct: 7 EILNFFEENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLA 66
Query: 282 MNFYWWGG---KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXX 338
+NF W G ++ + WE++ K+ GGL R + N +LLG+ WRL +SL
Sbjct: 67 INFLWKGSSNFRIYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVK 126
Query: 339 XXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQS----VNVWTELW 394
+ L ++ S W I A+ + GF +R+GD S VN W+ +
Sbjct: 127 VLTHKYFHADKLLTV-TRKSGSVTWNAIMKARFTLRDGFDFRLGDDNSSFWFVN-WSGIG 184
Query: 395 LLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAAN 453
L + V + L ++RV D+ + AWN I+ SI + + +P+ N
Sbjct: 185 KLTEKVLYVDIHDL----NLRVKDVFVNG---AWNFNHIYTTLPASITDSLKILPICLN 236
>IMGA|Medtr2g100360.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23360766-23362551 H EGN_Mt090430 20090702
Length = 379
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 17/241 (7%)
Query: 221 RRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQR 280
+ + +F ++++ + ++ W LL+K G+ L+K+V +IP + M +P S + R
Sbjct: 5 KGEILNFFEENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDR 64
Query: 281 L-MNFYWWGG---KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLX 336
L +NF W G ++ + WE++ K+ GGL R + N +LLG+ WRL +SL
Sbjct: 65 LAINFLWKGSSNFRIYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLW 124
Query: 337 XXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQS----VNVWTE 392
+ L ++ S W I A+ + GF +R+GD S VN W+
Sbjct: 125 VKVLTHKYFHADKLLTV-TRKSGSVTWNAIMKARFTLRDGFDFRLGDDNSSFWFVN-WSG 182
Query: 393 LWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAA 452
+ L + V + L ++RV D+ + AWN I+ SI + + +P+
Sbjct: 183 IGKLTEKVLYVDIHDL----NLRVKDVFVN---GAWNFNHIYTTLPASITDSLKILPICL 235
Query: 453 N 453
N
Sbjct: 236 N 236
>IMGA|Medtr7g068050.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 13863114-13862631 H
EGN_Mt090430 20090702
Length = 114
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 291 MRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNF 350
+RWLSW++L V K NGG+GF++L FN+ALLG WRL+ P
Sbjct: 14 IRWLSWDKLFVHKRNGGMGFKNLYLFNMALLGNQVWRLM--------------SQPENAI 59
Query: 351 LGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLL 396
A G N S+VW+ I A + G RW+IG+G + V+ + WL+
Sbjct: 60 FEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLV 105
>IMGA|Medtr4g084370.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
17724162-17724986 H EGN_Mt090430 20090702
Length = 274
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 360 SFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDL 419
S+ WR A+ I G W +G+G +N+W + WL N F+V + +VSDL
Sbjct: 22 SYSWRSFLQARWVIQKGSYWTVGNGNLINIWEDRWLPDQNGFKVFSKKPNNCDIQKVSDL 81
Query: 420 ILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVA 479
I + +WN PLIH LF P + I IPL +DD L+W T++G YSVK GY +
Sbjct: 82 I-DYTTLSWNTPLIHKLFLPFETDQIHQIPLINTNEDDDLVWAHTNNGSYSVKYGYHFIK 140
Query: 480 SQ 481
++
Sbjct: 141 NR 142
>IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13555953-13554878 H EGN_Mt090430 20090702
Length = 318
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%)
Query: 27 RQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGP 86
++ KVD KA+D +NW YL+AVM+ + + W IM CVS+ V VNG
Sbjct: 213 KKDLLLFKVDFEKAFDSINWSYLEAVMKKMNYPTLWRKWIMECVSTASTSVLVNGSPTDE 272
Query: 87 IIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSR 131
ERGLRQG P SP+LF++ AEGL+ + G +G ++ +
Sbjct: 273 FKLERGLRQGDPFSPFLFLIAAEGLNVMMKALIEAGLFSGYKLGQ 317
>IMGA|Medtr1g122150.1 contains similarity to reverse trancriptase,
related, putative chr01_pseudomolecule_IMGAG_V3
26788772-26788104 H EGN_Mt090430 20090702
Length = 222
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Query: 320 LLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRW 379
+L K WR +SL P + L A +G NPS+ WR I + I G W
Sbjct: 1 MLAKQVWRFHTKPHSLISRCFKAKYFPQSDILQAPLGCNPSYAWRSIHNSIWVILKGSCW 60
Query: 380 RIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNP 439
+IG+G+S VW + W+ N F++ + V DLI + +W+ +++ LF P
Sbjct: 61 KIGNGESAKVWGDNWVPLHNGFKILTQKMEPFSIRHVKDLI-NMDSFSWDTEILNNLFLP 119
