Jatropha Genome Database
- JcCA0127891.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0127891.10 - phase: 0 /TE/partial
(204 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 191 2e-49
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 188 2e-48
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 178 1e-45
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 155 1e-38
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 142 1e-34
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 117 3e-27
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 112 1e-25
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 104 2e-23
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 100 1e-21
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 95 3e-20
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 87 5e-18
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 87 8e-18
IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse transcrip... 61 4e-10
IMGA|Medtr3g059230.1 gag-pol polyprotein, putative chr03_pseudom... 55 2e-08
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 54 8e-08
IMGA|Medtr3g076160.1 gag-pol polyprotein, related chr03_pseudomo... 48 3e-06
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 99/121 (81%)
Query: 84 IAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTD 143
+ YP W+ANIVPVPKKDGKVRMCVD+RDLNKA PKD+FPLPHID+LVD A ++ S D
Sbjct: 3 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 62
Query: 144 LAVGYNQIMMYLPDKEKTAFTTEWGTYCYRVMPFGLKNAGATYQRMATTIFHDMIHKEVE 203
GYNQI M D+EKT+F T WGT+CY+VMPFGL NAGATYQR TT+FHDMIHKEVE
Sbjct: 63 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 122
Query: 204 V 204
V
Sbjct: 123 V 123
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 98/121 (80%)
Query: 84 IAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTD 143
+ YP W+ANIVPVPKKDGKVRMCVD+RDLNKA PKD+FPLPHID+LVD A ++ S D
Sbjct: 3 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 62
Query: 144 LAVGYNQIMMYLPDKEKTAFTTEWGTYCYRVMPFGLKNAGATYQRMATTIFHDMIHKEVE 203
GYNQI M D+EKT+F T WGT+CY+VM FGL NAGATYQR TT+FHDMIHKEVE
Sbjct: 63 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVE 122
Query: 204 V 204
V
Sbjct: 123 V 123
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/126 (67%), Positives = 99/126 (78%), Gaps = 2/126 (1%)
Query: 79 KFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEM 138
+F+ P + +ANIVPVPKKDGKVRM VD+RDLNKA PKD+FPLPHID+LVD A ++
Sbjct: 132 RFVAPSS--DSVANIVPVPKKDGKVRMSVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKV 189
Query: 139 VSLTDLAVGYNQIMMYLPDKEKTAFTTEWGTYCYRVMPFGLKNAGATYQRMATTIFHDMI 198
S D GYNQI M D+EKT+F T WGT+CY+VMPFGL NAGATYQR TT+FHDMI
Sbjct: 190 FSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMI 249
Query: 199 HKEVEV 204
HKEVEV
Sbjct: 250 HKEVEV 255
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 103/169 (60%)
Query: 11 REYISECLKKFADCFMWKTSDITGIDPTIVVHKIPVYPEAKPVKQKLRRLKMEWSLKIKE 70
R + CLK+ D F W +D+ IDP++ H++ V P V Q+ R+ E S+ ++
Sbjct: 140 RAQLVACLKQNPDLFAWSRADMPVIDPSVACHQLTVDPGISVVAQRRRKQSPEKSVAAEK 199
Query: 71 EIAKQLENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLV 130
+ LE KFI Y TWL+N+V V K +GK RM VDY DLN+ CPKD +PLP+ID LV
