Jatropha Genome Database

JcCA0127101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127101.10 - phase: 1 /partial
         (207 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g010600.1 hypothetical protein chr02_pseudomolecule_I...   305   1e-83
IMGA|Medtr3g130490.1 hypothetical protein chr03_pseudomolecule_I...   166   5e-42

>IMGA|Medtr2g010600.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 2614481-2620076 E
           EGN_Mt090430 20090702
          Length = 262

 Score =  305 bits (780), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 136/198 (68%), Positives = 175/198 (88%)

Query: 9   VSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHVGPDTCSVVSLLLKEEETEAWGVEPY 68
           +S +EG  SCT+E+ +A+PILKKAYGD M KVLHVGPD+CSVVS LL E++TEAWG+EPY
Sbjct: 64  LSKLEGASSCTLELLQALPILKKAYGDSMHKVLHVGPDSCSVVSSLLVEDDTEAWGIEPY 123

Query: 69  DIEDVDSHCRALVQKGNVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNRTLPELAR 128
           +++DV + C++LV+KG VRVAD+KFPLPYR KSF LVIVSDALDYLSP+YLN+TLPEL R
Sbjct: 124 ELDDVGAKCKSLVRKGIVRVADLKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPELVR 183

Query: 129 VSSEGLIIFTGFPGQHRSKVAEVSKFGKAAKLRSLSWWTRYFIQTSLDENEAAVKKFDQA 188
           VS++G++IF+G+PGQ R++  EV+KFG+ AKLRS SWW R+F+QTSL+ENE A KKF+QA
Sbjct: 184 VSADGVVIFSGYPGQQRARGGEVAKFGRPAKLRSSSWWIRFFVQTSLEENETAGKKFEQA 243

Query: 189 AAKKSYSPGCQIFHLKAY 206
           +AKK+Y+P CQ+FHLK+Y
Sbjct: 244 SAKKAYAPACQVFHLKSY 261


>IMGA|Medtr3g130490.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 33144888-33142713 E
           EGN_Mt090430 20090702
          Length = 186

 Score =  166 bits (421), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 128/201 (63%), Gaps = 36/201 (17%)

Query: 9   VSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHV---GPDTCSV-VSLLLKEEETEAWG 64
           +S   GD+ C+ EVQ+ IP+++KAYGD + KVLHV     DTC V + +++ + ++    
Sbjct: 16  ISGDHGDYLCSGEVQQGIPVVQKAYGDSIHKVLHVVLVQTDTCYVRMPIVIAKHKS---- 71

Query: 65  VEPYDIEDVDSHCRALVQKGNVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNRTLP 124
                           V +GNV VADIKFPLPYRPKSFSLVIVSD LDYLS   L+ ++ 
Sbjct: 72  ----------------VDRGNVSVADIKFPLPYRPKSFSLVIVSDTLDYLS---LDTSIK 112

Query: 125 ELARVSSEGLIIFTGFPGQHRSKVAEVSKFGKAAKLRSLSWWTRYFIQTSLDENEAAVKK 184
                  E      GFP   ++KVA+VSKFG+AAK+RS SW   +F+Q +L+ENEA  KK
Sbjct: 113 LFLIWRDE------GFPTNLKAKVADVSKFGRAAKMRSGSW---FFLQNNLEENEAVNKK 163

Query: 185 FDQAAAKKSYSPGCQIFHLKA 205
           F+QA+ + SY P CQIFHLK+
Sbjct: 164 FEQASTQNSYVPKCQIFHLKS 184