Query: 440 SIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIV 478
+ I IP+ D +W +G+Y+VKSGY+ +
Sbjct: 120 IDKDHIEQIPIINTTNIDEYMWMHEPTGVYTVKSGYKAI 158
>IMGA|Medtr3g024330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
5982582-5983034 H EGN_Mt090430 20090702
Length = 150
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
Query: 252 LIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWW--GGK----MRWLSWERLCVAKEN 305
+IK + Q+IP++ +S FLIP S+ E++++MN++WW GG +RWLSW++L V K +
Sbjct: 1 MIKYILQSIPTYFISIFLIPSSLGDEIEKIMNYFWWENGGNRNKGIRWLSWDKLYVHKRS 60
Query: 306 GGLGFRHLQSFNLALLGKHCWRLL 329
G+GF++L FN+AL K WRL+
Sbjct: 61 RGMGFKNLYMFNMALHDKQVWRLM 84
>IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse
transcriptase) CU179634.6 121572-121327 H EGN_Mt090430
20090702
Length = 81
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 55/79 (69%)
Query: 34 KVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGL 93
K+DI KAYD +NW +L +M+ +GF+ RW+ I C+S+VK+ V +N + G +RGL
Sbjct: 3 KLDIQKAYDHLNWNFLLKLMEKMGFAFRWIKWIEHCISTVKFSVLINRETNGFFSSQRGL 62
Query: 94 RQGCPLSPYLFVLCAEGLS 112
RQG PLSP+LF++ EG S
Sbjct: 63 RQGDPLSPFLFIMGMEGSS 81
>IMGA|AC146793_2.1 RNA-directed DNA polymerase, related AC146793.7
10132-10811 E EGN_Mt090430 20090702
Length = 170
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 29/193 (15%)
Query: 294 LSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGA 353
+S E+L V GG+ F+ L SF +A+LGK WR SL + +F+ +
Sbjct: 1 MSLEKLSVHNCFGGMRFKDLTSFIMAMLGKQGWRFQTDPTSLVSRLFKARYFSNSSFIQS 60
Query: 354 GVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEH 413
+G NPS+V+R I +AK + W +G G ++ WL
Sbjct: 61 SIGHNPSYVYRSIFSAKIMVKHDALWPVGSGANIPFLGAPWL------------------ 102
Query: 414 IRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKS 473
+L + +F P A+ I + PL V +D LIW SG Y V+S
Sbjct: 103 -----------KDGLSLSTTNSIFEPLFAQRILNTPLQHLVTEDKLIWKGDKSGKYFVRS 151
Query: 474 GYRIVASQYVDTE 486
YRI + D
Sbjct: 152 AYRICVFEIADNS 164
>IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
3891819-3892634 H EGN_Mt090430 20090702
Length = 213
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 115 FCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAV 174
FC + +L G + P +S+LLFADD++ F +T ++A +KNI++ EAASG+ +
Sbjct: 87 FCTRWLQWKLHGIHICHKTPPISYLLFADDNVHFCKTFVSEAPCLKNIISDIEAASGKTI 146
Query: 175 NWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVF 225
N+ K GI FS N S +++ + V + G YLGLPS++ + +F
Sbjct: 147 NFDKLGISFSKNISRNVVNSISSLLGVNESIGGGEYLGLPSMVRHSNKIIF 197
>IMGA|Medtr5g073420.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
26369293-26369057 H EGN_Mt090430 20090702
Length = 78
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 56/78 (71%), Gaps = 6/78 (7%)
Query: 252 LIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWW--GGK----MRWLSWERLCVAKEN 305
+IK+V QAIPS+ MS FL+ S++ +++++N +WW GG + WLSWE+L + K+
Sbjct: 1 MIKSVLQAIPSYVMSIFLLLSSLIDAIEKMLNAFWWEHGGSNNRGIHWLSWEKLTLHKQY 60
Query: 306 GGLGFRHLQSFNLALLGK 323
GG+ F+ L +FNLA+LGK
Sbjct: 61 GGMSFKDLTAFNLAMLGK 78
>IMGA|Medtr1g009220.1 contains similarity to reverse trancriptase,
related, related chr01_pseudomolecule_IMGAG_V3
1138065-1137052 H EGN_Mt090430 20090702
Length = 208
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 2/154 (1%)
Query: 329 LHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAA-KDAICSGFRWRIGDGQSV 387
+H + L P +FL A VG PS+ WR I A D I WR+ DG +
Sbjct: 1 MHNDDLLISQCLKERYFPRISFLRAFVGYCPSYTWRSIMQACVDVIEKIDIWRVRDGHLI 60
Query: 388 NVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITS 447
++W + WL N ++ P + + VSD I R WN PLI+ F P A+ I
Sbjct: 61 HIWEDNWLSYQNGHKIWSPKPSNCDIMFVSDFI-HDDIRCWNAPLINDTFLPFEAQQILQ 119
Query: 448 IPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQ 481
+P + D +W + S I+SVKS Y + ++
Sbjct: 120 LPFFFSQLQDEFVWDVSRSTIFSVKSAYHFLKTR 153
>IMGA|Medtr4g160470.1 RNA-directed DNA polymerase, related, putative
chr04_pseudomolecule_IMGAG_V3 40668899-40668561 H
EGN_Mt090430 20090702
