Jatropha Genome Database
- JcCA0087501.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0087501.20 - phase: 1 /TE/partial
(208 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC229695_24.1 Chromo AC229695.5 111963-111064 H EGN_Mt09043... 93 1e-19
IMGA|AC137826_30.1 Putative gag-pol polyprotein, identical, AC13... 84 3e-17
IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H... 82 1e-16
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 81 4e-16
IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fo... 75 2e-14
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 69 1e-12
IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H... 63 1e-10
IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H... 49 2e-06
IMGA|Medtr2g110410.1 Polynucleotidyl transferase, Ribonuclease H... 47 5e-06
>IMGA|AC229695_24.1 Chromo AC229695.5 111963-111064 H EGN_Mt090430
20090702
Length = 299
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 39 LKAATDRQKSYVDLKRRDIEYNVGDKVFLKVSPWKR-VMRFGRKGKLSPRFIGPYEILER 97
L A K Y D KRR E+ VGD V +K+ P+++ + + KL R+ GP+ +++R
Sbjct: 80 LHRAQQIMKKYADSKRRFAEFQVGDMVLVKLQPYRQHSLALHQNQKLGLRYFGPFPVIQR 139
Query: 98 IGPLAYKLALPPDLDKIHNVFHVFMLRRYRSDPSHI---LPLESIDVNRDVTYDEEPVAI 154
IG +AYKL LPP KIH VFH+ L+ + D + LPL + + + +P I
Sbjct: 140 IGLVAYKLLLPPS-AKIHLVFHIVNLKPCKGDHTMQYLPLPLTTTETGPVL----QPEDI 194
Query: 155 LAKEIKQLRNKQIPLVKVLWRSHSREEATWEREEDMRRQHPQ 196
L + KQ+P V + W + EATWE ED+ +P
Sbjct: 195 LQSRTLLVNGKQVPQVLIKWSTLPASEATWENWEDISNNYPN 236
>IMGA|AC137826_30.1 Putative gag-pol polyprotein, identical,
AC137826.21 105206-105565 H EGN_Mt090430 20090702
Length = 119
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 64/111 (57%)
Query: 1 YGRKCRTPLCWDEVGERQLLGPXXXXXXXXXXXXXXXXLKAATDRQKSYVDLKRRDIEYN 60
YGR +P+ W E G+ +L L A+ ++Q Y K RD +
Sbjct: 8 YGRGSISPIGWFEAGDVKLFVVDLVKDSEYKVRSILNKLLASLNKQNKYAYHKVRDKAFE 67
Query: 61 VGDKVFLKVSPWKRVMRFGRKGKLSPRFIGPYEILERIGPLAYKLALPPDL 111
G++V LKVS K ++RFG+KGKL+PR++GP+EIL+ + + Y+LALPP L
Sbjct: 68 AGEQVLLKVSLLKGLIRFGKKGKLNPRYVGPFEILDYLRSMTYRLALPPKL 118
>IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 7063133-7061964 H
EGN_Mt090430 20090702
Length = 356
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 87/149 (58%), Gaps = 9/149 (6%)
Query: 39 LKAATDRQKSYVDLKRRDIEYNVGDKVFLKVSPWKRVMRFGRK-GKLSPRFIGPYEILER 97
L A +R K Y D KRRDI +N+GD V++K+ P+++ G KLS R+ GPY+I+++
Sbjct: 213 LLKAQERMKHYADKKRRDITFNIGDFVYVKLRPYRQQSITGTTYSKLSKRYYGPYQIIDK 272
Query: 98 IGPLAYKLALPPDLDKIHNVFHVFMLRRYRS---DPSHILPLESIDVNRDVTYDEEPVAI 154
+GP+A+KL LPP+ K H VFH +L+ ++ + + LP E+ N+ + +P+ +
Sbjct: 273 MGPVAFKLQLPPN-TKTHLVFHCSLLKPHKGPLHNSADQLPPEAFG-NQPLI---QPLTL 327
Query: 155 LAKEIKQLRNKQIPLVKVLWRSHSREEAT 183
L ++ +V V W+ + E+ +
Sbjct: 328 LESKLDVSTTPPQQMVLVQWQGLAPEDTS 356
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
9673679-9667953 H EGN_Mt090430 20090702
Length = 1435
