Jatropha Genome Database

JcCA0120961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0120961.10 - phase: 0 /TE/partial
         (607 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f...    75   9e-14
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy...    73   4e-13
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t...    72   8e-13
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t...    71   1e-12
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H...    68   1e-11
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy...    67   2e-11
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...    65   7e-11
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H...    65   7e-11
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H...    65   1e-10
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy...    65   1e-10
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    64   2e-10
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...    63   4e-10
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    62   7e-10
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H...    59   8e-09
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy...    59   9e-09
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H...    57   3e-08
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu...    49   7e-06

>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
           CU179634.6 87152-89450 H EGN_Mt090430 20090702
          Length = 688

 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%)

Query: 530 PSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYRIKXKPXGIINR 589
           P+ Y +A+ DP W +AM++EF AL   N  TL    +    V C+ VY++K K  G + R
Sbjct: 336 PNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVER 395

Query: 590 YKARLVAKGYHQXHGIDF 607
           YKARLV KGY Q HGID+
Sbjct: 396 YKARLVVKGYTQHHGIDY 413


>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
           EGN_Mt090430 20090702
          Length = 790

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 145 LAFQESSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVR 204
           ++ + + +   L+  D+WGP    S+ G KY L +       + +         ++    
Sbjct: 582 ISSRNAKTAFDLVHFDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKN 641

Query: 205 FQQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIV 264
           F  +V+  F+ KI   +++   EF  L  +    GI  + SC Y  + NG VE  H+HI+
Sbjct: 642 FVSMVERQFERKIKMIRSDNGPEF-MLREFYDKKGIIHQRSCVYTPQQNGRVERRHQHIL 700

Query: 265 KLEE-LFHHSFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELLF 309
            +   L   S  P  FW+YA + A+Y INR+P    N  + +E+L+
Sbjct: 701 NISRALMFQSKLPKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLY 746


>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold AC235009.1 5302-2150 H
           EGN_Mt090430 20090702
          Length = 1051

 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 144 RLAFQESSSH----LQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLT 199
           +L F  SSSH     QL+  D+WGP  I  + G KY L +       L +        + 
Sbjct: 552 KLPFPHSSSHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVP 611

Query: 200 FFFVRFQQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECE 259
                F  L++N F I     + +   EF  L  +    GI  + SC    + NG VE +
Sbjct: 612 IHIKNFIALIENQFHITPKIIRTDNGSEF-LLHDFYASKGILHQRSCVETPQQNGRVERK 670

Query: 260 HRHIVKL-EELFHHSFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELLFINS 312
           H+HI+ +   L + S  P  FW+YAF+ A++ INR+P       + ++LL+ +S
Sbjct: 671 HQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSS 724



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query: 520 FLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYRI 579
           F+++ +    P  Y++A     W QAM  E  AL  T    ++        + C+ +Y++
Sbjct: 902 FILSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKV 961

Query: 580 KXKPXGIINRYKARLVAKGYHQXHGIDF 607
           K    G I RYKARLVAKGY+Q  G+D+
Sbjct: 962 KHHADGTIERYKARLVAKGYNQVEGLDY 989


>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold AC235005.1 3152-790 H
           EGN_Mt090430 20090702
          Length = 772

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 144 RLAFQESSSH----LQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLT 199
           +L F  SSSH     QL+  D+WGP  I  + G KY L +       L +        + 
Sbjct: 552 KLPFPHSSSHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVP 611

Query: 200 FFFVRFQQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECE 259
                F  L++N F I     + +   EF  L  +    GI  + SC    + NG VE +
Sbjct: 612 IHIKNFIALIENQFHITPKIIRTDNGSEF-LLHDFYASKGILHQRSCVETPQQNGRVERK 670

Query: 260 HRHIVKL-EELFHHSFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELLFINS 312
           H+HI+ +   L + S  P  FW+YAF+ A++ INR+P       + ++LL+ +S
Sbjct: 671 HQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSS 724


