Jatropha Genome Database

JcCA0091211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0091211.10 - phase: 0 /pseudo/partial
         (243 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   280   4e-76
IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   280   5e-76
IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    93   1e-19
IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    80   9e-16
IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    75   2e-14
IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    62   3e-10

>IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32903343-32908349 E
           EGN_Mt090430 20090702
          Length = 883

 Score =  280 bits (716), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 144/157 (91%), Gaps = 7/157 (4%)

Query: 80  RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 139
           RN+QKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTG+YTNNFDLSLNTKN
Sbjct: 349 RNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKN 408

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHED 199
           GFPVF+TV+EAN+VTKKQDLFSAYKLTQEDKEEIE L KDPRIGERIIKSIAPSIYGH+D
Sbjct: 409 GFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIENLGKDPRIGERIIKSIAPSIYGHDD 468

Query: 200 IKTAIALAMFGGQEKNVRRXDTGSE---GTVNVLLMG 233
           IKTAIALAMFGGQEKNV     G     G +NVLL+G
Sbjct: 469 IKTAIALAMFGGQEKNVE----GKHRLRGDINVLLLG 501


>IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32897406-32892230 E
           EGN_Mt090430 20090702
          Length = 929

 Score =  280 bits (716), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 144/157 (91%), Gaps = 7/157 (4%)

Query: 80  RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 139
           RN+QKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTG+YTNNFDLSLNTKN
Sbjct: 395 RNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKN 454

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHED 199
           GFPVF+TV+EAN+VTKKQDLFSAYKLTQEDKEEIE L KDPRIGERIIKSIAPSIYGH+D
Sbjct: 455 GFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIENLGKDPRIGERIIKSIAPSIYGHDD 514

Query: 200 IKTAIALAMFGGQEKNVRRXDTGSE---GTVNVLLMG 233
           IKTAIALAMFGGQEKNV     G     G +NVLL+G
Sbjct: 515 IKTAIALAMFGGQEKNVE----GKHRLRGDINVLLLG 547


>IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 41900221-41894142 E
           EGN_Mt090430 20090702
          Length = 773

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 3/154 (1%)

Query: 80  RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 139
           +++Q L++QE P     G+LPR  ++I  +DL+D  +PG+ + + GIY      S  + N
Sbjct: 189 KDHQTLSMQEVPENSAPGQLPRTVDIIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVN 248

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHED 199
           G  VF TV+ AN+V+      +A   + ED + I+K+A+     + +  S+APSI+GH  
Sbjct: 249 G--VFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIHGHSW 306

Query: 200 IKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
           IK A+ L M GG EKN++   T   G +N++++G
Sbjct: 307 IKKAVILLMLGGVEKNLKN-GTHLRGDINMMMVG 339


>IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr07_pseudomolecule_IMGAG_V3 30928106-30922243 E
           EGN_Mt090430 20090702
          Length = 720

 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 82  YQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGF 141
           +Q+  +QE    VP G +PR   V L  +L     PG+ +E++GI+     +        
Sbjct: 228 FQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVSPGDVVELSGIFLPIPYVGFRAMRAG 287

Query: 142 PVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIK 201
            V  T +EA  VT  +  +  Y+L  +++E+I++LA+D  I +++ +S+AP I+GHEDIK
Sbjct: 288 LVADTYLEAMSVTHFKKKYEEYELIGDEEEQIKRLAEDGDIYDKLARSLAPEIFGHEDIK 347

Query: 202 TAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
            A+ L + G   + ++       G +++ LMG
Sbjct: 348 KALLLLLVGAPHRTLKD-GMKIRGDLHICLMG 378


>IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E
           EGN_Mt090430 20090702
          Length = 840

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 31/183 (16%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIY-TNNFDLSLNTKN 139
           + Q + LQE+P  +P G  P    ++L + L+D  +PG+ +EVTGIY   +  +    + 
Sbjct: 311 DKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRT 370

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIE---------------------KLAK 178
              +F T I+  H+ K     S  ++  ED  E++                     +L+K
Sbjct: 371 VKSLFKTYIDCLHIKKT----SKSRMLVEDAMEVDNGQGRNPEEVLFDEEKVAKLKELSK 426

Query: 179 DPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVRRXDTGSE--GTVNVLLMGRSR 236
            P I ER+ KS+AP+I+  +D+K  +   +FGG   N  +  +G+   G +N+LL+G   
Sbjct: 427 QPDIYERLTKSLAPNIWELDDVKKGLLCQLFGG---NALKLASGASFRGDINILLVGDPG 483

Query: 237 HSK 239
            SK
Sbjct: 484 TSK 486


>IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr02_pseudomolecule_IMGAG_V3 1989579-2000046 H
           EGN_Mt090430 20090702
          Length = 581

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 8/158 (5%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNG 140
           +YQ++ +QES  ++  G +PR   VIL +DL+D  + G+++ VTG+ T  +   L  K+ 
Sbjct: 119 DYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPEL--KDV 176

Query: 141 FPVFATVIEANHVTKKQDLFS----AYKLTQEDKEEIEKLAKDPRIGER-IIKSIAPSIY 195
                 V+ AN+V +  +L S    +  L  + K+  +     P  G   I++ I P I+
Sbjct: 177 RCDLDPVLIANNVRRINELKSEIDISDALVMKFKQFWDHFKDAPLKGRNAILRGICPQIF 236

Query: 196 GHEDIKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
           G   +K A+AL + GG + +V    T   G  ++LL+G
Sbjct: 237 GLFTVKLAVALTLIGGVQ-HVDASGTRVRGESHMLLVG 273