Jatropha Genome Database

JcCA0131921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131921.10 + phase: 0 /pseudo
         (339 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g008510.1 hypothetical protein chr01_pseudomolecule_I...   212   2e-55

>IMGA|Medtr1g008510.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 792575-786573 E
           EGN_Mt090430 20090702
          Length = 579

 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/318 (43%), Positives = 191/318 (60%), Gaps = 37/318 (11%)

Query: 12  SDSKEIGEKRSSGELGEKQESAPKRIKMRDLHSVLRSEVHSEISTHHSKEEEANDQLQFG 71
           S SK + EKR +  LG+K E   KR+KM+DL SV+ +E         +  +E   Q  FG
Sbjct: 17  SASKVMSEKRVNSHLGDKHEPLRKRVKMKDLESVVAAE--------KAIGKENIVQSSFG 68

Query: 72  E-EMSQITSVPITLDPDASELGRTSRTVLSVEVNPATRPLDLNSE-------AYVADSSA 123
           + EMSQIT VP+T+D + S+  +  R+      + + R LDLN+E       +   D S+
Sbjct: 69  DNEMSQITKVPLTVDVNVSKEEQDGRST-----SGSPRVLDLNTEVCGTRYPSLYPDKSS 123

Query: 124 GHGSPEGTEACNKVSLLKQHNREHDYKRVTSRGIGLDLNAEDVTSSMNQELLSTSKNHDQ 183
           G G  E      ++   KQ   +     V +RGI +DLNAED T S+N    +  K H  
Sbjct: 124 GFG--EKLSKDKELLSEKQEREQLGGGDVNTRGINVDLNAEDDTRSVNVGPTNFHKEHGH 181

Query: 184 MKSRGDASECGSTTGPAEGKDPLKVWKEMKQNXXXXXXXXXXXXXXXXXXXXHGGIPMPK 243
            KS+ D SE GS+  P + +DP+++W EMK+N                    HGGIP+PK
Sbjct: 182 FKSK-DLSESGSSAEPPKERDPMRIWTEMKRNGFISTSTV------------HGGIPVPK 228

Query: 244 QRGRKSKNDVLKKKMELAKKEQVDRFTKIAAPSGLLNGLNPGIINHVRNRKQVHSIIEAL 303
           +RGRKSK+++L++KMELAK+EQ++RFTKIAAPSGLLN LNPGIINHVRNRKQV +IIE+L
Sbjct: 229 KRGRKSKSEILEQKMELAKREQINRFTKIAAPSGLLNDLNPGIINHVRNRKQVQTIIESL 288

Query: 304 VRSEKQENNCTEAKQDSH 321
           V +EK EN    ++Q +H
Sbjct: 289 V-TEKHENRSIGSRQAAH 305