>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
           EGN_Mt090430 20090702
          Length = 772

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 5/164 (3%)

Query: 146 AFQESSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVRF 205
           A+  +SS  +L+  D+WGP  + S+ G KY L +   F   L +        ++     F
Sbjct: 569 AYSIASSKFELLHFDIWGPLSVTSVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNF 628

Query: 206 QQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVK 265
             L+   + I     +++   EF  +  +    GI  + SC    + NG VE +H+HI+ 
Sbjct: 629 VVLIHTHYQITPKYIRSDNGPEF-LIPEFYASKGIIHQKSCVETPQQNGRVERKHQHILN 687

Query: 266 LEE-LFHHSFFPHKFWTYAFIIAIYTINRLP---FSTTNPYTLF 305
           +   L   S  P+ FW+YA I A++ IN++P   F   +PY L 
Sbjct: 688 VARALLFQSKLPNFFWSYAVIHAVFLINKVPTPLFKQKSPYQLL 731


>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
           EGN_Mt090430 20090702
          Length = 847

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 2/154 (1%)

Query: 143 YRLAFQESSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFF 202
           + ++   ++S+ +L+  D+WGP  I SI G KY L +       L +       G++   
Sbjct: 511 FSISTSHATSNFELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHV 570

Query: 203 VRFQQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRH 262
             F ++V+  F +     +++   EF  L+ Y    GI  + SC    + NG VE +H H
Sbjct: 571 KSFIKMVQTQFHVTPKCIRSDNGPEFLILSFY-ESLGILHQKSCVETPQQNGRVERKHHH 629

Query: 263 IVKL-EELFHHSFFPHKFWTYAFIIAIYTINRLP 295
           I+ +   L + S  P  +W+YA + A++ INR P
Sbjct: 630 ILNVGRALLYQSKLPASYWSYALLHAVFLINRKP 663


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
           EGN_Mt090430 20090702
          Length = 1396

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 2/165 (1%)

Query: 146 AFQESSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVRF 205
           +   +S++ +L+  D+WGP  I S+ G +Y L +       L +        ++     F
Sbjct: 541 SLSHASTNFELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNF 600

Query: 206 QQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVK 265
             +++  F +     +++   EF  L  +   +GI  + SC    + NG VE +H+HI+ 
Sbjct: 601 ILMIRTQFHVTPKYVRSDNGPEF-LLNDFYSSHGIIHQKSCVETPQQNGRVERKHQHILN 659

Query: 266 L-EELFHHSFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELLF 309
           +   L + S  P  FW+YA + A++ INR+P    +  + + +LF
Sbjct: 660 VGRALLYQSKLPPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLF 704



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 519 AFLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYR 578
           +++++ +    P  Y++A     W +AM  E  AL  T     V        + C+ V++
Sbjct: 856 SYVLSLHTHNEPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFK 915

Query: 579 IKXKPXGIINRYKARLVAKGYHQXHGIDF 607
           IK    G I RYKARLVAKGY Q  G+D+
Sbjct: 916 IKRHADGSIERYKARLVAKGYTQVEGLDY 944


>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
           EGN_Mt090430 20090702
          Length = 883

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 143 YRLAFQESSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFF 202
           ++L+  ++S   +LI  D+WGP    SI G KY +     +     +        ++   
Sbjct: 508 FKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSV 567

Query: 203 VRFQQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRH 262
             F   ++N F+ K+ + + +   EF  +  +    GI  + SC    + NG VE +H+H
Sbjct: 568 QNFILNIENQFNCKVKTVRTDNGPEF-LMPDFYSSKGIEHQTSCVETPQQNGRVERKHQH 626

Query: 263 IVKLEE-LFHHSFFPHKFWTYAFIIAIYTINRLP---FSTTNPYTL 304
           I+ +   L   S  P  FW+Y+ + AIY INR+P       +PY L
Sbjct: 627 ILNVARALLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYFL 672