Score = 80.9 bits (198), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 39 LKAATDRQKSYVDLKRRDIEYNVGDKVFLKVSPWKRVMRFGRKG-KLSPRFIGPYEILER 97
L A + K Y D KRR +E+ VGD+V +K+ P+++ RK KL R+ GP+E+L R
Sbjct: 1319 LAKAQNIMKKYADQKRRLLEFEVGDQVLVKLQPYRQASVALRKNQKLGLRYFGPFEVLAR 1378
Query: 98 IGPLAYKLALPPDLDKIHNVFHVFMLRRYR---SDPSHILPL 136
+G +AYKLALPP KIH VFHV +L+ + S P LPL
Sbjct: 1379 VGSVAYKLALPPTA-KIHPVFHVSLLKPCKGSHSAPYIPLPL 1419
>IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fold
AC233082.3 16225-8671 H EGN_Mt090430 20090702
Length = 695
Score = 75.5 bits (184), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 53 KRRDIEYNVGDKVFLKVSPWKRVMRFGRKG-KLSPRFIGPYEILERIGPLAYKLALPPDL 111
KRRD +NVGD V L++ P+++ R KL+ RF GP+ +LERIG +AYKL LPPD
Sbjct: 436 KRRDHTFNVGDLVLLRLQPYRQSTVQRRSSQKLAKRFFGPFHVLERIGSVAYKLDLPPD- 494
Query: 112 DKIHNVFHVFMLRRY 126
KIH V H+ +LR Y
Sbjct: 495 SKIHPVVHISLLRPY 509
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 69.3 bits (168), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 39 LKAATDRQKSYVDLKRRDIEYNVGDKVFLKVSPWKRVMRFGR-KGKLSPRFIGPYEILER 97
L + R + R D + GD V LK+ P+++ R KL+ RF GP+ + R
Sbjct: 1284 LHISKQRMAFQANKHRIDCAFQEGDLVLLKLQPYRQTTVQHRVSQKLAKRFFGPFTVHRR 1343
Query: 98 IGPLAYKLALPPDLDKIHNVFHVFMLRRYRS-DPS-HILPL 136
IG +AY+L LPPD KIH VFHV LR Y DP+ H +PL
Sbjct: 1344 IGSMAYELRLPPD-SKIHPVFHVSQLRAYHGRDPTGHFVPL 1383
>IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H
fold chr06_pseudomolecule_IMGAG_V3 6407540-6406225 E
EGN_Mt090430 20090702
Length = 379
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 53 KRRDIEYNVGDKVFLKVSPWKRVMRFGRKG-KLSPRFIGPYEILERIGPLAYKLALPPDL 111
KRRD + GD V L++ P+++ R G KLS RF GP+ ++ RIG +AY+L LPP
Sbjct: 302 KRRDCVFYPGDLVLLRLQPYRQQTVQRRVGPKLSKRFFGPFIVIRRIGSVAYELDLPPS- 360
Query: 112 DKIHNVFHVFMLRRYRSD 129
KIH V H+ LR Y +
Sbjct: 361 SKIHLVVHISQLRAYHGE 378
>IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 14702670-14703735 H
EGN_Mt090430 20090702
Length = 331
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 39 LKAATDRQKSYVDLKRRDIEYNVGDKVFLKVSPWK-RVMRFGRKGKLSPRFIGPYEILER 97
L A ++ K+Y D RR + + GD V+LK+ P++ + + R KL+ RF GPY+I+++
Sbjct: 270 LVKALEQMKAYADKSRRSVNFTNGDWVYLKLQPYRLKSLAKKRNEKLNHRFYGPYQIIKQ 329
Query: 98 IG 99
IG
Sbjct: 330 IG 331
>IMGA|Medtr2g110410.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr02_pseudomolecule_IMGAG_V3
25944308-25946025 E EGN_Mt090430 20090702
Length = 133
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 40 KAATDRQKSYVDLKRRDIEYNVGDKVFLKVSPWKRVMRFGRKGKLSPRFIGPYEILERIG 99
+A+ R KS VD + R E+ G+ +FL++ V R + K +P+F+GP
Sbjct: 28 RASQSRHKSCVDQRSRPFEFQEGEHMFLRMISTTGVGRAPKSKKHTPKFLGP-------- 79
Query: 100 PLAYKLALPPDLDKIHNVFHVFMLRRYRSDPSHILPLESIDVNRDVTYDEEPVAILAKEI 159
V HV +R+Y DPSH++ + + + + I +
Sbjct: 80 -----------------VLHVSQMRKYMVDPSHVIMPYDVQFKENRCFKVPLMGIGVTSV 122
Query: 160 KQLRNKQIPL 169
L+ K++ L
Sbjct: 123 IYLQGKEMSL 132