Length = 112
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 47/79 (59%)
Query: 103 LFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNI 162
LF++CAEGLS L K E G + G +V R AP L+HLLF DD F ++ +A +
Sbjct: 24 LFIICAEGLSVLLKKLEARGEIHGIKVCRGAPLLTHLLFVDDCFLFCRANEKEAQALSEA 83
Query: 163 LATYEAASGQAVNWQKSGI 181
L YE AS Q +N QKS I
Sbjct: 84 LKKYEEASRQPINLQKSKI 102
>IMGA|Medtr6g024980.1 Putative ribonuclease H protein At1g65750,
chr06_pseudomolecule_IMGAG_V3 5466766-5467589 H
EGN_Mt090430 20090702
Length = 259
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 25/269 (9%)
Query: 192 KTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEV 251
K + + ++I + G L P + GR R V++ + D V K ++ W +L+KAG+
Sbjct: 7 KRVIQDISTIIFVADLGHCLCFPLIKGRVSRNVYNNVVDKVLKRLATWKGNILNKAGRAC 66
Query: 252 LIKAVAQAIP-SFCMSSFLIPVSILVELQRLMNFYWWGGKMRWLSWERLCVAKENGGLGF 310
L+K+V AIP + F + L R N ++W + K GGLG
Sbjct: 67 LVKSVTTAIPVRYDGKEFPLGGD---GLSRTWNH---------VNWNMVTTPKRFGGLGI 114
Query: 311 RHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAK 370
R + +LALL K W +LH + L + + PS RGI A
Sbjct: 115 REARLTDLALLSKLVWNMLHNKDKLWVKVLSHKYLYNTSLWMNKKHNKPSITCRGILHAI 174
Query: 371 DAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLIL----THGAR 426
+ G+ +R+G G S ++W W Q P+ V + +SD ++
Sbjct: 175 TSFAPGYNFRVGSGDS-SIWNNDW----TQLG---PLCQLVPFVNISDSVMCLKDVWENG 226
Query: 427 AWNLPLIHGLFNPSIAEIITSIPLAANVQ 455
WNL + + I I +P N+
Sbjct: 227 KWNLQGLATMIPTDIVHYIHQLPAPTNLD 255
>IMGA|Medtr5g021560.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
8248910-8249829 H EGN_Mt090430 20090702
Length = 241
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query: 346 PSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPL 405
P ++LG +G NP+F WR I ++ + G R IG+GQ V+V + W+ + +
Sbjct: 18 PHSSYLGPKLGYNPNFAWRSIWNSRQLLLYGCRCTIGNGQQVSVMNDPWVRGTREKWIQS 77
Query: 406 PILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTD 465
P GV +RVSDLI+ R W++ + LF + + I PL A V +D + W
Sbjct: 78 PQSQGVRSLRVSDLIVDE-ERVWDIDKLESLFPDDMVQAILDTPLFAEVHNDRIAWMKER 136
Query: 466 SGIYSVKSGYRIVASQYVDTE 486
SG V + R+ S++V E
Sbjct: 137 SGRGCVLTCLRL-QSRHVQCE 156
>IMGA|Medtr1g122160.1 contains similarity to reverse trancriptase,
related, putative chr01_pseudomolecule_IMGAG_V3
26789109-26788828 H EGN_Mt090430 20090702
Length = 93
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 213 LPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPV 272
+P+ GR + + F F+ D + K + GW +K LS G+ VLI+AVAQAIP++ MS FL+P
Sbjct: 1 MPTQFGRSKEQDFHFIMDKIWKKLKGWKEKCLSFEGRGVLIRAVAQAIPTYYMSCFLLPK 60
Query: 273 SILVELQRLMNFYWWG--GKMRWLSWER 298
+ ++++ + +WWG G R + W +
Sbjct: 61 GLCTKIEKAVCSFWWGTAGDKRKIHWTK 88
>IMGA|Medtr3g043440.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 11780720-11779218 H
EGN_Mt090430 20090702
Length = 425
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 29/260 (11%)
Query: 248 GKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLM-NFYWWGG----KMRWLSWERLCVA 302
G+ L+K++ Q++ C+S + PV + +++R M NF W G K+ +SW ++C+
Sbjct: 3 GRVQLVKSLIQSMLLHCISVYSFPVKLTKDIERWMRNFVWSGDVNQRKLVTVSWHKVCLP 62
Query: 303 KENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGV--GRNP- 359
+ GGLG R L N K C LLH+ +FL + V + P
Sbjct: 63 LKEGGLGIRSLSKINEGANLKLCRELLHSNYQW------------AHFLRSRVLKKKKPI 110
Query: 360 -----SFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHI 414
S VW GI + + W +GDG ++N WT+ W + I PG+
Sbjct: 111 SYHIFSSVWSGIKHKYTEVLANSSWNLGDGANINFWTDSWCGK--PLVEEFSIDPGLHDN 168
Query: 415 RVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSG 474
S + L W +P P+I I+ + + +DD ++ + +G K
Sbjct: 169 LSSTVNLFIEDAKWKIPQSLLQNFPNIQNIVEKVIIPVIAKDDEMLSKLSSNGELCFKDA 228
Query: 475 YRIVASQYVDTEDAWRSRFW 494
Y S + AW W
Sbjct: 229 YLFHCSHGQNI--AWAKIIW 246
>IMGA|Medtr3g103220.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
25344775-25343668 H EGN_Mt090430 20090702
Length = 206
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 35/139 (25%)
Query: 263 FCMSSFLIPVSILVELQRLMNFYWWGGK------MRWLSWERLCVAKENGGLGFRHLQSF 316