>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
           EGN_Mt090430 20090702
          Length = 479

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 154 LQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVRFQQLVKNSF 213
            QL+  D+WGP  I SI G KY L +       L +        +      F  +++N F
Sbjct: 40  FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQF 99

Query: 214 DIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVKL-EELFHH 272
            +     + +   EF  L  +    GI  + SC    + NG VE +H+HI+ +   L + 
Sbjct: 100 HVTPKIIRTDNGSEF-LLHEFYASKGILHQSSCVETPQQNGRVERKHQHILNIGRALLYQ 158

Query: 273 SFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELLF 309
           S  P  FW+YAF+ A++ INR+     + ++ + LL+
Sbjct: 159 SKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLY 195



 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%)

Query: 520 FLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYRI 579
           F+++ +    P  Y++A     W QAM  E  AL  T    ++        + C+ +Y+I
Sbjct: 375 FILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKI 434

Query: 580 KXKPXGIINRYKARLVAKGYHQ 601
           K    G I RYKARLVAKGY+Q
Sbjct: 435 KHHADGTIERYKARLVAKGYNQ 456


>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
           EGN_Mt090430 20090702
          Length = 920

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 143 YRLAFQESSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFF 202
           ++L+  ++S   +LI  D+WGP    SI G KY +     +     +        ++   
Sbjct: 578 FKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSV 637

Query: 203 VRFQQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRH 262
             F   ++N F+ K+ + + +   EF  +  +    GI  + SC    + NG VE +H+H
Sbjct: 638 QNFILNIENQFNCKVKTVRTDNGPEF-LMPDFYSSKGIEHQTSCVETPQQNGRVERKHQH 696

Query: 263 IVKLEE-LFHHSFFPHKFWTYAFIIAIYTINRLP---FSTTNPYTL 304
           I+ +   L   S  P  FW+Y+ + AIY INR+P       +PY L
Sbjct: 697 ILNVARALLFQSKLPKIFWSYSVLHAIYIINRIPTPLLQNKSPYFL 742


>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
           EGN_Mt090430 20090702
          Length = 1414

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%)

Query: 520 FLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYRI 579
           F+++ +  P P  Y++A+    W  AM  E  AL  T    LV        + C+ +Y++
Sbjct: 883 FVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKV 942

Query: 580 KXKPXGIINRYKARLVAKGYHQXHGIDF 607
           K    G + RYKARLVAKGY+Q  G+D+
Sbjct: 943 KFHADGTVERYKARLVAKGYNQIEGLDY 970



 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 205 FQQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIV 264
           F  ++KN F       + +   EF  L+T    +GI  + SC    + NG VE +H+HI+
Sbjct: 606 FITMIKNHFHTTPKFIRTDNGPEF-MLSTLYSSHGIIHQKSCVETPQQNGRVERKHQHIL 664

Query: 265 KL-EELFHHSFFPHKFWTYAFIIAIYTINRLPFSTTN 300
            +   L + S  P  +W YA   A++ INR+P  T N
Sbjct: 665 NVGRALLYQSKLPPAYWCYAIQHAVFLINRVPTPTLN 701


>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
           EGN_Mt090430 20090702
          Length = 1413

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 50/89 (56%)

Query: 519 AFLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYR 578
           AF ++ +    P+ Y++A+    W QAM  E +AL  T    LV        + C+ +Y+
Sbjct: 873 AFALSLDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYK 932

Query: 579 IKXKPXGIINRYKARLVAKGYHQXHGIDF 607
           IK    G I RYKARLVAKGY+Q  G+D+
Sbjct: 933 IKHHADGSIERYKARLVAKGYNQIEGLDY 961



 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 150 SSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVRFQQLV 209
           +SS  +L+  D+WGP  + SI   +Y L +   + I   +        ++     F  L+
Sbjct: 534 ASSKFELLHFDIWGPLAVTSIHNHRYFLTILDDYSIFFWIVLLKSKYEVSQHVKNFINLI 593

