Jatropha Genome Database

JcCA0101681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0101681.10 + phase: 1 /pseudo/partial
         (262 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101010.1 UBA/THIF-type NAD/FAD binding fold; Rhodane...   382   e-107

>IMGA|Medtr5g101010.1 UBA/THIF-type NAD/FAD binding fold;
           Rhodanese-like chr05_pseudomolecule_IMGAG_V3
           40405967-40401475 E EGN_Mt090430 20090702
          Length = 465

 Score =  382 bits (981), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 174/233 (74%), Positives = 208/233 (89%)

Query: 22  IVEHQEALRTYNALEIFSQYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 81
           +VEH+EALRT NALEIFS+YDIIVDATDNAP+RY+ISDCCVVLGKPLVSGAA+GLEGQLT
Sbjct: 162 VVEHEEALRTSNALEIFSKYDIIVDATDNAPTRYLISDCCVVLGKPLVSGAAVGLEGQLT 221

Query: 82  VYNYKGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASDIGEPLSG 141
           +YN+ GGPCYRCLFPTPPP +ACQ CAD+GVLGVVPGIIGCLQALEAIKIA+ +GEPLSG
Sbjct: 222 IYNHNGGPCYRCLFPTPPPRSACQSCADNGVLGVVPGIIGCLQALEAIKIAAAVGEPLSG 281

Query: 142 RMLLLDALSARIRIVKIRSRSLNCEVCGETAAFNQKQFRDFDYEKFTQSPLSTAPPKLNL 201
           RMLL DALS+RIR+VKIR RS++CE CG+ A FN++ FR+FDYEKFTQ+PL   P KLNL
Sbjct: 282 RMLLFDALSSRIRVVKIRGRSMHCEACGDNARFNKQYFREFDYEKFTQTPLRVPPLKLNL 341

Query: 202 LSAGSRITSKDFNEKIVKGEGHVLLDVRPAHHFKIVALPNALNIPLASLEAKV 254
           L + SRI+S ++ E  +  E HVL+DVRPAHHFKIV+LPN+LNIP ++LE+++
Sbjct: 342 LPSESRISSMEYKEITLNKEPHVLVDVRPAHHFKIVSLPNSLNIPFSTLESRL 394