Jatropha Genome Database

JcCA0128181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128181.10 - phase: 0 /partial
         (269 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g094760.1 hypothetical protein chr05_pseudomolecule_I...   265   2e-71

>IMGA|Medtr5g094760.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 37529280-37526629 H
           EGN_Mt090430 20090702
          Length = 387

 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 43  SAKIQSAIQSLTSITKIPSTILSAQDPASSLLHDSNVSTAISALLREPDSGAGDNNLCRW 102
           S KIQ A+QSL +I     +I S+  P S +L++  +   I+ LLR+P SGAGDNNLCRW
Sbjct: 23  SDKIQFALQSLCTIVNPTLSITSSTTPLS-ILNELKIYNQIATLLRQPSSGAGDNNLCRW 81

Query: 103 FYDTFQSTSPQLQLVVLRFVPIIAGLYLSRVPLRKPLAGFEAVLLALYAHETTSRNGQAI 162
            YDTFQS    LQL VLRF+PIIAG+YLSRV  RKP AGFEAVLLALYAHET SR G+A+
Sbjct: 82  LYDTFQSNVGDLQLTVLRFLPIIAGVYLSRVADRKPQAGFEAVLLALYAHETNSRAGEAV 141

Query: 163 AVNIPDLSNSSVYHETKE-TSKNNATDLNLAVISPSLEPHGTVRSTRRARIVGVALELYF 221
            V IPD+S+ SVYHE K   +KN ATDLN+ V+SPSLEPHGTVRSTRRARIVG+A EL++
Sbjct: 142 TVTIPDMSHPSVYHEFKAVVNKNGATDLNIVVLSPSLEPHGTVRSTRRARIVGIAFELFY 201

Query: 222 SKLSLMPIGSKIDFCEFCELWG 243
           +K+S MP+  KIDFC+FC++W 
Sbjct: 202 NKISQMPVAPKIDFCKFCKIWA 223