Jatropha Genome Database

JcCA0117111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117111.10 - phase: 0 /pseudo
         (114 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g088410.1 AMP-dependent synthetase and ligase chr08_p...   103   2e-23
IMGA|Medtr8g088460.1 AMP-dependent synthetase and ligase family ...   100   3e-22
IMGA|Medtr5g008870.1 AMP-dependent synthetase and ligase chr05_p...    94   1e-20
IMGA|Medtr5g008840.1 AMP-dependent synthetase and ligase chr05_p...    87   3e-18
IMGA|Medtr5g023600.1 AMP-dependent synthetase and ligase chr05_p...    84   1e-17
IMGA|Medtr5g084090.1 AMP-dependent synthetase and ligase chr05_p...    72   7e-14
IMGA|Medtr3g086630.1 AMP-dependent synthetase and ligase chr03_p...    69   4e-13
IMGA|Medtr8g138110.1 AMP-dependent synthetase and ligase chr08_p...    67   3e-12
IMGA|Medtr5g084070.1 AMP-dependent synthetase and ligase chr05_p...    64   2e-11
IMGA|Medtr5g084060.1 AMP-dependent synthetase and ligase chr05_p...    64   2e-11

>IMGA|Medtr8g088410.1 AMP-dependent synthetase and ligase
           chr08_pseudomolecule_IMGAG_V3 18721448-18724601 E
           EGN_Mt090430 20090702
          Length = 607

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 58/70 (82%)

Query: 1   MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
           M+GL+HC  N VPLSPI+FLERAAK+  DR S++YGSL+Y+W +T+ RCL LAS LTQLG
Sbjct: 43  MQGLVHCHANSVPLSPINFLERAAKVCRDRTSLVYGSLKYNWGQTHQRCLKLASSLTQLG 102

Query: 61  ISNGDVVSSF 70
           IS GDVV++ 
Sbjct: 103 ISRGDVVATL 112


>IMGA|Medtr8g088460.1 AMP-dependent synthetase and ligase family
           protein, putative chr08_pseudomolecule_IMGAG_V3
           18742584-18744059 E EGN_Mt090430 20090702
          Length = 135

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 55/65 (84%)

Query: 1   MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
           MEGL+HC+ N VPLSPI+FLERAAK+  DR S++YGSL+Y+W +T+ RCL LAS L+QLG
Sbjct: 67  MEGLVHCNANSVPLSPINFLERAAKVCRDRTSLVYGSLKYNWGQTHQRCLKLASALSQLG 126

Query: 61  ISNGD 65
           IS GD
Sbjct: 127 ISRGD 131


>IMGA|Medtr5g008870.1 AMP-dependent synthetase and ligase
          chr05_pseudomolecule_IMGAG_V3 1774123-1771901 E
          EGN_Mt090430 20090702
          Length = 548

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 55/68 (80%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          MEG I C+ NYVPL+PISFLER+A +Y D+ S+IYG + Y+WS+T+ RC+ LAS ++QLG
Sbjct: 1  MEGSIKCNANYVPLTPISFLERSAIVYSDKVSIIYGDVTYTWSQTHQRCIKLASSISQLG 60

Query: 61 ISNGDVVS 68
          +S  DVV+
Sbjct: 61 VSPNDVVA 68


>IMGA|Medtr5g008840.1 AMP-dependent synthetase and ligase
          chr05_pseudomolecule_IMGAG_V3 1756760-1753660 E
          EGN_Mt090430 20090702
          Length = 551

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 53/68 (77%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          MEG I C+ NYVPL+PISFLER+A +Y ++ S+IY  + Y+WS+T+ RC+ LAS ++QLG
Sbjct: 1  MEGTIQCNANYVPLTPISFLERSAIVYSNKVSIIYNDVTYTWSQTHQRCIKLASSISQLG 60

