Jatropha Genome Database

JcCA0116381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116381.10 - phase: 1 /partial
         (196 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g137170.1 Acetolactate synthase, small subunit chr04_...   300   2e-82
IMGA|Medtr4g081740.1 Leucine-rich repeat, cysteine-containing su...    56   9e-09

>IMGA|Medtr4g137170.1 Acetolactate synthase, small subunit
           chr04_pseudomolecule_IMGAG_V3 33711444-33718733 E
           EGN_Mt090430 20090702
          Length = 441

 Score =  300 bits (769), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 163/190 (85%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKMVAVQRN  KFGI+EIARTGKIALRREKMG  APFWR+SAASYPDL      +
Sbjct: 195 VTGDPGKMVAVQRNFGKFGIKEIARTGKIALRREKMGASAPFWRYSAASYPDLEGKTAIN 254

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
           A +G+K      + DT VGGDVYP+EPSD F V QVLDA WG LN++DT+G+RSHTLSML
Sbjct: 255 ALVGAKNVNPVDKTDTPVGGDVYPIEPSDSFTVNQVLDAQWGFLNDEDTSGIRSHTLSML 314

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           VNDAPGVLNIVTGVFARRGYNIQSLAVGHSE EGISR+TTVVPGTDESISKLVQQLYKLV
Sbjct: 315 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSEVEGISRLTTVVPGTDESISKLVQQLYKLV 374

Query: 181 ELHEVRNFSN 190
           EL EVR+ ++
Sbjct: 375 ELREVRDITH 384



 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 112 LRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISK 171
           +R HT+S+ V D  G++N + GVFARRGYNI+SLAVG ++   +   T VV GTD  + +
Sbjct: 73  VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNQDRAL--FTIVVSGTDRVLRQ 130

Query: 172 LVQQLYKLVELHEVRNFSNQ 191
           +V+QL KLV + +V + S +
Sbjct: 131 VVEQLQKLVNVLKVEDLSRE 150


>IMGA|Medtr4g081740.1 Leucine-rich repeat, cysteine-containing
           subtype chr04_pseudomolecule_IMGAG_V3 17180419-17177577
           E EGN_Mt090430 20090702
          Length = 570

 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 26/27 (96%)

Query: 3   GDPGKMVAVQRNLKKFGIREIARTGKI 29
           GDPGKMVAVQRNL KFGI+EIARTGKI
Sbjct: 540 GDPGKMVAVQRNLSKFGIKEIARTGKI 566