Jatropha Genome Database

JcCA0117501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117501.10 - phase: 0 
         (100 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g129790.1 TGS; GTP1/OBG chr02_pseudomolecule_IMGAG_V3...   172   3e-44

>IMGA|Medtr2g129790.1 TGS; GTP1/OBG chr02_pseudomolecule_IMGAG_V3
          31477168-31486032 E EGN_Mt090430 20090702
          Length = 394

 Score =  172 bits (437), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/86 (91%), Positives = 85/86 (98%)

Query: 1  MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60
          MPPK++KSKEAP ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK++IPAENFPFCTIE
Sbjct: 1  MPPKSAKSKEAPVERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKMAIPAENFPFCTIE 60

Query: 61 PNEARVNIPDERFEWLCQLYKPKSEV 86
          PNEARVN+PDERFEWLCQL+KPKSEV
Sbjct: 61 PNEARVNVPDERFEWLCQLFKPKSEV 86