Jatropha Genome Database
- JcCA0115371.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0115371.10 + phase: 1 /TE
(279 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse transc... 64 7e-11
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 50 1e-06
IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse transc... 49 2e-06
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 48 5e-06
>IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
34193929-34195112 H EGN_Mt090430 20090702
Length = 373
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 69/207 (33%)
Query: 89 DLRPISLSNVIEQVTSKILTSHM--------LHSMSNVILGRFIIKNAMIAFELMHFLKR 140
D RPI+L +V +V SK+L + + L + S + GR I+ NAM+A E++H++K
Sbjct: 118 DWRPIALCDVFYKVVSKVLANRLKKILHKCILDNQSAFVPGRPILDNAMVAIEVVHYMKS 177
Query: 141 KTQGNNRFSAIKTVSPKLIIE*SDRFWKLHY*S*VLPMVIEVGFCL*SGGVTIFESYVIE 200
KT+G A+K ++ S + ++ + Y+ E
Sbjct: 178 KTKGKKGNVALK-------LDISKAYDRIDW------------------------LYLKE 206
Query: 201 VGCCL*SDGVAVFESYVIKVGFCHRSYH--------QDYGNGNHCYLLCFSCQ*IV*SIY 252
V +IK+GFCHR + DY + + + + I
Sbjct: 207 V---------------MIKMGFCHRWVNWIMMCIETVDYS-------VLVNQKLVGPPII 244
Query: 253 SWQGLRQGDPMSSYLFLVMAEGLSALL 279
+GL+QGDP+S YLF++ EGLSAL+
Sbjct: 245 PGRGLQQGDPLSPYLFILCVEGLSALI 271
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 89 DLRPISLSNVIEQVTSKILTSHMLH--------SMSNVILGRFIIKNAMIAFELMHFLKR 140
DLRPISL NV+ ++ SK+L + + S + GR I+ NA+I E++H +KR
Sbjct: 86 DLRPISLCNVLYKMVSKLLANRLKRCLDKCVSEEQSAFVEGRSILDNALITTEIIHSMKR 145
Query: 141 KTQG 144
KT+G
Sbjct: 146 KTKG 149
>IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
40247310-40247920 H EGN_Mt090430 20090702
Length = 187
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 89 DLRPISLSNVIEQVTSKILTSHM--------LHSMSNVILGRFIIKNAMIAFELMHFLKR 140
DLRPISL NV+ ++ K+LT+ + L S R I+ NA+IA E++H +KR
Sbjct: 3 DLRPISLCNVLYKMVLKLLTNRLKRCLDKCVLEEQSTFFKSRSILDNALIATEIIHSMKR 62
Query: 141 KTQG 144
KT+G
Sbjct: 63 KTKG 66
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 48.1 bits (113), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 89 DLRPISLSNVIEQVTSKILTSHMLHSM--------SNVILGRFIIKNAMIAFELMHFLKR 140
DLRPISL NV+ ++ +K L + + + S + GR I N +IA E++H+LK
Sbjct: 324 DLRPISLCNVVYKILAKTLANRLQRVLDKCISVEQSGFVAGRTITDNILIALEIIHYLKC 383
Query: 141 KTQGNNRFSAIK 152
KT G +A+K
Sbjct: 384 KTWGIKGEAALK 395