Jatropha Genome Database
- JcCA0131361.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0131361.10 - phase: 2 /TE/pseudo/partial
(557 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g140780.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 66 4e-11
IMGA|Medtr4g140800.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 65 6e-11
IMGA|Medtr4g140830.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 65 7e-11
IMGA|Medtr4g140820.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 65 1e-10
IMGA|AC235671_8.1 HAT dimerisation AC235671.2 34285-36383 E EGN_... 63 3e-10
IMGA|Medtr4g140840.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 62 7e-10
IMGA|AC235022_13.1 Zinc finger, BED-type predicted; HAT dimerisa... 60 4e-09
IMGA|Medtr4g140790.1 HAT dimerisation chr04_pseudomolecule_IMGAG... 58 1e-08
IMGA|Medtr2g126790.1 Zinc finger, BED-type predicted; HAT dimeri... 54 2e-07
>IMGA|Medtr4g140780.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34612007-34615090 E EGN_Mt090430 20090702
Length = 612
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 452 SEFDNYLTTS-FEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAF 510
SE D YL S +F D D +L WW + N FP LS+LA +L+ P++TVA + F
Sbjct: 470 SELDVYLDESNLDFR---CDEDMDVLQWWKSNNNRFPDLSILACDLLSVPITTVASDFEF 526
Query: 511 SQGGNILDKTRSRMTPDSLEAQACVDDW 538
G + +K + RM P ++E + C W
Sbjct: 527 CMGSRVFNKYKDRMLPMNVETRMCTRTW 554
>IMGA|Medtr4g140800.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34620805-34623647 E EGN_Mt090430 20090702
Length = 480
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 440 QRQKRTRESSSISEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAA 499
QRQ T + S+ D YL S Y D D +L WW R+ N FP LS+LA +L+
Sbjct: 354 QRQLVTE--TEKSQLDVYLDESNLDFHCYEDMD--VLQWWKRNNNRFPDLSILACDLLSF 409
Query: 500 PVSTVAVEQAFSQGGNILDKTRSRMTPDSLEAQACVDDW 538
P++TVA + F G + +K + RM P+++E + C W
Sbjct: 410 PITTVASDFEFCMGSRVFNKYKDRMLPNNVETRICTRTW 448
>IMGA|Medtr4g140830.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34628699-34631682 H EGN_Mt090430 20090702
Length = 575
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 440 QRQKRTRESSSISEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAA 499
QRQ T + S+ D YL S Y D D +L WW R+ N FP LS+LA +L+
Sbjct: 446 QRQLVTE--TRKSQLDVYLDESNLDFHCYEDMD--VLQWWKRNNNRFPDLSILACDLLSV 501
Query: 500 PVSTVAVEQAFSQGGNILDKTRSRMTPDSLEAQACVDDW 538
P++TVA + F G + +K R P ++E + C W
Sbjct: 502 PIATVASDSEFCMGSRVFNKYEDRTLPTNVETRICTRSW 540
>IMGA|Medtr4g140820.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34626717-34627221 H EGN_Mt090430 20090702
Length = 135
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 452 SEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFS 511
SE D Y S +Y D D +L WW ++N FP LS+LA +L+ P++TVA + F
Sbjct: 13 SELDVYFDESDLNFGSYEDMD--VLQWWKSNSNRFPDLSILACDLLSVPIATVASDFEFC 70
Query: 512 QGGNILDKTRSRMTPDSLEAQACVDDW 538
G +L+K + RM P +E + C W
Sbjct: 71 MGSRVLNKYKDRMLPMDVETRICTRSW 97
>IMGA|AC235671_8.1 HAT dimerisation AC235671.2 34285-36383 E
EGN_Mt090430 20090702
Length = 580
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 452 SEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFS 511
S+ D YL S YA+ D +L WW + + FP LS+LA +L+ P++ VA + F
Sbjct: 464 SQLDVYLDESVLDFRCYAEMD--VLQWWKSNNDRFPDLSILACDLLSVPIAAVASDSEFC 521
Query: 512 QGGNILDKTRSRMTPDSLEAQACVDDW 538
G + +K + RM P ++EA+ C W
Sbjct: 522 MGSRVFNKYKDRMLPMNVEARICTRSW 548
>IMGA|Medtr4g140840.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34632644-34634683 E EGN_Mt090430 20090702
Length = 575
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 452 SEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFS 511
S+ D YL S Y D D +L WW + N FP LS+LA+ +L+ PV+T+A + F
Sbjct: 465 SQLDIYLAESNLDFRCYEDMD--VLQWWKSNNNRFPDLSILARDLLSVPVNTIASDLDFC 522
Query: 512 QGGNILDKTRSRMTPDSLEAQACVDDW 538
G ++ +K + RM P +L+A+ C +W
Sbjct: 523 IGLHVFNKYKDRMLPMNLDARFCTRNW 549
>IMGA|AC235022_13.1 Zinc finger, BED-type predicted; HAT dimerisation
AC235022.1 87203-82116 E EGN_Mt090430 20090702
Length = 1025
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 452 SEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFS 511
SE D YL S DF +L WW + +P LS +A+ IL+ PVSTV + F
Sbjct: 926 SELDQYLEESLLPRV----PDFDVLGWWKLNKLKYPTLSKMARDILSIPVSTVPSDSIFD 981
Query: 512 QGGNILDKTRSRMTPDSLEAQACVDDW 538
+ +D+ RS + P+++EA C DW
Sbjct: 982 KKSKEMDQYRSSLRPETVEALVCAKDW 1008
>IMGA|Medtr4g140790.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
34617776-34619868 E EGN_Mt090430 20090702
Length = 577
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 469 ADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDKTRSRMTPDS 528
+ D +L WW + + +P LS+LA +L+ P++TVA + F G + +K + RM P
Sbjct: 471 CNEDMDVLQWWKSNNDRYPDLSILACDLLSVPITTVASDFEFCMGSRVFNKYKDRMLPMD 530
Query: 529 LEAQACVDDW 538
+E + C W
Sbjct: 531 VETRICARSW 540
>IMGA|Medtr2g126790.1 Zinc finger, BED-type predicted; HAT
dimerisation chr02_pseudomolecule_IMGAG_V3
30782400-30785624 E EGN_Mt090430 20090702
Length = 696
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 452 SEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFS 511
SE + YL E S +F IL WW + +P LS +A IL+ PVST++ + F
Sbjct: 595 SELNVYLEEPLESSAQ----EFDILSWWRINGLKYPTLSRMASDILSMPVSTLSADSIFD 650
Query: 512 QGGNILDKTRSRMTPDSLEAQACVDDW 538
+D RS + +LEA C DW
Sbjct: 651 TEIRKMDNYRSLLDSVTLEALICTKDW 677