Jatropha Genome Database
- JcCA0090671.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0090671.10 - phase: 0 /partial
(119 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr3g138220.1 Lissencephaly type-1-like homology motif; W... 53 3e-08
IMGA|Medtr1g086290.1 WD repeat-containing protein 5, putative ch... 53 4e-08
IMGA|Medtr2g014320.1 Photosynthetic reaction centre, cytochrome ... 51 1e-07
IMGA|Medtr2g013790.1 Photosynthetic reaction centre, cytochrome ... 51 1e-07
IMGA|AC148471_18.1 Quinoprotein amine dehydrogenase, beta chain-... 50 2e-07
IMGA|Medtr5g016350.1 WD40-like chr05_pseudomolecule_IMGAG_V3 571... 50 2e-07
IMGA|Medtr8g138930.1 Protein will die slowly, putative chr08_pse... 50 3e-07
IMGA|AC234703_19.3 Coatomer WD associated region AC234703.1 1059... 50 4e-07
IMGA|Medtr5g016370.1 Lissencephaly type-1-like homology motif; W... 50 4e-07
IMGA|AC234703_19.2 Coatomer WD associated region AC234703.1 1059... 50 4e-07
IMGA|AC234703_19.1 Coatomer WD associated region AC234703.1 1059... 49 5e-07
IMGA|Medtr1g025560.1 transducin family protein, putative chr01_p... 49 9e-07
IMGA|Medtr5g018560.1 WD40-like chr05_pseudomolecule_IMGAG_V3 677... 48 1e-06
IMGA|AC235567_67.1 Zinc finger, CCCH-type AC235567.1 251711-2490... 46 5e-06
>IMGA|Medtr3g138220.1 Lissencephaly type-1-like homology motif; WD40
associated region in TFIID subunit; WD40-like;
chr03_pseudomolecule_IMGAG_V3 35308512-35298876 E
EGN_Mt090430 20090702
Length = 669
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH+ I +S P R S +DG +WD+S +CV L GHT + + +
Sbjct: 543 GHRGMILSLSMSP-----DGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSS 597
Query: 61 DG-LIYTGSQDCTIKVWE-TTQGKLVR 85
+G ++ +GS DCT+K+W+ T K+ R
Sbjct: 598 EGSILASGSADCTVKLWDVNTSTKVSR 624
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
F S+S D AR+W + + + + GH + CV+W + I TGS D T+++W+ G
Sbjct: 476 FASSSHDRTARVWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSG 535
Query: 82 KLVR 85
+ VR
Sbjct: 536 ECVR 539
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH + + W +A C + S D R+WDV +CV GH I +
Sbjct: 501 GHLSDVDCVQW-----HANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLSMSP 555
Query: 61 DG-LIYTGSQDCTIKVWETTQGKLVRELKVILDTNWYQPFS 100
DG + +G +D TI +W+ + G+ V L W FS
Sbjct: 556 DGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFS 596
>IMGA|Medtr1g086290.1 WD repeat-containing protein 5, putative
chr01_pseudomolecule_IMGAG_V3 17031904-17030156 E
EGN_Mt090430 20090702
Length = 316
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 14 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDG-LIYTGSQDCT 72
V+ N VS S D R+W+V K V + H + +T V + DG LI +GS D +
Sbjct: 117 VNFNPQSNYIVSGSFDETVRVWEVKTGKSVHVIKAHAMPVTSVDFNRDGSLIVSGSHDGS 176
Query: 73 IKVWETTQGKLVREL 87
K+W+T G L++ L
Sbjct: 177 CKIWDTNSGALLKTL 191
