Jatropha Genome Database

JcCA0127871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127871.10 + phase: 0 /partial
         (336 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g095630.1 Protein of unknown function Met10 chr02_pse...   138   3e-33

>IMGA|Medtr2g095630.1 Protein of unknown function Met10
           chr02_pseudomolecule_IMGAG_V3 21876039-21881430 H
           EGN_Mt090430 20090702
          Length = 350

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 94/139 (67%)

Query: 1   KNYPRIKTIVNKVGTITNEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 60
           KN P+I+T+ NK+ +I NE+R  + E+LAG + +VT + + G  F +D  +VYWNSRL  
Sbjct: 106 KNKPKIQTVANKIDSIHNEYRTMQLEVLAGNHSLVTTLAENGLRFHVDLAIVYWNSRLGT 165

Query: 61  EHMRLVSQFKPGETICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLRLNAKLNKVDD 120
           E  RL+S F   + +CD+FAG+GP AI AA+    V+ANDLNP + +YL  N+ LNK++ 
Sbjct: 166 ERQRLLSGFTRNDVVCDVFAGVGPLAISAAKIVKRVFANDLNPHAVEYLERNSVLNKLEK 225

Query: 121 RIFPYSMDARKFISQLMAA 139
           +I  + MD R+FI  + A+
Sbjct: 226 KIKVFKMDGRRFIMAMFAS 244



 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 248 VDHVVMNLPASALQFLDAFRGVIKKKDWMGQL--PWIHCYCFIRANQTEETIISEAESAL 305
           +  VVMNLP  A +FLDAFRG+ K +   G+   P IH Y F +A   E         AL
Sbjct: 250 ITQVVMNLPNDAAEFLDAFRGIYKDRPKDGEFTYPMIHVYGFSKAEDPEFDFHERIRIAL 309

Query: 306 GACIQDPVFHRVREVAPNK 324
                +    RVR VAP K
Sbjct: 310 LEVAVNVDMRRVRLVAPGK 328