+CMS FL+P +I E++ +M ++WG K + L W+ + K++GGL FR L+ +
Sbjct: 34 YCMSVFLLPTTIREEIEHVMKSFYWGLKKNGGRSINRLKWDNMTPCKDHGGLKFRDLEGY 93
Query: 317 NLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSG 376
NLA+L K +LL SL N ++++
Sbjct: 94 NLAMLVKQKLKLLTKFPSLLTK-----------------APNAKYIFKN----------- 125
Query: 377 FRWRIGDGQSVNVWTELWL 395
RWRIGDG ++NVWT W+
Sbjct: 126 -RWRIGDGNNINVWTYPWI 143
>IMGA|Medtr7g127430.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 29873082-29875620 E
EGN_Mt090430 20090702
Length = 344
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 389 VWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSI 448
+WT+ WL D V + G E ++V+DL+ +GA +WN LI G+FN E ++ +
Sbjct: 118 IWTDPWLREDGNSYVSSEKVQGTESMKVADLMDINGA-SWNWELIAGIFNEQDREAVSKL 176
Query: 449 PLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVD 484
L +DD LIW + + G Y+VKS YR+ +++ +D
Sbjct: 177 VLLNRDRDDKLIWKFNNQGNYTVKSAYRLSSAESMD 212
>IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V3
16870634-16874775 H EGN_Mt090430 20090702
Length = 651
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 8/191 (4%)
Query: 295 SWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAG 354
SW +C K GLG R NL + K W L H ++ GN +
Sbjct: 53 SWASICTPKSYAGLGLRTACDMNLTAMMKVGWSLSHKKDAFWVKIIKAKYR-CGNDIMPR 111
Query: 355 VGRNP--SFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQF--QVPLPILPG 410
+ N S +WRGIC + + WR+G G ++N W+++W+ LPI
Sbjct: 112 IQTNKAGSNLWRGICRNWEKVTPNLIWRVGQGDNINFWSDMWVPGAGPLSCHTNLPITID 171
Query: 411 VEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLA-ANVQDDILIWHWTDSGIY 469
+ + V + + A WNL L+ L P I E I S+P + D L W + G +
Sbjct: 172 DDMLTVKE--FANDAGDWNLSLLVNLLPPWIIEQIRSLPAPHSEASVDSLAWEGSLDGEF 229
Query: 470 SVKSGYRIVAS 480
S Y + S
Sbjct: 230 SHALAYESILS 240
>IMGA|Medtr4g084240.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr04_pseudomolecule_IMGAG_V3
17645335-17644567 H EGN_Mt090430 20090702
Length = 185
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 86/231 (37%), Gaps = 77/231 (33%)
Query: 281 LMNFYWWGGK------MRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNS 334
+ NF+WWG + WLSW++L + K + G+GF L +FNLA+L K W+ S
Sbjct: 1 MKNFFWWGHGGANNRGISWLSWKKLLMHKVHAGVGFIDLPAFNLAMLAKQGWKFQTNPES 60
Query: 335 LXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELW 394
L FL A +G NPS+VW I A + + RWR D
Sbjct: 61 L--------------FLTARLGDNPSYVWDNILQACLIVRNEVRWRSKD----------- 95
Query: 395 LLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANV 454
+ + + N S+ +T
Sbjct: 96 -------------------------------------IAYDVLNTSLVNQVT-------- 110
Query: 455 QDDILIWHWTDSGIYSVKSGYRIVASQYVDTEDAWRSRFWKTLCHFKFRRK 505
+D LIW +GIYSVKS +R+ +DT FW + K K
Sbjct: 111 -NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWRLKVPPK 160
>IMGA|Medtr5g088710.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
34427458-34427919 H EGN_Mt090430 20090702
Length = 153
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 376 GFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHG 435
G RWRIG G ++ + WL + P+ + H++V ++I + WN LI
Sbjct: 6 GARWRIGSGDTIPLLDAPWLKDGRSLTMDNPMYAPLSHVKVPNII-EPSTKVWNTTLISN 64
Query: 436 LFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVD 484
+FN + ++I + PL V +D L W +G YSV S YRI ++ D
Sbjct: 65 MFNHNTTQLILNTPLQPLVHEDKLTWKAEKNGNYSVSSAYRICVTEIAD 113
>IMGA|Medtr2g095450.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
21818522-21818196 H EGN_Mt090430 20090702
Length = 108
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 67 MLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTG 126
M+CV S+ Y V VN + I RGLR+G PLS YLF+LC +G+S L ++ R R+ G
Sbjct: 1 MMCVGSIFYSVLVNDETTNLIYLGRGLRKGDPLSLYLFILCMKGISMLMRQTYRGDRMHG 60
Query: 127 CRVSRAAPQLSHLLFA-------------DDSLFFFETSQTQALEIKN 161
++ R P +SHLL D+++ +T QT +KN
Sbjct: 61 VQIFRNEPIMSHLLVVNGCFPFCKANCVEDENMKEIQTKQTMVKRMKN 108
>IMGA|Medtr4g129960.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
31059249-31058149 H EGN_Mt090430 20090702
Length = 344
