Jatropha Genome Database

JcCA0122941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122941.10 - phase: 0 
         (251 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g135000.1 transducin family protein, putative chr04_p...   294   3e-80
IMGA|Medtr1g086290.1 WD repeat-containing protein 5, putative ch...    48   4e-06

>IMGA|Medtr4g135000.1 transducin family protein, putative
           chr04_pseudomolecule_IMGAG_V3 32661631-32657267 E
           EGN_Mt090430 20090702
          Length = 303

 Score =  294 bits (752), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/242 (59%), Positives = 182/242 (75%), Gaps = 10/242 (4%)

Query: 12  IHQHCLYKTLRG--GHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIVDFGL 69
           + QHCLYKTLR   GHTSICS+V+F+PWR WEVI+GGLDS LV+W+FS+ RP K+++FG 
Sbjct: 15  MKQHCLYKTLRAETGHTSICSTVEFLPWRSWEVISGGLDSTLVLWEFSKARPYKVLNFG- 73

Query: 70  PDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAAIRSKS 129
            ++ +S   QCFNP+ +HAIAVP+ DM+D  G IC    GD V+NVIDIESE+AA+RSKS
Sbjct: 74  -NVSNSGAGQCFNPSLIHAIAVPEIDMVDKLGKICAVAGGD-VINVIDIESEIAAVRSKS 131

Query: 130 TSKARKGSQSISKEYIATAGTDG-----SRLHLDYSLGGHVAAVSCVAFSLFRERGKFII 184
           +S  RKGSQS  K   ++  TD       RL  DY++GGH +AVS +AFS+F ERGKF+I
Sbjct: 132 SSNTRKGSQSRLKGGSSSNNTDADDNVKKRLQFDYTIGGHTSAVSSLAFSMFGERGKFLI 191

Query: 185 SGGNDKSVKVWDCFRYLGTGQSGCNNDILRLNIDLSKKVNWLCTTPTESENLVVCDTTKV 244
           SGGNDK VKVW+  RY   G S  NNDIL LNI + +KVNWLCTT  +++NLVVCDT+K 
Sbjct: 192 SGGNDKLVKVWNWSRYTDAGSSDGNNDILHLNIGVPQKVNWLCTTSADTDNLVVCDTSKT 251

Query: 245 VK 246
           VK
Sbjct: 252 VK 253


>IMGA|Medtr1g086290.1 WD repeat-containing protein 5, putative
           chr01_pseudomolecule_IMGAG_V3 17031904-17030156 E
           EGN_Mt090430 20090702
          Length = 316

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 33/188 (17%)

Query: 19  KTLRG-GHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIVDFGLPDMKSSNT 77
           KTLRG GH   C  V F P   + +++G  D  + +W+   G+ + ++            
Sbjct: 105 KTLRGHGHNVFC--VNFNPQSNY-IVSGSFDETVRVWEVKTGKSVHVIK----------- 150

Query: 78  AQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESE--LAAIRSKSTSKARK 135
                    HA+ V   D  +  G + ++G  DG   + D  S   L  +          
Sbjct: 151 --------AHAMPVTSVD-FNRDGSLIVSGSHDGSCKIWDTNSGALLKTLIDDKVPAVSF 201

Query: 136 GSQSISKEYIATAGTDGSRLHLDYSLG-------GHVAAVSCVAFSLFRERGKFIISGGN 188
              S + ++I  A  + +    +Y+ G       GHV  V C+  +     G++I+SG  
Sbjct: 202 AKFSPNGKFILVATLNDTLKLWNYAAGRSLKMYSGHVNRVYCLTSTFSVTNGRYIVSGSE 261

Query: 189 DKSVKVWD 196
           D+ + +WD
Sbjct: 262 DRCLYLWD 269