Jatropha Genome Database

JcCA0081341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.10 + phase: 2 /partial
         (70 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g094120.1 Ribosomal protein L1 chr03_pseudomolecule_I...   116   3e-27
IMGA|Medtr2g107780.1 Ribosomal protein L1 chr02_pseudomolecule_I...   116   3e-27
IMGA|Medtr2g107780.2 Ribosomal protein L1; chr02_pseudomolecule_...   115   6e-27
IMGA|Medtr5g013020.1 Ribosomal protein L1 chr05_pseudomolecule_I...   115   7e-27
IMGA|Medtr5g013020.3 Ribosomal protein L1; chr05_pseudomolecule_...   114   1e-26
IMGA|Medtr5g013020.2 Ribosomal protein L1; chr05_pseudomolecule_...   114   1e-26

>IMGA|Medtr3g094120.1 Ribosomal protein L1
          chr03_pseudomolecule_IMGAG_V3 22492153-22496051 E
          EGN_Mt090430 20090702
          Length = 220

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 58/70 (82%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE IS ++  SK  NR F  TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSEAVREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          K+CMLGDAQH
Sbjct: 63 KLCMLGDAQH 72


>IMGA|Medtr2g107780.1 Ribosomal protein L1
          chr02_pseudomolecule_IMGAG_V3 25431751-25428815 E
          EGN_Mt090430 20090702
          Length = 223

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 58/70 (82%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+ ++  SK  NR F  TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSEAVREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72


>IMGA|Medtr2g107780.2 Ribosomal protein L1;
          chr02_pseudomolecule_IMGAG_V3 25431751-25428815 E
          EGN_Mt090430 20090702
          Length = 146

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 58/70 (82%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+ ++  SK  NR F  TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSEAVREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72


>IMGA|Medtr5g013020.1 Ribosomal protein L1
          chr05_pseudomolecule_IMGAG_V3 3877660-3875172 E
          EGN_Mt090430 20090702
          Length = 218

 Score =  115 bits (287), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 58/70 (82%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+ ++  SK  NR F  TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSDAVREAITGIMGDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72


>IMGA|Medtr5g013020.3 Ribosomal protein L1;
          chr05_pseudomolecule_IMGAG_V3 3877660-3875172 E
          EGN_Mt090430 20090702
          Length = 132

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 58/70 (82%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+ ++  SK  NR F  TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSDAVREAITGIMGDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72


>IMGA|Medtr5g013020.2 Ribosomal protein L1;
          chr05_pseudomolecule_IMGAG_V3 3877660-3875172 E
          EGN_Mt090430 20090702
          Length = 140

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 58/70 (82%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+ ++  SK  NR F  TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSDAVREAITGIMGDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72