Jatropha Genome Database

JcCA0088501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0088501.10 + phase: 2 /partial
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g025290.1 Carotenoid oxygenase chr05_pseudomolecule_I...   138   8e-34
IMGA|Medtr5g025250.1 Carotenoid oxygenase chr05_pseudomolecule_I...   135   6e-33
IMGA|Medtr5g025270.1 Carotenoid oxygenase chr05_pseudomolecule_I...   131   7e-32
IMGA|Medtr3g130620.1 Carotenoid oxygenase chr03_pseudomolecule_I...    47   2e-06

>IMGA|Medtr5g025290.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10116366-10118405 E
           EGN_Mt090430 20090702
          Length = 581

 Score =  138 bits (347), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/87 (79%), Positives = 73/87 (83%), Gaps = 3/87 (3%)

Query: 9   VAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDI 68
           V  R+YGE CYGGEPFFVAR  E+ E EEDDGYLVSYVHDE  GESKFLVMDAKSP  +I
Sbjct: 495 VGCRLYGEGCYGGEPFFVAR--EDGE-EEDDGYLVSYVHDEKKGESKFLVMDAKSPEFEI 551

Query: 69  VAAVKLPRRVPYGFHGLFVXESDLKKL 95
           VA VKLPRRVPYGFHGLFV ESD+ KL
Sbjct: 552 VAEVKLPRRVPYGFHGLFVKESDITKL 578


>IMGA|Medtr5g025250.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10093326-10091325 E
           EGN_Mt090430 20090702
          Length = 578

 Score =  135 bits (339), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 70/87 (80%), Gaps = 3/87 (3%)

Query: 9   VAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDI 68
           V  R+YGE CYGGEPFFVA +      EEDDGYLVSYVHDE  GESKFLVMDAKSP  +I
Sbjct: 492 VGCRLYGEGCYGGEPFFVAMEGGE---EEDDGYLVSYVHDEKKGESKFLVMDAKSPEFEI 548

Query: 69  VAAVKLPRRVPYGFHGLFVXESDLKKL 95
           VA VKLPRRVPYGFHGLFV +SD+ KL
Sbjct: 549 VAEVKLPRRVPYGFHGLFVKQSDITKL 575


>IMGA|Medtr5g025270.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10102084-10100345 E
           EGN_Mt090430 20090702
          Length = 579

 Score =  131 bits (330), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 73/87 (83%), Gaps = 3/87 (3%)

Query: 9   VAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDI 68
           V  R+YGE CYGGEPFFVAR  E+ E EEDDGYLVSYVHDE  GES+FLVMDAKSP  +I
Sbjct: 493 VGCRLYGEDCYGGEPFFVAR--EDGE-EEDDGYLVSYVHDEKKGESRFLVMDAKSPEFEI 549

Query: 69  VAAVKLPRRVPYGFHGLFVXESDLKKL 95
           VA VKLPRRVPYGFHGLFV ESD+ +L
Sbjct: 550 VAEVKLPRRVPYGFHGLFVKESDITRL 576


>IMGA|Medtr3g130620.1 Carotenoid oxygenase
           chr03_pseudomolecule_IMGAG_V3 33198267-33194913 E
           EGN_Mt090430 20090702
          Length = 565

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 10  AARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIV 69
           A   Y E     EPFFV   P     +EDDG ++S +  E NGE   LV+D  +   + +
Sbjct: 491 AKNWYEEGAVPSEPFFV---PRPGATKEDDGVVISII-SEKNGEGYALVLDGST--FEEI 544

Query: 70  AAVKLPRRVPYGFHGLFV 87
           A  K P  +PYG HG +V
Sbjct: 545 ARAKFPYGLPYGLHGCWV 562