Jatropha Genome Database

JcCA0081161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081161.20 - phase: 0 
         (367 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g106780.1 Homoserine kinase; chr05_pseudomolecule_IMG...   479   e-136

>IMGA|Medtr5g106780.1 Homoserine kinase;
           chr05_pseudomolecule_IMGAG_V3 43022538-43025033 E
           EGN_Mt090430 20090702
          Length = 431

 Score =  479 bits (1233), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/372 (66%), Positives = 282/372 (75%), Gaps = 10/372 (2%)

Query: 2   AAICFLSPVKPITFSSSVHSKRSPL----FRC-----NFSLPTITTTEPEPVYTSVRSFA 52
           A+ CF     P+ F+    + +  +     RC       S     TT+P PVY+SV++FA
Sbjct: 3   ASTCFFQSSSPLPFNFKQKNNQIHISIFRIRCYNTSQKHSSVVTLTTDPPPVYSSVKAFA 62

Query: 53  PATVANLGPGFDFLGCAVDGLGDFVSVRIDPSVHPGEISISDITGNH-ACKKLSKDPLRN 111
           PATVANLGPGFDFLGCAVDG+GD VS+++DP VHPGEISIS I+G      KLSK+PL N
Sbjct: 63  PATVANLGPGFDFLGCAVDGIGDTVSLKVDPDVHPGEISISHISGQTPNIHKLSKNPLWN 122

Query: 112 CAGISAIATMKMLNIRSVGLSLTLEKGLPXXXXXXXXXXXXXXXXXXXNEIFGGKLEVKD 171
           CAGI+AI  MKML IRSVGLSL+LEKGLP                   NEIFG +L V D
Sbjct: 123 CAGIAAIEAMKMLRIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEIFGKRLSVDD 182

Query: 172 LILAGLESEAKVSGYHADNIAPAIMGGFVLINSYDPLELMSLKFPGEKELFFVLVTPEFE 231
           L+LA L+SE KVSGYHADN+AP+IMGGFVLI +Y PLELM LKFP EK+L+FVLVTPEFE
Sbjct: 183 LVLACLKSEEKVSGYHADNVAPSIMGGFVLIRNYQPLELMPLKFPSEKDLYFVLVTPEFE 242

Query: 232 APTKKMRAALPEEIGMPHHVWNCSQAGALVASVLQGDLMGLGKALSNDKIVEPKRAPLIP 291
           APTKKMRAALP EIGMPHHVWN SQA ALVASVLQGDL  LGKALS+DKIVEPKRAPLIP
Sbjct: 243 APTKKMRAALPLEIGMPHHVWNSSQAAALVASVLQGDLFMLGKALSSDKIVEPKRAPLIP 302

Query: 292 GMEEVKKAAIRAGAFGCTISGAGPTAVAVIDNEERGKEIGERMVEAFLKEGNLKAVSLVK 351
           GM+ VKKAAI+AGAFGCTISGAGPTAVAV DNEE+G  I + MV AF KEGNL A + VK
Sbjct: 303 GMDAVKKAAIQAGAFGCTISGAGPTAVAVTDNEEKGHIIAQHMVLAFQKEGNLNASANVK 362

Query: 352 RLDRVGARLIGS 363
           +LDR+GARLI S
Sbjct: 363 QLDRLGARLISS 374