Sbjct: 200 TVKDFLEEKFILEAKYTTWLSNVVLVKKSNGKWRMSVDYTDLNRVCPKDAYPLPNIDKLV 259
Query: 131 DRMAGHEMVSLTDLAVGYNQIMMYLPDKEKTAFTTEWGTYCYRVMPFGL 179
D +G +++S D GYNQI M DK KT F TE G Y Y VMPFGL
Sbjct: 260 DNSSGFKLLSFMDAYFGYNQIPMVEGDKMKTTFMTESGNYYYNVMPFGL 308
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 87/137 (63%)
Query: 68 IKEEIAKQLENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHID 127
+ EE+ K ++ +FI I YPTWLAN V V K++GK RMCVDY DLN CPK +PLP+ID
Sbjct: 9 VDEEVKKLVDARFISEIKYPTWLANTVLVKKENGKWRMCVDYTDLNMVCPKYPYPLPNID 68
Query: 128 LLVDRMAGHEMVSLTDLAVGYNQIMMYLPDKEKTAFTTEWGTYCYRVMPFGLKNAGATYQ 187
L+D +G + +S D GYNQI M D KTAF T Y Y VM FGLKNAGAT+Q
Sbjct: 69 HLIDNASGFKTLSFMDAYSGYNQIRMDPLDAPKTAFMTNTKNYHYEVMYFGLKNAGATFQ 128
Query: 188 RMATTIFHDMIHKEVEV 204
R T F I + EV
Sbjct: 129 RSMDTAFSQQIGRNREV 145
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 69/100 (69%)
Query: 105 MCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMYLPDKEKTAFT 164
MC DY +LNK CPKD +PLP ID LV + ++++S D GYN+I M+L D+EKTAF
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 165 TEWGTYCYRVMPFGLKNAGATYQRMATTIFHDMIHKEVEV 204
T+ YCY+ MPFGL+N GAT+QR+ +F I K +EV
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIEV 100
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 112 bits (279), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 42 HKIPVYPEAKPVKQKLRRLKMEWSLKIKEEIAKQLENKFIEPIAYPTWLANIVPVPKKDG 101
H IP+ ++ PVK K R +I++ + + L+ I+P + P + ++ V KKDG
Sbjct: 574 HAIPLLTDSNPVKVKPYRYAHSQKTQIEKMVLEMLQQGIIQPSSSPF-SSPVLLVKKKDG 632
Query: 102 KVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMYLPDKEKT 161
R C DYR LN KD FP+P +D L+D + G S DL GY+QI++ D+ KT
Sbjct: 633 SWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAAYFSKLDLLSGYHQILVKSEDRHKT 692
Query: 162 AFTTEWGTYCYRVMPFGLKNAGATYQRMATTIFHDMIHKEVEV 204
AF T G Y + VMPFGL NA A++Q + +F +++ + V V
Sbjct: 693 AFRTHQGLYEWLVMPFGLSNAPASFQNLMNKVFCNLLRRSVLV 735
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 28 KTSDITGIDPTIVVHKIPVYPEAK-PVKQKLRRLKMEWSLKIKEEIAKQLENKFIEPIAY 86
K D+ D + ++ + +P+AK P+ + + +I++++A+ L I P +
Sbjct: 130 KNKDVAQEDLSSIIEQ---FPKAKGPINVRPYKYPHHQKEEIEKQVAELLAAGVIRP-SM 185
Query: 87 PTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAV 146
+ + ++ V KKD RMCVDYR LNKA D +P+P +D L+D + G + S DL
Sbjct: 186 SAYSSPVILVKKKDKSWRMCVDYRALNKARIPDKYPIPVVDELLDELYGATIFSKIDLKS 245
Query: 147 GYNQIMMYLPDKEKTAFTTEWGTYCYRVMPFGLKNAGATYQRMATTIFHDMIHKEVEV 204
GY+QI ++ D KTAF T G Y Y VMPFGL NA AT+Q IF + K V V
Sbjct: 246 GYHQIRVHENDIHKTAFRTHNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLV 303
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 99.8 bits (247), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Query: 42 HKIPVYPEAKPVKQKLRRLKMEWSLKIKEEIAKQLENKFIEPIAYPTWLANIVPVPKKDG 101
H IP+ P PV K R + I L + I P P + + ++ V KKDG
Sbjct: 562 HHIPLLPNTPPVNVKPYRYPHSQKEAMTTIIHDMLHDGIIVPSTSP-YSSPVLLVRKKDG 620
Query: 102 KVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMYLPDKEKT 161
R CVDYR LN D FP+P ID L D + + S TDL GY+QI + D KT
Sbjct: 621 SWRFCVDYRALNAVTICDRFPIPTIDELFDELGSASLFSKTDLRSGYHQIRVVPEDTHKT 680
Query: 162 AFTTEWGTYCYRVMPFGLKNAGATYQ 187
F T G Y + VMPFGL NA +T+Q
Sbjct: 681 TFRTFDGHYEFLVMPFGLSNAPSTFQ 706