Query: 61 ISNGDVVS 68
          +S   VV+
Sbjct: 61 VSPHHVVA 68


>IMGA|Medtr5g023600.1 AMP-dependent synthetase and ligase
          chr05_pseudomolecule_IMGAG_V3 9286141-9291825 F
          EGN_Mt090430 20090702
          Length = 550

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 2/71 (2%)

Query: 2  EGLIHCSV-NYVPLSPISFLERAAKIYGDRKSVIYGS-LEYSWSETYNRCLGLASVLTQL 59
          + L+ CS  +++PL+PI FLERAA +YGD+ S+IY   + +SW ETY RCL LAS L  L
Sbjct: 3  QDLVECSKGSHIPLTPICFLERAATVYGDKVSIIYNDHVRFSWRETYERCLKLASALVNL 62

Query: 60 GISNGDVVSSF 70
          GISNGD+V++ 
Sbjct: 63 GISNGDIVATL 73


>IMGA|Medtr5g084090.1 AMP-dependent synthetase and ligase
          chr05_pseudomolecule_IMGAG_V3 31970543-31968609 E
          EGN_Mt090430 20090702
          Length = 562

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M+ L     N  PL+P++FLER + IY +  S+IY    ++WS+T+ RCL LAS +T LG
Sbjct: 1  MDQLKPTQANNSPLTPLTFLERTSTIYPNTPSIIYNDTVFTWSQTHKRCLQLASAITSLG 60

Query: 61 ISNGDVVS 68
          I  G+VVS
Sbjct: 61 IRRGNVVS 68


>IMGA|Medtr3g086630.1 AMP-dependent synthetase and ligase
          chr03_pseudomolecule_IMGAG_V3 20332305-20329842 E
          EGN_Mt090430 20090702
          Length = 582

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M+ L  C  NY  L+P++FL RA+  Y +R SVI+    ++WS+TY+RC  LAS L  L 
Sbjct: 1  MDNLPKCRANYTILTPLTFLMRASASYANRTSVIHEGTRFTWSQTYDRCRRLASSLRALN 60

Query: 61 ISNGDVVS 68
          I+  DVVS
Sbjct: 61 IAKNDVVS 68


>IMGA|Medtr8g138110.1 AMP-dependent synthetase and ligase
          chr08_pseudomolecule_IMGAG_V3 33219062-33221998 F
          EGN_Mt090430 20090702
          Length = 566

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 8  SVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLGISNGDVV 67
          + NY  L+P+ FLERAA+++  RKS+I+GS  Y+W +TY RC   AS L+   I+ G+ V
Sbjct: 14 AANYTSLTPLWFLERAAQVHPTRKSIIHGSRHYTWRQTYQRCRRFASALSNRSIALGNTV 73

Query: 68 S 68
          +
Sbjct: 74 A 74


>IMGA|Medtr5g084070.1 AMP-dependent synthetase and ligase
          chr05_pseudomolecule_IMGAG_V3 31961125-31962816 E
          EGN_Mt090430 20090702
          Length = 563

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M+ L     N   L+P++FLERAA +YG+  S+IY +  ++WS+T+ RCL LAS L+ LG
Sbjct: 1  MDQLTRNQANSTALTPLTFLERAATVYGNSISIIYNNTSFTWSQTHKRCLQLASSLSSLG 60

Query: 61 ISNGDVVS 68
          I  GDVVS
Sbjct: 61 IQKGDVVS 68


>IMGA|Medtr5g084060.1 AMP-dependent synthetase and ligase
          chr05_pseudomolecule_IMGAG_V3 31954810-31953119 E
          EGN_Mt090430 20090702
          Length = 563

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M  L     N   L+P++FLERAA +YG+  S+IY +  ++WS+T+ RCL LAS L+ LG
Sbjct: 1  MNQLTRNQANSTALTPLTFLERAATVYGNSISIIYNNTSFTWSQTHKRCLQLASSLSSLG 60

Query: 61 ISNGDVVS 68
          I  GDVVS
Sbjct: 61 IQKGDVVS 68