Jatropha Genome Database

JcCA0122251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122251.10 - phase: 0 /partial
         (179 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g141680.1 Zinc finger, RING-type; Cellulose synthase ...   249   4e-67
IMGA|Medtr1g124990.1 Zinc finger, RING-type; Cellulose synthase ...   197   2e-51
IMGA|Medtr8g145000.1 Zinc finger, RING-type; Cellulose synthase ...   155   1e-38
IMGA|Medtr3g009020.1 Cellulose synthase chr03_pseudomolecule_IMG...   150   4e-37
IMGA|Medtr3g136720.1 Zinc finger, RING-type; Cellulose synthase ...   137   3e-33
IMGA|Medtr8g073590.1 Zinc finger, RING-type; Cellulose synthase ...   134   2e-32
IMGA|Medtr3g029130.1 Zinc finger, RING-type; Cellulose synthase ...   120   4e-28
IMGA|Medtr4g089800.1 Cellulose synthase chr04_pseudomolecule_IMG...   109   6e-25
IMGA|Medtr4g089980.1 Cellulose synthase A catalytic subunit 4, p...   100   4e-22
IMGA|Medtr4g134990.1 Cellulose synthase chr04_pseudomolecule_IMG...    69   9e-13

>IMGA|Medtr4g141680.1 Zinc finger, RING-type; Cellulose synthase
           chr04_pseudomolecule_IMGAG_V3 35036331-35029774 E
           EGN_Mt090430 20090702
          Length = 1098

 Score =  249 bits (637), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 135/179 (75%), Gaps = 3/179 (1%)

Query: 1   MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
           M+TGGRL+AGSHNRNEFVLINA+E+GRIKSV+ELSGQ+C ICGDEIE+TVDGEPFVACNE
Sbjct: 1   MHTGGRLIAGSHNRNEFVLINAEENGRIKSVRELSGQICMICGDEIEVTVDGEPFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
           CAFPVCRPCYEYER+EGNQACPQCKTRYKR+KGSPRV                 Y + D 
Sbjct: 61  CAFPVCRPCYEYERKEGNQACPQCKTRYKRLKGSPRVEGDEEEDGDDDLDNEFDY-DLDD 119

Query: 121 MGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDAEISSDR 179
           MG +  ++++ S RLNTGR S +N +G              +IPLLTYGEED EISSDR
Sbjct: 120 MGQQAHSDSLFSGRLNTGRGSNTNISG--ANSEHGSPPLNPEIPLLTYGEEDPEISSDR 176


>IMGA|Medtr1g124990.1 Zinc finger, RING-type; Cellulose synthase
           chr01_pseudomolecule_IMGAG_V3 27423658-27418351 E
           EGN_Mt090430 20090702
          Length = 1135

 Score =  197 bits (501), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 108/222 (48%), Positives = 121/222 (54%), Gaps = 43/222 (19%)

Query: 1   MNTGGRLVAGSHNRNEFVLINADESGRI--KSVQELSGQVCQICGDEIEITVDGEPFVAC 58
           M+T GRLVAGSHNRNEFVLINAD++ R+   +V ELSGQ+CQICGDEIE TVD EPFVAC
Sbjct: 1   MDTNGRLVAGSHNRNEFVLINADDTARVSVNAVTELSGQICQICGDEIEFTVDDEPFVAC 60

Query: 59  NECAFPVCRPCYEYERREGNQACPQCKTRYKRIKG------------------------- 93
           NECAFPVCRPCYEYERREGNQACP CKT+YKRIKG                         
Sbjct: 61  NECAFPVCRPCYEYERREGNQACPHCKTKYKRIKGKPSTDFFFLYFVIYKWKKKFWLTKQ 120

Query: 94  -------------SPRVXXXXXXXXXXXXXXXXXYGNFDGMGPEQVAEAMLSARLNT-GR 139
                        SPRV                  G+     P  + EAM  + LN  GR
Sbjct: 121 SQYLGMALCSWRRSPRVEGDEEEDGIDDLENEFDIGSNIKHDPHHITEAMFFSHLNNIGR 180

Query: 140 ASYSNAAGIPTXXXXXXXXXXXKIPLLTYGE--EDAEISSDR 179
           +S  NA+ I T            I LLTY    ED  ISSD+
Sbjct: 181 SSQMNASRITTPSEFDTASVAADISLLTYDHEVEDPGISSDK 222


>IMGA|Medtr8g145000.1 Zinc finger, RING-type; Cellulose synthase
          chr08_pseudomolecule_IMGAG_V3 35160848-35155901 E
          EGN_Mt090430 20090702
          Length = 1038

 Score =  155 bits (391), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/97 (69%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 1  MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
          M     LVAGSHNRNE V+I+  E    K ++ L GQVC+ICGD++ +TVDG+ FVACNE
Sbjct: 1  MEASAGLVAGSHNRNELVVIHGHEEH--KPLKNLDGQVCEICGDDVGLTVDGDLFVACNE 58

Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          C FPVCRPCYEYERREG Q CPQCKTRYKR+KGSPRV
Sbjct: 59 CGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRV 95


>IMGA|Medtr3g009020.1 Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 1240220-1233020 E
          EGN_Mt090430 20090702
          Length = 1048

 Score =  150 bits (378), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/97 (63%), Positives = 74/97 (76%)

