Jatropha Genome Database

JcCA0081341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.30 - phase: 0 
         (156 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g127380.1 HesB/YadR/YfhF chr07_pseudomolecule_IMGAG_V...   193   3e-50
IMGA|Medtr4g141040.1 HesB/YadR/YfhF chr04_pseudomolecule_IMGAG_V...    70   5e-13

>IMGA|Medtr7g127380.1 HesB/YadR/YfhF chr07_pseudomolecule_IMGAG_V3
           29859315-29856482 F EGN_Mt090430 20090702
          Length = 160

 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 114/159 (71%), Gaps = 5/159 (3%)

Query: 3   RSSLIHRITPFFISRIRQNHRXXXXXXXXXXXXXXXXXXXXD-----DAIHLTDNCVRRM 57
           ++SL  R+ P   +R ++N                            + +H+T+NCVR+M
Sbjct: 2   QTSLFRRLAPLLAARFQRNQNIISSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKM 61

Query: 58  KELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREGIKLVVDNISYDF 117
           KEL A+E S+  K+LRL VETGGCSGFQY F+LD++ N DDRVFE+EGIKLVVDNISYDF
Sbjct: 62  KELDANESSSGGKMLRLSVETGGCSGFQYAFNLDDRFNSDDRVFEKEGIKLVVDNISYDF 121

Query: 118 VKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMVKQ 156
           VKGAT+DYVEELIRSAF+VT NPSAVGGCSCKSSFMVKQ
Sbjct: 122 VKGATVDYVEELIRSAFIVTENPSAVGGCSCKSSFMVKQ 160


>IMGA|Medtr4g141040.1 HesB/YadR/YfhF chr04_pseudomolecule_IMGAG_V3
           34725581-34723350 E EGN_Mt090430 20090702
          Length = 178

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 47  IHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINL--DDRVFERE 104
           I LTDN +  + +++ SE S D   LR+GV+ GGCSG  Y  D +++ N   DD + E +
Sbjct: 70  ISLTDNALNHLNKMR-SERSQD-LCLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYK 127

Query: 105 GIKLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSF 152
           G  +V D  S  FV G  +DY + LI   F    NP+A   C C  SF
Sbjct: 128 GFVIVCDPKSLLFVFGMQLDYSDALIGGGFNFK-NPNATQTCGCGKSF 174