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 62/100 (62%)
Query: 105 MCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMYLPDKEKTAFT 164
M V+Y DL++ CPKD +PL +ID LVD +G+++ S D YNQI + D++KT F
Sbjct: 1 MSVEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFM 60
Query: 165 TEWGTYCYRVMPFGLKNAGATYQRMATTIFHDMIHKEVEV 204
E G + Y VM F LKN G TYQRM +F D I ++V
Sbjct: 61 VEAGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKV 100
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 50/71 (70%)
Query: 115 ACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMYLPDKEKTAFTTEWGTYCYRV 174
AC KD +PLP+ID LVD +G+++ S D YNQI+M DK+KTAF TE G Y Y V
Sbjct: 2 ACRKDAYPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNV 61
Query: 175 MPFGLKNAGAT 185
MPFGL+N GAT
Sbjct: 62 MPFGLRNMGAT 72
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 76 LENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAG 135
L + I+P P + ++++ V KK G R CVDYR LN KD FPLP ID L+D +
Sbjct: 2 LSSGLIQPSRGP-FSSHVLLVKKKVGSWRCCVDYRALNAI--KDRFPLPTIDELLDDLGK 58
Query: 136 HEMVSLTDLAVGYNQIMMYLPDKEKTAFTTEWGTYCYRVMPFGLKNAGATYQRMATTIFH 195
S DL G++QI M D KTAF T G Y +VMPFGL NA +T++ +F
Sbjct: 59 ASWFSKLDLQQGFHQIRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNLFQ 118
Query: 196 DMIHK 200
+ K
Sbjct: 119 PFLRK 123
>IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein AC233082.3 19216-16757 H
EGN_Mt090430 20090702
Length = 819
Score = 60.8 bits (146), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 42 HKIPVYPEAKPVKQKLRRLKMEWSLKIKEEIAKQLENKFIEPIAYPTWLANIVPVPKKDG 101
H IP+ P P+ K R + I L+N I P P + + ++ V KKDG
Sbjct: 721 HHIPLLPNTPPINVKPYRYPHSQKDAMTTLIRDMLQNGTIMPSTSP-FSSPVLLVRKKDG 779
Query: 102 KVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAG 135
R CVDYR LN KD FP+P ID L+D +
Sbjct: 780 TWRFCVDYRALNAVTVKDRFPIPTIDELLDELGA 813
>IMGA|Medtr3g059230.1 gag-pol polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 13292042-13291812 H
EGN_Mt090430 20090702
Length = 76
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 18 LKKFADCFMWKTSDITGIDPTIVVHKIPVYPEAKPVKQKLRRLKMEWSLKIKEEIAKQLE 77
L+K D F W D+ GIDP + H++ + P A+ V+Q+ R++ ME ++EE K +E
Sbjct: 9 LRKNLDVFAWSDKDMPGIDPNFICHRLAIDPMARVVQQRKRKMGMEKQKAVQEETHKLVE 68
Query: 78 NKFIEPI 84
KFI +
Sbjct: 69 AKFIREV 75
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 40 VVHKIPVYPEAKPVKQKLRRLKMEWSLKIKEEIAKQLENKFIEPIAYPTWLANIVPVPKK 99
+ HKI + P + R+ + + ++E+I L FI + + ++ VPKK
Sbjct: 32 IQHKIDLIPCSSLPNLPHYRMSSKENEIVREQIEDLLRKGFIRE-SMSSCDVPVLLVPKK 90
Query: 100 DGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMYLPDKE 159
+ R CV+ R +NK K FP+P ++ ++D + + + D+
Sbjct: 91 GNQWRKCVESRVINKITIKYQFPIPRLEDMLDE---------------FQNLRIRPGDER 135
Query: 160 KTAFTTEWGTYCYRVMPFGLKNAGATYQRMATTI 193
+T F ++ G Y VMPF L NA +T+ R+ +
Sbjct: 136 QTYFKSKDGLYESLVMPFRLSNAPSTFMRLMNQV 169
>IMGA|Medtr3g076160.1 gag-pol polyprotein, related
chr03_pseudomolecule_IMGAG_V3 17551397-17550407 H
EGN_Mt090430 20090702
Length = 220
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 16 ECLKKFADCFMWKTSDITGIDPTIVVHKIPVYPEAKPVKQKLRRLKMEWSLKIKE 70
ECL+ A+ F + + GIDP++ HK+ V PEAKP+ QK R E + +E
Sbjct: 164 ECLRANAELFACSSEKMLGIDPSVACHKLNVNPEAKPMSQKRRHQSPEKAQTARE 218