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWG- 59
GH + I I+W + SAS D RIWD + CV L GH + CV +
Sbjct: 67 GHSEGINDIAWS-----SDSHYICSASDDKTLRIWDANTGDCVKTLRGHGHNVFCVNFNP 121
Query: 60 GDGLIYTGSQDCTIKVWETTQGKLVRELKV 89
I +GS D T++VWE GK V +K
Sbjct: 122 QSNYIVSGSFDETVRVWEVKTGKSVHVIKA 151
>IMGA|Medtr2g014320.1 Photosynthetic reaction centre, cytochrome c
subunit; WD40-like chr02_pseudomolecule_IMGAG_V3
3615244-3611030 E EGN_Mt090430 20090702
Length = 365
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH+ T + + P F S S D + +IWD + C+ GH+ I+ +K+
Sbjct: 98 GHRSNCTSVEFHPF-----GEFFASGSMDTNLKIWDNRKKGCIHTYKGHSQGISTIKFTP 152
Query: 61 DGL-IYTGSQDCTIKVWETTQGKLVRELK 88
DG + +G D +KVW+ T GKL+ +
Sbjct: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFN 181
>IMGA|Medtr2g013790.1 Photosynthetic reaction centre, cytochrome c
subunit; WD40-like chr02_pseudomolecule_IMGAG_V3
3232812-3228598 E EGN_Mt090430 20090702
Length = 365
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH+ T + + P F S S D + +IWD + C+ GH+ I+ +K+
Sbjct: 98 GHRSNCTSVEFHPF-----GEFFASGSMDTNLKIWDNRKKGCIHTYKGHSQGISTIKFTP 152
Query: 61 DGL-IYTGSQDCTIKVWETTQGKLVRELK 88
DG + +G D +KVW+ T GKL+ +
Sbjct: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFN 181
>IMGA|AC148471_18.1 Quinoprotein amine dehydrogenase, beta
chain-like AC148471.15 33746-31612 H EGN_Mt090430
20090702
Length = 697
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH W+T ++ P N C VS +DG+ R+WD+ + L GH ++ V+
Sbjct: 229 GHTAWVTAVAVTP---NGACA--VSGLEDGNLRVWDLETGRLKGVLAGHAARVSAVELTP 283
Query: 61 DGL-IYTGSQDCTIKVWETTQG 81
DG + S D T++VW+ T G
Sbjct: 284 DGTRAVSASYDGTVRVWDLTLG 305
>IMGA|Medtr5g016350.1 WD40-like chr05_pseudomolecule_IMGAG_V3
5718790-5712762 E EGN_Mt090430 20090702
Length = 350
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 2 HKKWITGISWEPVH--LNAPCRRFV--SASKDGDARIWDVSLRKCVICLTGHTLAITCVK 57
H K + I W P N P ++ V SAS D ++WD L K + L+GH + V
Sbjct: 226 HSKEVYTIRWSPTGPGTNNPNKKLVLASASFDSTVKLWDAELGKLIYSLSGHRDGVYSVA 285
Query: 58 WGGDG-LIYTGSQDCTIKVWETTQGKLVR 85
+ +G + +GS D +I +W GK+++
Sbjct: 286 FSPNGEYLASGSPDKSINIWSLNDGKIIK 314
>IMGA|Medtr8g138930.1 Protein will die slowly, putative
chr08_pseudomolecule_IMGAG_V3 33779354-33776416 E
EGN_Mt090430 20090702
Length = 326
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWG- 59
GH+ ++ +++ + R VSAS D R+WDV V L GHT + CV +
Sbjct: 76 GHQHGVSDLAFS-----SDSRYLVSASDDKTIRLWDVPTGSLVKTLHGHTNYVFCVNFNP 130
Query: 60 GDGLIYTGSQDCTIKVWETTQGKLVRELKVILD 92
+I +GS D T++VW+ GK ++ L D
Sbjct: 131 QSNVIVSGSFDETVRVWDVKSGKCLKVLPAHSD 163
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 14 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDG-LIYTGSQDCT 72
V+ N VS S D R+WDV KC+ L H+ +T V + DG LI + S D
Sbjct: 126 VNFNPQSNVIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGTLIVSSSYDGL 185