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 376 GFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHG 435
G RWRIGDG + V + WL ++ + P V + ++DL++ G + W++ I
Sbjct: 6 GCRWRIGDGTQIRVMHDPWLRNEHGGWLASPQNQDVYDLFLADLMI-EGGKEWDVDKIFD 64
Query: 436 LFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYV 483
L + A + PL +VQDD +IW +G+YSVK+GYRI A V
Sbjct: 65 LLSFESANSVLKTPLFPSVQDDQVIWQEEQNGVYSVKTGYRIDARDVV 112
>IMGA|Medtr5g083860.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
31873419-31873604 H EGN_Mt090430 20090702
Length = 61
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%)
Query: 56 LGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKL 114
+GF +W+ +M+CVSS Y + +N + VGPII RGLRQG PLS YLF + AEGL L
Sbjct: 1 MGFDDKWIRWMMMCVSSATYSILMNFNRVGPIITGRGLRQGDPLSSYLFSMVAEGLCAL 59
>IMGA|Medtr5g025230.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
10087747-10088046 H EGN_Mt090430 20090702
Length = 99
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 40/70 (57%)
Query: 316 FNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAICS 375
FN ALLGK CWRL+ TNS+ P NF+ + +G PS+ WR + AKD I
Sbjct: 15 FNKALLGKQCWRLITNTNSIIAKVFKSRYFPRSNFMESTIGYQPSYSWRSMFNAKDFIDL 74
Query: 376 GFRWRIGDGQ 385
G R IG+GQ
Sbjct: 75 GARSSIGNGQ 84
>IMGA|Medtr4g042860.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
10317892-10316821 H EGN_Mt090430 20090702
Length = 341
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 308 LGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGIC 367
+G + L+ FNLA+L K R+ H S P NFL AG+G NP F WR I
Sbjct: 1 MGVKTLKDFNLAMLAKQGLRIFHHGESFLTTCLKSHYFPRCNFLQAGIGFNPGFTWRSIV 60
Query: 368 AAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARA 427
A R+ D +WL ++ P G V++LI R
Sbjct: 61 QA----------RLED---------IWLPHQYGHKLWSPKPSGSNIHLVAELIHEECGR- 100
Query: 428 WNLPLIHGLFNPSIAEIITSIPLAANVQDDILIW 461
WN L++ F P A+ I IP+ + Q D IW
Sbjct: 101 WNAHLVNEFFLPFKAQQILQIPVFPSQQQDCFIW 134
>IMGA|Medtr2g095830.1 Lipocalin chr02_pseudomolecule_IMGAG_V3
22005738-22006807 E EGN_Mt090430 20090702
Length = 168
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 376 GFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHG 435
G RWRIG+G+S+ VWT+ WL D +V+DL+ +WN +I G
Sbjct: 8 GQRWRIGNGKSIAVWTDPWLREDE---------------KVADLM---SGESWNWGMIAG 49
Query: 436 LFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDTEDAWRSRFWK 495
+FN + I+++ L +D +IW + G Y+V+S YR VD + S W
Sbjct: 50 IFNDHDRKAISNLALLNRDGEDRIIWKFNRYGNYTVRSAYRYAMETLVDNVEYRVSGEWL 109
Query: 496 TLCHFKFRRKXGIF 509
+ K ++ +F
Sbjct: 110 KMWSLKIPQRIKVF 123
>IMGA|Medtr7g077130.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
16025455-16024014 E EGN_Mt090430 20090702
Length = 70
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 91 RGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFE 150
R LRQ PLSP+LF++CAEGLS L ++E ++G AP + HLLFADD FF+
Sbjct: 7 RSLRQADPLSPHLFIICAEGLSSLIREAEVGEIISGTSTCSGAPLVFHLLFADDCFLFFK 66
Query: 151 TSQ 153
+
Sbjct: 67 AEE 69
>IMGA|Medtr2g055540.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
14903666-14903472 H EGN_Mt090430 20090702
Length = 64
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 6/63 (9%)
Query: 252 LIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWW--GGK----MRWLSWERLCVAKEN 305
+IK+V Q+IP++ MS FLIP SI E++++MN +WW GG ++WLSW++L V K +
Sbjct: 1 MIKSVLQSIPTYFMSIFLIPSSIGDEIEKIMNSFWWENGGNRNKGIKWLSWDKLSVHKRD 60
Query: 306 GGL 308
GG+
Sbjct: 61 GGM 63
>IMGA|Medtr4g107070.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr04_pseudomolecule_IMGAG_V3
23293240-23293037 H EGN_Mt090430 20090702
Length = 67
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 46/66 (69%), Gaps = 6/66 (9%)
Query: 265 MSSFLIPVSILVELQRLMNFYWWG-GK-----MRWLSWERLCVAKENGGLGFRHLQSFNL 318
MS F++P S++ ++++N +W+G G+ M W+SW++L + K +GG+GF+ L+ FN+
Sbjct: 1 MSIFILPTSLIDATEKMLNGFWYGHGRLLNMGMHWMSWDKLTIHKNHGGMGFKDLKYFNI 60
Query: 319 ALLGKH 324
A+L K
Sbjct: 61 AMLRKQ 66
>IMGA|Medtr6g009380.1 hypothetical protein
chr06_pseudomolecule_IMGAG_V3 1542043-1542210 H