Query: 1  MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
          M T   LVAGSHN+NEF++I  D       +QEL G  CQ+CG++I +  DG+PFVACNE
Sbjct: 1  METNFGLVAGSHNKNEFIIIRQDGDYARTDLQELDGDTCQLCGEDIGVNADGDPFVACNE 60

Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          CAFPVCR CYEYERREGNQ CPQCKT++KR+KG  RV
Sbjct: 61 CAFPVCRNCYEYERREGNQVCPQCKTKFKRLKGCARV 97


>IMGA|Medtr3g136720.1 Zinc finger, RING-type; Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 34568485-34575037 E
          EGN_Mt090430 20090702
          Length = 1087

 Score =  137 bits (345), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 75/98 (76%), Gaps = 3/98 (3%)

Query: 1  MNTGGRLVAGSHNRNEFVLINAD--ESGRIKSVQELSGQVCQICGDEIEITVDGEPFVAC 58
          M     +VAGSHNRNE V I  D  +SG  K ++ L+GQVC ICG+++  T  G+ FVAC
Sbjct: 1  MEASSGMVAGSHNRNELVRIRHDSADSGP-KPLKNLNGQVCHICGEDVGTTPTGDVFVAC 59

Query: 59 NECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPR 96
          NEC +PVCR CYEYER+EGN++CPQCKTRYKR++GSPR
Sbjct: 60 NECGYPVCRDCYEYERKEGNKSCPQCKTRYKRLRGSPR 97


>IMGA|Medtr8g073590.1 Zinc finger, RING-type; Cellulose synthase
          chr08_pseudomolecule_IMGAG_V3 14394817-14400736 E
          EGN_Mt090430 20090702
          Length = 981

 Score =  134 bits (338), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 1  MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
          M     L AGS N NE V+I   +    K+V+ L GQ C+ICGD +  TV+G+ FVAC E
Sbjct: 1  MEAKSGLFAGSLNSNELVVIQ--KQNEPKAVKNLDGQDCEICGDSVGRTVEGDLFVACEE 58

Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          C FPVCRPCYEYER+EG+Q CPQC TRYKRIKGSPRV
Sbjct: 59 CGFPVCRPCYEYERKEGSQNCPQCHTRYKRIKGSPRV 95


>IMGA|Medtr3g029130.1 Zinc finger, RING-type; Cellulose synthase
           chr03_pseudomolecule_IMGAG_V3 7596650-7605565 E
           EGN_Mt090430 20090702
          Length = 1078

 Score =  120 bits (301), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 8/151 (5%)

Query: 29  KSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
           K ++ L  +VCQICGD I   V+G+PF+AC  CAFPVCRPCYEYER++GNQ+CPQCKTRY
Sbjct: 11  KPMKTLGSKVCQICGDNIGSAVNGDPFIACGVCAFPVCRPCYEYERKDGNQSCPQCKTRY 70

Query: 89  KRIKGSPRVXXXXXXXXXXXXXXXX-XYGNFDGMGPEQVAEAMLSARLNTGRASYSNAAG 147
            + KGSP +                  Y +      +++AE MLS ++  GR    +A  
Sbjct: 71  NKHKGSPAILGDREEDGGADNDANDFKYNSETQTQKQKIAERMLSWQMAYGRGEEVDAP- 129

Query: 148 IPTXXXXXXXXXXXKIPLLTYGEEDA-EISS 177
                          IP LT G+E + E+S+
Sbjct: 130 -----HYDKEVSHNHIPRLTGGQETSGELSA 155


>IMGA|Medtr4g089800.1 Cellulose synthase
          chr04_pseudomolecule_IMGAG_V3 18805888-18800122 E
          EGN_Mt090430 20090702
          Length = 1039

 Score =  109 bits (273), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 51/63 (80%)

Query: 35 SGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGS 94
          S ++C++CGDEI    +GE FVAC+ CAFPVC+PCYEYER EGNQ CPQC +RYKR KG 
Sbjct: 28 SSKICRVCGDEIGYKENGELFVACHVCAFPVCKPCYEYERSEGNQCCPQCNSRYKRHKGC 87

Query: 95 PRV 97
          PRV
Sbjct: 88 PRV 90


>IMGA|Medtr4g089980.1 Cellulose synthase A catalytic subunit 4,
          putative chr04_pseudomolecule_IMGAG_V3
          18885025-18883512 E EGN_Mt090430 20090702
          Length = 244

 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 4/91 (4%)

Query: 7  LVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVC 66
          L+ GS   N     ++DE  +     + S ++C++CGDEI    +GE FVAC+ CAFPVC
Sbjct: 4  LITGS---NSHFSHDSDEH-KPPPANKSSSKICRVCGDEIGYKENGELFVACHVCAFPVC 59

Query: 67 RPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          +PCYEYER EGNQ CPQC +RYKR KG PRV
Sbjct: 60 KPCYEYERSEGNQCCPQCNSRYKRHKGCPRV 90


>IMGA|Medtr4g134990.1 Cellulose synthase
          chr04_pseudomolecule_IMGAG_V3 32654448-32648144 E
          EGN_Mt090430 20090702
          Length = 991

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 41/54 (75%)

Query: 36 GQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89
            +C ICG+++ ++ +GE FVAC+EC++P+C+ C+E+E  EG++ C +C T Y+
Sbjct: 6  ASLCNICGEQLVLSENGELFVACHECSYPICKACFEHEINEGHKVCLKCGTPYE 59