Jatropha Genome Database

JcCA0116061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116061.10 - phase: 0 /partial
         (180 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g129760.1 hypothetical protein chr01_pseudomolecule_I...   148   2e-36
IMGA|Medtr1g129750.1 ABR017Cp, putative chr01_pseudomolecule_IMG...    69   2e-12

>IMGA|Medtr1g129760.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 29031847-29031174 E
           EGN_Mt090430 20090702
          Length = 97

 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 82/103 (79%), Gaps = 7/103 (6%)

Query: 14  MGERREDGIGGKNSSSKTKWPLIKPKKNLQITRIKDTDLFTVQNFFTPAESKAFIKAAES 73
           MGER+E       +++  KWP IKPK NL ITR++D DLFTVQNFF+P ESKAFI+ AE 
Sbjct: 1   MGERKE-------TTTDPKWPSIKPKNNLHITRLRDFDLFTVQNFFSPYESKAFIETAEG 53

Query: 74  IGFVHQGSLGPTRGEAYRDNDRVSSNDSALANAVWESGLNKLF 116
           IGF HQGSLGP +GEAYRDNDR+S ND  LA+++W+SGLNKLF
Sbjct: 54  IGFTHQGSLGPAKGEAYRDNDRISVNDPVLADSIWDSGLNKLF 96


>IMGA|Medtr1g129750.1 ABR017Cp, putative
           chr01_pseudomolecule_IMGAG_V3 29031168-29029875 E
           EGN_Mt090430 20090702
          Length = 118

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 32/34 (94%)

Query: 137 RYKVGQRFGRHIDESVDLGDGKRTHYTLLIYLSG 170
           RYKVGQRFGRHIDES DLGDGKRT YTLL+YLSG
Sbjct: 4   RYKVGQRFGRHIDESNDLGDGKRTRYTLLVYLSG 37