Jatropha Genome Database

JcCA0098341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0098341.10 + phase: 1 /pseudo/partial
         (121 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g129290.1 UbiA prenyltransferase chr08_pseudomolecule...   154   1e-38

>IMGA|Medtr8g129290.1 UbiA prenyltransferase
           chr08_pseudomolecule_IMGAG_V3 30490535-30497793 E
           EGN_Mt090430 20090702
          Length = 411

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 86/93 (92%)

Query: 23  KDIPDIEGDKIFGIQSFTVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCVTVVG 82
           KDIPDIEGDKIFGIQSF+VRLGQ+RVFWIC++LLE+AYGV+++VGA SS  WSK VT +G
Sbjct: 307 KDIPDIEGDKIFGIQSFSVRLGQKRVFWICVTLLELAYGVSLVVGATSSCLWSKIVTSLG 366

Query: 83  HAILAAILWNRAKSVDLKSKAAITSCYMFIWKV 115
           HA+LA+IL+N AKSVDLKSKA+ITS YMFIWK+
Sbjct: 367 HAVLASILFNHAKSVDLKSKASITSFYMFIWKL 399