Jatropha Genome Database

JcCA0118941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0118941.10 - phase: 0 /partial
         (87 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g008930.1 Chromo; MOZ/SAS-like protein chr03_pseudomo...   161   8e-41

>IMGA|Medtr3g008930.1 Chromo; MOZ/SAS-like protein
           chr03_pseudomolecule_IMGAG_V3 1195286-1188897 E
           EGN_Mt090430 20090702
          Length = 440

 Score =  161 bits (407), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 77/77 (100%)

Query: 1   RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV 60
           +KCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV
Sbjct: 218 KKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV 277

Query: 61  LCECDDRGCHMVGYFSK 77
           LCECD+RGCHMVGYFSK
Sbjct: 278 LCECDERGCHMVGYFSK 294