Jatropha Genome Database

JcCA0122021.20

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.20 + phase: 0 /partial
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g005000.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3 419...    53   5e-08
IMGA|Medtr5g025550.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3 102...    50   2e-07

>IMGA|Medtr5g005000.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3
           4191-3249 E EGN_Mt090430 20090702
          Length = 114

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 54  GILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQV 94
           GI+K   +SP ++D +G PE SRT A+K IW HIK++NLQ+
Sbjct: 65  GIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQL 105


>IMGA|Medtr5g025550.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3
          10220899-10218990 F EGN_Mt090430 20090702
          Length = 134

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 53 AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           GI KV  V+  L +F+G PE SRT+AVKK+W +IK  NLQ
Sbjct: 53 GGIQKVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQ 93