EGN_Mt090430 20090702
Length = 55
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 52 VMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVL 106
+M L F RW + I +C+ S+ Y + VNG+ G ++P+RGL+QG PLS YLF+L
Sbjct: 1 MMINLCFHNRWANTISICMESIYYQMLVNGEREGHVVPKRGLKQGDPLSRYLFIL 55
>IMGA|Medtr5g084580.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
32212318-32210868 H EGN_Mt090430 20090702
Length = 201
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 223 RVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLM 282
R + + VR ++ W LS AG+ L K+V +A+P++ M S IP + L + Q++
Sbjct: 17 RAYFYSPKKVRNKLASWKASHLSFAGRVNLAKSVIEAVPTYPMMSCAIPKACLQDSQKVQ 76
Query: 283 NFYWWGGK-----MRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSL 335
+ WG + ++W + K GGLG R L+ N A L K W+L NS
Sbjct: 77 KAFIWGDNDFQKHVHAVNWSTMTKPKRCGGLGIRRLEEMNEACLLKLGWKLRRGKNSF 134
>IMGA|Medtr4g134320.1 RNA-directed DNA polymerase, related, related
chr04_pseudomolecule_IMGAG_V3 32379758-32380006 H
EGN_Mt090430 20090702
Length = 82
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 106 LCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILAT 165
+CA GLS L +S G + +V R AP L+HLL F+ + +++ +IK +L
Sbjct: 1 MCAVGLSALLKESGGSGDIHDIKVCRGAPILTHLLLLMIDFLFWRANLSESTKIKEVLCY 60
Query: 166 YEAASGQAVNWQKSGIFFSS 185
Y+A SG+A+N+QKS I +
Sbjct: 61 YKAVSGKAINFQKSKILVKA 80
>IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 31444078-31442691 H
EGN_Mt090430 20090702
Length = 404
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 376 GFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHG 435
G RW IG G +++ E W+ + P + V LI + WN PL+
Sbjct: 6 GTRWIIGSGYDISMINEPWIGMGLRVPPAAPDDLSYQGYSVGHLI-HQDVKTWNEPLVIC 64
Query: 436 LFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVASQYVDTEDAWRSRFWK 495
+F A+ I + PL V +D L+W +G YSV+S YR+ + D + FW
Sbjct: 65 IFEAGTAQQILNTPLFLQVNEDKLVWKPEKNGQYSVRSAYRVCVEEIADMSHLHTNGFWG 124
Query: 496 TLCHFKFRRK 505
+ K K
Sbjct: 125 GIWKLKVPPK 134
>IMGA|AC233668_9.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233668.2 20356-20538 H
EGN_Mt090430 20090702
Length = 60
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 209 RYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSF 263
+YLGLPS++GR + F F+KD + ++ W+ K L K +EV+IK V Q IPS+
Sbjct: 5 KYLGLPSMMGRSKEATFGFIKDRIWHKINSWSSKCLFKVSREVMIKPVLQFIPSY 59
>IMGA|Medtr3g013410.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
2559713-2560955 H EGN_Mt090430 20090702
Length = 176
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 290 KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGN 349
K+ W+ W+ +C+++E GGLG R L+ FN+ LL K CWR+L L G
Sbjct: 47 KIAWVDWDSICLSREEGGLGVRKLREFNVELLRKWCWRMLVDKEGLWYLVLKARYGEEGG 106
Query: 350 FLGAGVGRNPSFVWRGICAAKDAI 373
L G GR+ S WR + + + +
Sbjct: 107 RLKEG-GRDSSTWWRMVSSIRHGV 129
>IMGA|Medtr4g160710.1 RNA-directed DNA polymerase, related, putative
chr04_pseudomolecule_IMGAG_V3 40774925-40774579 H
EGN_Mt090430 20090702
Length = 77
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 119 EREGRLTGCRVSRAAPQLSHLLFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQK 178
E G + G +V R AP L+HLLF DD F ++ +A + L YE AS Q +N QK
Sbjct: 7 EARGEIHGIKVCRGAPLLTHLLFVDDCFLFCRANEKEAQALSEALKKYEEASRQPINLQK 66
Query: 179 SGI 181
S I
Sbjct: 67 SKI 69
>IMGA|Medtr1g107130.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 22528853-22529465 E
EGN_Mt090430 20090702
Length = 115
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 31/108 (28%)
Query: 140 LFADDSLFFFETSQTQALEIKNILATYEAASGQAVNWQKSGIFFSSNTSELDKTAVTGVF 199
LFA D L F + + +K+IL YEA S Q +N
Sbjct: 15 LFAYDCLLFLRAKENETQTMKHILFVYEARSRQLIN------------------------ 50
Query: 200 SVIAPLNHGRYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKA 247
+GRYLG S+IGR + F F+KD V ++++ W+ K LSKA
Sbjct: 51 -------NGRYLGPSSIIGRNKGDTFDFIKDQVWQIINSWSNKCLSKA 91
>IMGA|Medtr1g087030.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
17409058-17408195 H EGN_Mt090430 20090702
Length = 228