Query: 73 IKVWETTQGKLVREL 87
++W+ + G ++ L
Sbjct: 186 CRIWDASTGHCIKTL 200
>IMGA|AC234703_19.3 Coatomer WD associated region AC234703.1
105994-116865 E EGN_Mt090430 20090702
Length = 921
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
++ S D A++WD + CV L GHT ++ V + + +I TGS+D T+++W +T
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTY 261
Query: 82 KLVRELKVILDTNW 95
+L L L+ W
Sbjct: 262 RLENTLNYGLERVW 275
>IMGA|Medtr5g016370.1 Lissencephaly type-1-like homology motif;
WD40-like; chr05_pseudomolecule_IMGAG_V3 5736088-5728226
E EGN_Mt090430 20090702
Length = 595
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 2 HKKWITGISWEPVH--LNAPCRRFV--SASKDGDARIWDVSLRKCVICLTGHTLAITCVK 57
H K I I W P N P ++ V SAS D ++WD L K + L GH + +
Sbjct: 471 HSKEIYAIRWSPTGPGTNNPNKKLVLASASCDSTVKLWDAELGKLIHSLNGHRDRVYTIS 530
Query: 58 WGGDG-LIYTGSQDCTIKVWETTQGKLVRELK 88
+ +G + +GS D +I +W GK+++ K
Sbjct: 531 FSPNGEYLASGSPDKSINIWSLNDGKIIKTYK 562
>IMGA|AC234703_19.2 Coatomer WD associated region AC234703.1
105994-116865 E EGN_Mt090430 20090702
Length = 917
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
++ S D A++WD + CV L GHT ++ V + + +I TGS+D T+++W +T
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTY 261
Query: 82 KLVRELKVILDTNW 95
+L L L+ W
Sbjct: 262 RLENTLNYGLERVW 275
>IMGA|AC234703_19.1 Coatomer WD associated region AC234703.1
105994-116865 E EGN_Mt090430 20090702
Length = 1003
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
++ S D A++WD + CV L GHT ++ V + + +I TGS+D T+++W +T
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTY 261
Query: 82 KLVRELKVILDTNW 95
+L L L+ W
Sbjct: 262 RLENTLNYGLERVW 275
>IMGA|Medtr1g025560.1 transducin family protein, putative
chr01_pseudomolecule_IMGAG_V3 6359449-6357535 E
EGN_Mt090430 20090702
Length = 470
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 25 SASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVW-ETTQGKL 83
SAS D ++W ++ KC+ +T H A+ V G DG++++GS D T+KVW +GK
Sbjct: 236 SASWDRTVKVWRIADSKCLESITSHEDAVNAVVCGNDGIVFSGSADGTVKVWRREPRGKA 295
Query: 84 VRELKV 89
+ + V
Sbjct: 296 TKHVMV 301
>IMGA|Medtr5g018560.1 WD40-like chr05_pseudomolecule_IMGAG_V3
6779972-6778599 H EGN_Mt090430 20090702
Length = 457
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 25 SASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVW-ETTQGK 82
SAS D ++W S KC+ +T H A+ + G DGL++TGS D T+K+W QGK
Sbjct: 224 SASWDKTFKVWRASNYKCLESVTAHDDAVNALVVGFDGLVFTGSADGTVKIWRREMQGK 282
>IMGA|AC235567_67.1 Zinc finger, CCCH-type AC235567.1 251711-249065
E EGN_Mt090430 20090702
Length = 522
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 21 RRFVSASKDGDARIWDVSLRKCVICLTGHTLAITC-VKWGGDGLIYTGSQDCTIKVW 76
+ S SKD +IWD+ +C + L HT A+T + W D + +GS DCTIKVW
Sbjct: 369 KMLYSGSKDQTIKIWDLDTFECTMTLNAHTDAVTSLICW--DKFLLSGSSDCTIKVW 423