Jatropha Genome Database

JcCA0123391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0123391.10 + phase: 0 /pseudo/partial
         (113 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g084420.1 Eukaryotic phosphomannomutase chr07_pseudom...   171   6e-44
IMGA|Medtr7g084420.4 Eukaryotic phosphomannomutase chr07_pseudom...   171   1e-43
IMGA|Medtr7g084420.2 Eukaryotic phosphomannomutase chr07_pseudom...   164   7e-42
IMGA|Medtr7g084420.3 Eukaryotic phosphomannomutase chr07_pseudom...   114   8e-27

>IMGA|Medtr7g084420.1 Eukaryotic phosphomannomutase
           chr07_pseudomolecule_IMGAG_V3 18220114-18224105 F
           EGN_Mt090430 20090702
          Length = 247

 Score =  171 bits (434), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 96/121 (79%), Gaps = 9/121 (7%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFEKYDKV NIR KMVS+LREKF+HLNLTFSIGGQISFD    
Sbjct: 127 MLNVSPIGRNCSQEERDEFEKYDKVQNIRSKMVSILREKFAHLNLTFSIGGQISFDVFPQ 186

Query: 58  A*DTSMSLMKSTS------FGDKTYKGGNDYEIYESDRTVGHTVTSPDDTVVQCKALFLA 111
             D +  L           FGDKTYKGGND+EIYES+RT+GHTVTSP+DT+ QC +LFL 
Sbjct: 187 GWDKTYCLRYLDGFNEIHFFGDKTYKGGNDHEIYESERTIGHTVTSPEDTIKQCTSLFLG 246

Query: 112 N 112
           +
Sbjct: 247 H 247


>IMGA|Medtr7g084420.4 Eukaryotic phosphomannomutase
           chr07_pseudomolecule_IMGAG_V3 18220114-18224105 F
           EGN_Mt090430 20090702
          Length = 121

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 97/121 (80%), Gaps = 9/121 (7%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFEKYDKV NIR KMVS+LREKF+HLNLTFSIGGQISFD    
Sbjct: 1   MLNVSPIGRNCSQEERDEFEKYDKVQNIRSKMVSILREKFAHLNLTFSIGGQISFDVFPQ 60

Query: 58  A*DTSMSLM------KSTSFGDKTYKGGNDYEIYESDRTVGHTVTSPDDTVVQCKALFLA 111
             D +  L       +   FGDKTYKGGND+EIYES+RT+GHTVTSP+DT+ QC +LFL 
Sbjct: 61  GWDKTYCLRYLDGFNEIHFFGDKTYKGGNDHEIYESERTIGHTVTSPEDTIKQCTSLFLG 120

Query: 112 N 112
           +
Sbjct: 121 H 121


>IMGA|Medtr7g084420.2 Eukaryotic phosphomannomutase
           chr07_pseudomolecule_IMGAG_V3 18220114-18224105 F
           EGN_Mt090430 20090702
          Length = 245

 Score =  164 bits (416), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 95/121 (78%), Gaps = 11/121 (9%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFEKYDK  NIR KMVS+LREKF+HLNLTFSIGGQISFD    
Sbjct: 127 MLNVSPIGRNCSQEERDEFEKYDK--NIRSKMVSILREKFAHLNLTFSIGGQISFDVFPQ 184

Query: 58  A*DTSMSLMKSTSF------GDKTYKGGNDYEIYESDRTVGHTVTSPDDTVVQCKALFLA 111
             D +  L     F      GDKTYKGGND+EIYES+RT+GHTVTSP+DT+ QC +LFL 
Sbjct: 185 GWDKTYCLRYLDGFNEIHFFGDKTYKGGNDHEIYESERTIGHTVTSPEDTIKQCTSLFLG 244

Query: 112 N 112
           +
Sbjct: 245 H 245


>IMGA|Medtr7g084420.3 Eukaryotic phosphomannomutase
           chr07_pseudomolecule_IMGAG_V3 18220114-18223093 F
           EGN_Mt090430 20090702
          Length = 215

 Score =  114 bits (286), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 64/86 (74%), Gaps = 9/86 (10%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFEKYDKV NIR KMVS+LREKF+HLNLTFSIGGQISFD    
Sbjct: 127 MLNVSPIGRNCSQEERDEFEKYDKVQNIRSKMVSILREKFAHLNLTFSIGGQISFDVFPQ 186

Query: 58  A*DTSMSLMKSTS------FGDKTYK 77
             D +  L           FGDKTYK
Sbjct: 187 GWDKTYCLRYLDGFNEIHFFGDKTYK 212