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 22 TRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNG 81
+R +GR G LKVD AYD VNW GFS+ W I ++S + V VNG
Sbjct: 21 SRKSGR-GLMMLKVDFKTAYDSVNWE---------GFSETWRQWISTYLASSRVPVQVNG 70
Query: 82 DEVGPIIPERGLRQGCPLSPYLFVLCAEGLS 112
+GLRQG P SP+ F++ AE L+
Sbjct: 71 ISTDKFSIPQGLRQGYPSSPFQFLIVAEELN 101
>IMGA|Medtr1g149770.1 contains similarity to reverse trancriptase,
related, related chr01_pseudomolecule_IMGAG_V3
33129977-33130712 E EGN_Mt090430 20090702
Length = 100
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 320 LLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAK-DAICSGFR 378
+L + WR++ SL P NFL A +G NPS+ WR I + + I
Sbjct: 1 MLARQGWRIIQNEESLFGSCLKRRYFPRTNFLNATLGYNPSYTWRSILQDRMEVIDHVGL 60
Query: 379 WRIGDGQSVNVWTELWL 395
WR+GDG+S +W + WL
Sbjct: 61 WRVGDGKSTKIWGDNWL 77
>IMGA|AC233571_22.1 hypothetical protein AC233571.2 95791-97088 H
EGN_Mt090430 20090702
Length = 158
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 57 GFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFC 116
GF W+ +M+CVS + Y + D VG II RG+ QG PLS YLF+L EG L
Sbjct: 96 GFGDTWIRWMMMCVSFITYSILRKFDRVGHIILGRGIPQGAPLSTYLFILVTEGKRLLNH 155
Query: 117 KS 118
KS
Sbjct: 156 KS 157
>IMGA|AC235675_13.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC235675.1 34455-34255 H
EGN_Mt090430 20090702
Length = 66
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 282 MNFYWWGG------KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSL 335
MN +WWG +++WLSW +L + KENGG+GF+ L NLALLGK WRL+ N L
Sbjct: 1 MNSFWWGNGGGLNKEIKWLSWSKLDL-KENGGMGFKDLYMSNLALLGKQVWRLVTNPNFL 59
>IMGA|Medtr2g129530.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
31333511-31334185 H EGN_Mt090430 20090702
Length = 122
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 7/52 (13%)
Query: 282 MNFYWWGG------KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWR 327
MN +WWG +++WLSW +L + KENGG+GF+ L NLALLGK WR
Sbjct: 1 MNSFWWGNGGGLNKEIKWLSWSKLDL-KENGGMGFKDLYMSNLALLGKQVWR 51
>IMGA|Medtr8g112180.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 25109448-25109765 H
EGN_Mt090430 20090702
Length = 105
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 382 GDGQSVNVWTELWLLRDNQFQVPLPILPGVEHIRVSDLILTHGARAWNLPLIHGLFNPSI 441
G+ V VW + WL N+ V I GVE++ VS+LI H A W + LFN
Sbjct: 4 GECSKVKVWLDPWLQDGNRGFVTSLIALGVENLIVSNLI-DHSAHVWWTDIFERLFNERD 62
Query: 442 AEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYR 476
A+ I +P+ +++ +W++ G YSV S YR
Sbjct: 63 AQTIIVMPIIDEEEEEKHVWNFKPHGEYSVSSIYR 97
>IMGA|Medtr6g031230.1 DEAD-box ATP-dependent RNA helicase 12,
putative chr06_pseudomolecule_IMGAG_V3 7153076-7152637 H
EGN_Mt090430 20090702
Length = 90
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 289 GKMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKH 324
G +RW+ ERL + KE GG+GFRH+ FNLA+LGK
Sbjct: 54 GGIRWMGRERLTMRKEWGGMGFRHIHDFNLAMLGKQ 89
>IMGA|Medtr3g030650.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
8360899-8363574 H EGN_Mt090430 20090702
Length = 139
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 92 GLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSHLLFADDSLFFFET 151
G++QG PL+P+ F+ AE LS K+E G T +VSR ++HL + DD+ FF
Sbjct: 68 GIQQGDPLTPFFFLPVAEALSMYVKKAEALGICTSFKVSRFGLSVTHLQYVDDTFFFIGK 127
Query: 152 SQTQALEIKNI 162
+ + L K +
Sbjct: 128 TAMENLWAKTL 138
>IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC235669.1 69436-68759 H EGN_Mt090430
20090702
Length = 225
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 4 RLLSDNVXVDFELIHSMKTRMTGRQGAFALKVDIFKAYDRVNWCYLQAVMQGLGFSQRWV 63
R ++DN + E++H + ++G K+D KAYDR NW +L+ + G GF +
Sbjct: 132 RGITDNAILAQEVVHFIH-HSHAKKGCIVSKIDHEKAYDRHNWDFLELTLHGFGFPSTTI 190
Query: 64 DLIMLCVSSVK---YWVGVNGDEVGP 86
L M CV S W GV D P
Sbjct: 191 SLNMSCVRSSNLSVLWNGVKTDHFTP 216
>IMGA|Medtr7g068430.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
14039604-14037230 H EGN_Mt090430 20090702
Length = 514
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 288 GGKMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPS 347
