Jatropha Genome Database

JcCA0133161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0133161.10 + phase: 0 /partial
         (299 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g093490.1 hypothetical protein chr01_pseudomolecule_I...   251   3e-67

>IMGA|Medtr1g093490.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 19016346-19012558 E
           EGN_Mt090430 20090702
          Length = 551

 Score =  251 bits (641), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 134/277 (48%), Positives = 167/277 (60%), Gaps = 20/277 (7%)

Query: 27  GRLWIHAASKVPEEETIKAMEDFYREIYALNGITDIKFPEHYPVSRXXXXXXXXXXXXXX 86
           GRLWIHAA KVP+E TIKAME FY+EIYALNGITDI FP+HYPVSR              
Sbjct: 49  GRLWIHAAGKVPDESTIKAMECFYKEIYALNGITDINFPQHYPVSRLLGCVEVVGCLNRE 108

Query: 87  XXASWEAIPVGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAAVRGLIPV 146
             + WE +P   RLE  TD+CWLCE PQKLL+PFEMRGYQ VYNLE+KIYEAAVRGL PV
Sbjct: 109 EISCWEMVPESVRLEALTDYCWLCEQPQKLLIPFEMRGYQGVYNLERKIYEAAVRGLAPV 168

Query: 147 KGPMPVKFPLPNPRDPFSLRPGSVAMLPE--KASEVEKSSTLTXXXXXXXXXXTQFSKKD 204
             P+PVKFPLP+P DPFSL+PG V+ L    KA+EV+KSS+L+          TQFSKKD
Sbjct: 169 DSPLPVKFPLPDPSDPFSLKPGRVSALTRNLKATEVDKSSSLSLAIAGACAAATQFSKKD 228

Query: 205 QYFLXXXXXXXXXXXXXXDQAKDKL--------------LEQHNVPQNNFYEGSND-ESS 249
                             D   D++              +E+ N+P +   E  +D + S
Sbjct: 229 H---NSQSADRNNKPAKTDANHDEIQAARSYNLRPHPRSMEKGNIPSDELNEKFDDGDVS 285

Query: 250 VSNEMEQSNGIKDVESSSHSRTRADAKQLRAPAKVLS 286
             +E++ S+ + D  SS H   R+D +Q   P+  +S
Sbjct: 286 TDHEVKNSSKMNDESSSHHQSPRSDRRQHFMPSTKVS 322