Jatropha Genome Database

JcCA0126401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0126401.10 + phase: 0 /pseudo
         (286 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g019320.1 Protein phosphatase 2C; chr01_pseudomolecul...   142   2e-34
IMGA|Medtr3g139640.1 Protein phosphatase 2C; chr03_pseudomolecul...   134   5e-32
IMGA|Medtr4g159800.1 Protein phosphatase 2C; chr04_pseudomolecul...    59   3e-09
IMGA|Medtr5g087970.1 Protein phosphatase 2C; chr05_pseudomolecul...    54   1e-07

>IMGA|Medtr1g019320.1 Protein phosphatase 2C;
           chr01_pseudomolecule_IMGAG_V3 3858949-3853419 E
           EGN_Mt090430 20090702
          Length = 526

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 97/154 (62%)

Query: 121 SEINLPKSVEIEDMIEDSQIIAKAIIVESSNEVQVPTAKLLIAAVSPNADITDGSELRAS 180
           SE+  P S++IE ++    I+A+   +  SN       + L  AV+ + +I   S+L+ S
Sbjct: 125 SEVGTPCSIDIEKIVSSVNIVAQTADLGESNVDTDIMNEPLAVAVNLDQEIGVESDLKPS 184

Query: 181 AVVLKLPSESNLSKGTSRSVFEIDCVPLWGSVSICGRRPEMEDSLAAVPRFAKIPIKMLI 240
            V  +LP E   S    RSVFE+D  PLWG +S+CGRRPEMED++A VPRF +IPI+MLI
Sbjct: 185 TVAHQLPQEEGTSVAVVRSVFELDYTPLWGFISLCGRRPEMEDAVATVPRFLEIPIQMLI 244

Query: 241 GDHVVNGLNESLTHLTSHFFGVYDGHGGAQVHLY 274
           GD   +G+N       +HFFGVYDGHGG+QV  Y
Sbjct: 245 GDRAPDGINRCFRPQMTHFFGVYDGHGGSQVANY 278


>IMGA|Medtr3g139640.1 Protein phosphatase 2C;
           chr03_pseudomolecule_IMGAG_V3 35970726-35967466 E
           EGN_Mt090430 20090702
          Length = 549

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 148/302 (49%), Gaps = 36/302 (11%)

Query: 4   AVAMTLSLGNSICDNSGIATHVEITRLKLVTDAVSLLSDPAKVVSDEAVAVCSGSSDDAK 63
           +VA+ L  GNS+CDN  IATH++++ +K++ +A  L+S+    +S +   + SG      
Sbjct: 5   SVAVPLIAGNSVCDNQTIATHMDVSAIKMMANA-ELISNAITTISADTTFISSGEDHIGD 63

Query: 64  N---------------GME-----FTTLSESKDG----GVGGNDSVPTDAMIQXXXXXXX 99
           N               G E        +S+S D      V  +DS+     ++       
Sbjct: 64  NLDDVVGVSAVPPPLHGREGEILLLNMISQSSDELLVPEVDEDDSLS----LEGDPIIYS 119

Query: 100 XXXXXXTNGTI-SXXXXXXXXGSEINLPKSVEIEDMIEDSQIIAKAIIVESSN-EVQVPT 157
                  NG++           S      S++I+  I   +I+A+A +++ SN E  + +
Sbjct: 120 TLSVTSENGSVCGDEFFSAEDNSYFRARSSMDIDKNISSVEIVARAAVIDESNVETDIMS 179

Query: 158 AKLLIAAVSPNADITDGSELRASAVVLKLPSESNLSKGTSRSVFEIDCVPLWGSVSICGR 217
             L +A    +        L  +  + +LP +  +S    RSVFE+DC PLWG  S+CG+
Sbjct: 180 EPLAVALSIGDETGVRSVPLPTTVALHQLPLKKGVSGTVGRSVFELDCTPLWGFTSLCGK 239

Query: 218 RPEMEDSLAAVPRFAKIPIKMLIGDHVV-----NGLNESLTHLTSHFFGVYDGHGGAQVH 272
           RPEMED++A  PR  KIPI+ML G+        +G+N+  +  T HFFGVYDGHGG+QV 
Sbjct: 240 RPEMEDAVAIAPRMLKIPIQMLNGNSKYDGMNKDGMNKDFSQQTIHFFGVYDGHGGSQVA 299

Query: 273 LY 274
            Y
Sbjct: 300 NY 301


>IMGA|Medtr4g159800.1 Protein phosphatase 2C;
           chr04_pseudomolecule_IMGAG_V3 40383682-40391460 E
           EGN_Mt090430 20090702
          Length = 402

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 209 WGSVSICGRRPEMEDSLAAVPRFAKIPIKMLIGDHVVNGLNESLTHLTSHFFGVYDGHGG 268
           WG  S+ GRR EMED++A +P F        +G     G   S      HFFGVYDGHGG
Sbjct: 103 WGHTSVIGRRREMEDAVAVIPGFMSRTCDH-VGGCTAPGSRSSGEISPIHFFGVYDGHGG 161

Query: 269 AQVHLY 274
           AQV  +
Sbjct: 162 AQVAKF 167


>IMGA|Medtr5g087970.1 Protein phosphatase 2C;
           chr05_pseudomolecule_IMGAG_V3 34058874-34061096 F
           EGN_Mt090430 20090702
          Length = 391

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 20/67 (29%)

Query: 205 CVPLWGSVSICGRRPEMEDSLAAVPRFAKIPIKMLIGDHVVNGLNESLTHLTSHFFGVYD 264
           C P +G  S+CGRR EMED+++  P F +                        HFFGVYD
Sbjct: 98  CSPKYGITSVCGRRREMEDAVSVHPSFCR--------------------EKQDHFFGVYD 137

Query: 265 GHGGAQV 271
           GHG + V
Sbjct: 138 GHGCSHV 144