G K+ W+SW+ +C KE GGLG R + NL+LL K WRLL N+L
Sbjct: 10 GRKISWVSWKVVCPPKEVGGLGVRDVSLVNLSLLAKWKWRLLQGGNTLWKEILVERYGSK 69
Query: 348 -GNFLGAGVG---RNPSFVWRGICA-AK----DAICSGFRWRIGDGQSVNVWTELW 394
G FL GVG N S W+ + + AK D ++G+G + W W
Sbjct: 70 VGEFLEEGVGVWQTNASRWWKDLVSLAKGNEVDWFYEDVIRKVGNGATTGFWKTAW 125
>IMGA|Medtr6g031330.1 DEAD/DEAH box helicase, N-terminal
chr06_pseudomolecule_IMGAG_V3 7187502-7185125 E
EGN_Mt090430 20090702
Length = 153
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 289 GKMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKH 324
G +RW+ ERL + KE GG+GFRH+ FNLA+LGK
Sbjct: 117 GGIRWMGRERLTMRKEWGGMGFRHIHDFNLAMLGKQ 152
>IMGA|Medtr8g088300.1 Non-LTR retroelement reverse transcriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
18671133-18670665 H EGN_Mt090430 20090702
Length = 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 290 KMRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGN 349
++ W+ W C KE GGL R L+ F +ALLGK CWRL SL G+
Sbjct: 8 EISWIKWNFDCSNKEKGGLEVRRLRVFKMALLGKWCWRLKEEYGSLWVRVLSTRLWEVGH 67
Query: 350 FLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPIL 408
G S W + + + + IGD + W +LWL + ++ I
Sbjct: 68 LFHVE-GERGSVWWSNLVNISNGVTT-----IGDKMTFLFWWDLWLDEGDSKEMNAKIF 120
>IMGA|Medtr5g105670.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
42445166-42445565 H EGN_Mt090430 20090702
Length = 118
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 291 MRWLSWERLCVAKENGGLGFRHLQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNF 350
M LSW+RL K G+ F+ L+ F NSL + ++
Sbjct: 1 MYRLSWKRLMPPKNFDGMRFKSLKFFI-------------NPNSLLSRLFKTKYFLTSDY 47
Query: 351 LGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPILPG 410
L + + N S+VWR + AK S F+W G+++++W W D+ + L +
Sbjct: 48 LTSSLRHNLSYVWRSVWMAKIVTQSRFKWSANIGENMSIWDLEWFEIDHHIEKSLGLHTT 107
Query: 411 VEHIRVSDLIL 421
++++VSDL++
Sbjct: 108 FKNMKVSDLMV 118
>IMGA|Medtr2g104180.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
24503551-24503384 H EGN_Mt090430 20090702
Length = 55
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 224 VFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSIL 275
+F++++D + K + W+ K L KAG+E+LIK V Q +P++ MS FL+ +S L
Sbjct: 4 IFNYVRDRIWKRIESWHGKHLFKAGREILIKFVVQLVPAYQMSIFLLLMSTL 55
>IMGA|Medtr1g064980.1 RNA-directed DNA polymerase ; Ribonuclease H,
related chr01_pseudomolecule_IMGAG_V3 12753081-12752276
H EGN_Mt090430 20090702
Length = 137
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 172 QAVNWQKSGIFFSSNTSELDKTAVTGVFSVIAPLNHGRYLGLPSLIGRERRRVFSFLKDH 231
++VN QK F E+ + +A L H Y G P + GR R V++ + D
Sbjct: 9 KSVNRQKKSWFKGDRKYEIQDISTN---KFVADLGH--YPGFPLVKGRVSRYVYNDVVDK 63
Query: 232 VRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSFLIPVSILVELQRLMNFYWW 287
V K ++ W +L+K G+ L+K+V I + + +P + +L ++ + W
Sbjct: 64 VSKWLAAWKGTILNKVGQAYLVKSVTTTISVYTIQLHNLPTHVCKKLDKMARSFLW 119
>IMGA|Medtr3g086350.1 N-6 Adenine-specific DNA methylase
chr03_pseudomolecule_IMGAG_V3 20173394-20172638 H
EGN_Mt090430 20090702
Length = 131
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 33 LKVDIFKAYDRVNWCYLQAVMQGLGFSQRWVDLIMLCVSSVKYWVGVNGDEVGPIIPERG 92
KV K YD +NW +L + LGFS RW + I C+ +V VNG + I +RG
Sbjct: 68 FKVGFKKPYDSINWSFLDYMRTRLGFSARWCNWIQTCLFCGNLFVLVNGCSIEEINIQRG 127
Query: 93 LRQG 96
L+QG
Sbjct: 128 LKQG 131
>IMGA|Medtr3g103760.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
25622719-25621333 H EGN_Mt090430 20090702
Length = 441
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 349 NFLGAGVGRNPSFVWRGICAAKDAICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPIL 408
N L A + S +W I A+D + GF WR+G S + W+ W ++P I
Sbjct: 22 NTLLASARPSVSVIWSSILHARDVLKDGFSWRVGSDNS-SFWSCPWSSLGILGRIPPYID 80
Query: 409 PGVEHIRVSDLILTHGARAWNLPLIHGLFNPSIAEIITSIPLAANVQ-DDILIWHWTDSG 467
+ V D+I ++ +++ P A+ I +I N +D IWH +G
Sbjct: 81 IHDLQLTVKDVISSNNPHT---NILYTQLPPFAADTINNIHFKFNASVEDTFIWHNNKNG 137
Query: 468 IYSVKSGYRIVASQ 481
Y+ KSGY + S+
Sbjct: 138 TYTPKSGYSWLLSR 151