Query: 210 KNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVKL-EE 268
              + I     +++   EF  L ++    GI    SC    + NG VE +H+HI+ +   
Sbjct: 594 HTQYHITPKVVRSDNGPEF-LLNSFYASKGIVHHKSCVETPQQNGRVERKHQHILNVGRA 652

Query: 269 LFHHSFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELL 308
           L   S  P  +W+YA + AI+ INR+   T +  + ++LL
Sbjct: 653 LLFQSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLL 692


>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
           EGN_Mt090430 20090702
          Length = 1275

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%)

Query: 519 AFLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYR 578
           +F+ +    P P+ Y +A+    W++AM  E  AL  T    +V        + C+ +Y+
Sbjct: 728 SFISSLQTTPEPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYK 787

Query: 579 IKXKPXGIINRYKARLVAKGYHQXHGIDF 607
           +K    G I RYKARLVAKGY Q  G+D+
Sbjct: 788 VKHNADGSIERYKARLVAKGYTQIEGLDY 816


>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
           EGN_Mt090430 20090702
          Length = 710

 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%)

Query: 520 FLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLVPQTEAYNVVECKGVYRI 579
           F+++ +    P  Y++A     W QAM  E  AL  T    ++        + C+ +Y+I
Sbjct: 282 FILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKI 341

Query: 580 KXKPXGIINRYKARLVAKGYHQXHGIDF 607
           K      I RYKARLVAKGY+Q  G+D+
Sbjct: 342 KHNADDTIERYKARLVAKGYNQVEGLDY 369



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 208 LVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVKL- 266
           +++N F +     + +   EF  L  +    GI  + SC    + NG VE +H+HI+ + 
Sbjct: 1   MIENQFHVTPKIIRTDNGSEF-LLHEFYASKGILHQRSCVETPQQNGRVERKHQHILNIG 59

Query: 267 EELFHHSFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELLF 309
             L + S  P  FW+YAF+ A++ INR+P    + ++ + LL+
Sbjct: 60  RALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLY 102


>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
           EGN_Mt090430 20090702
          Length = 945

 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 154 LQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVRFQQLVKNSF 213
            +L+  D+WGP  I SI   +Y L +   +   + +        ++     F  L++  +
Sbjct: 546 FELLHFDIWGPLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQY 605

Query: 214 DIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVKL-EELFHH 272
           +I   + +++   EF  L ++    GI    SC    + NG VE +H+HI+ +   L + 
Sbjct: 606 NITPKTVRSDNGPEF-LLHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQ 664

Query: 273 SFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELL 308
           S  P  +W+YA + A + INR+   T +  + ++LL
Sbjct: 665 SKLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLL 700


>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
           EGN_Mt090430 20090702
          Length = 680

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 146 AFQESSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVRF 205
           A   SS ++  I + +WGP  + S+ G +Y L +       L +        ++     F
Sbjct: 506 ALSPSSCNVVSISNYIWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNF 565

Query: 206 QQLVKNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVK 265
             +++N F       + +   EF  L ++   +GI  + SC    + NG VE +H+HI+ 
Sbjct: 566 ITMIQNHFHTTPKFIRTDNGPEF-MLPSFYASHGIIHQKSCVETPQQNGRVERKHQHILN 624

Query: 266 L-EELFHHSFFPHKFWTYAFIIAIYTINRLP 295
           +   L + S  P  FW+YA   A++ INR+P
Sbjct: 625 VGRALLYQSKLPPSFWSYAIHHAVFLINRVP 655


>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
           chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
           EGN_Mt090430 20090702
          Length = 293

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query: 546 MSEEFNALIXTNIQTLVPQTEAYNVVECKGVYRIKXKPXGIINRYKARLVAKGYHQXHGI 605
           M  E  AL  T    +V    A   + C+ +++IK    G I RYKARLVAKGY+Q  G+
Sbjct: 1   MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60

Query: 606 DF 607
           D+
Sbjct: 61  DY 62