Jatropha Genome Database
- JcCA0080871.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0080871.20 + phase: 0 /TE
(706 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 282 3e-76
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 276 3e-74
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 275 4e-74
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 275 7e-74
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 253 3e-67
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 211 1e-54
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 162 7e-40
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 141 9e-34
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 130 2e-30
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 104 2e-22
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 102 7e-22
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 97 3e-20
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 81 1e-15
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 80 3e-15
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 76 7e-14
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 65 9e-11
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 62 8e-10
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 59 8e-09
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 59 9e-09
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 52 1e-06
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 51 2e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/439 (36%), Positives = 250/439 (56%), Gaps = 35/439 (7%)
Query: 155 EIALRRSKRQRR-PAISSDFV-------VYSLEHDCEFS-IDKDPVSFQKAM-------- 197
++ RRS R R P D+V Y L H ++ I + SF ++
Sbjct: 682 HVSPRRSNRVRTAPLHLQDYVCNSVHSTTYPLSHYINYNNISTNHASFISSLQTTPEPTT 741
Query: 198 --ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKA 255
E + W AM+ E+ ++ WD+V+LP K +GC+W++K K ++ G+IERYKA
Sbjct: 742 YVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIERYKA 801
Query: 256 RLVAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAFFNGVLXEEV 315
RLVAKGYTQ +G+DY ET+SPV+K ++R+++AL + ++ LHQ+DV AF +G L E+V
Sbjct: 802 RLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQEDV 861
Query: 316 YMDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENTVDRCIYMKV 375
YM P G + K + +CKLKKS+YGLKQASRQWY K + + +I+ + D +++K
Sbjct: 862 YMILPPGINI-AKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKK 920
Query: 376 SGSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEIFCDRSQGL 435
S +L++YVDDI+L+ + ++K L +F++KD+G+ + +GIE+ +
Sbjct: 921 SSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEV----AHSK 976
Query: 436 LGXS--QRAYIDKVLERFRMEKCSAGIVPIQK-GDRFSKMQCPKNDLERKEMESIPYASV 492
LG S QR Y +L + G PI D +K+ +D + Y +
Sbjct: 977 LGISLYQRKYCLDLLH----DSGHIGSKPISTPSDPSTKLH---HDTSTPYDDIPAYRRL 1029
Query: 493 VGSLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKSSHL 552
VG L+Y+ TRPDI+F L ++ SNP + H AA + RYL+ L + ++S L
Sbjct: 1030 VGRLLYLNN-TRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSL 1088
Query: 553 ELVGYSDSDYAGCVDSRKS 571
L G+SD+D+AGC+D+RKS
Sbjct: 1089 TLQGFSDADWAGCLDTRKS 1107
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 276 bits (706), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 249/446 (55%), Gaps = 40/446 (8%)
Query: 152 ISQEIALRRSKRQRRP---------AISSD--FVVYSLEH----------DCEFSIDKD- 189
I Q +R+S R +P ++S D FV Y + H C F++ D
Sbjct: 821 IPQPPVIRKSSRITQPPTHLQDYVCSVSDDTSFVQYPISHYLSYNNLSSSHCAFALSLDS 880
Query: 190 ---PVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDS 246
P ++ +A + D W AM+ E+ ++ + W LV+LP K + C+W++K K +
Sbjct: 881 HTEPTTYAEASKFDC---WKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHA 937
Query: 247 KGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAF 306
G+IERYKARLVAKGY Q +G+DY +T+SPV+K ++R I+AL + +HQ+DV AF
Sbjct: 938 DGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAF 997
Query: 307 FNGVLXEEVYMDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENT 366
+G L E+VYM P+G + K N +CKL KS+YGLKQASR+WY K + + + ++++T
Sbjct: 998 LHGDLQEDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQST 1056
Query: 367 VDRCIYMKVSGSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIE 426
D +++K + + L++YVDD++++ + D+K L E+KD+G+ + +G+E
Sbjct: 1057 SDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLE 1116
Query: 427 IFCDRSQGLLGXSQRAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMES 486
+ SQG + QR Y +L G + + S C +
Sbjct: 1117 V-AHSSQG-ISLCQRKYCLDLLTDI-------GFLAAKPASTPSDPSCKLHADGGPPFSD 1167
Query: 487 IP-YASVVGSLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILT 545
IP Y ++G L+Y+ T TRP I+FA L ++ ++P H+ AA ++ RYL+ + L
Sbjct: 1168 IPSYRRLIGRLIYL-TNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLF 1226
Query: 546 YRKSSHLELVGYSDSDYAGCVDSRKS 571
+ + S L L GYSD+D+AGC+DSR+S
Sbjct: 1227 FPRDSSLFLSGYSDADWAGCLDSRRS 1252
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 275 bits (704), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 198 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKARL 257
E + E W AM+ E+Q++ W+ V+LP K +GC+WVFK KR + G+IERYKARL
Sbjct: 872 EANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARL 931
Query: 258 VAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAFFNGVLXEEVYM 317
VAKGYTQ +G+DY +TFSPV+K ++R+I+AL + LHQ+DV AF +G L E VYM
Sbjct: 932 VAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYM 991
Query: 318 DQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENTVDRCIYMKVSG 377
P G + N +CKL KS+YGLKQASR+WY K + + + + + D ++ K +G
Sbjct: 992 TLPPG-ISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTG 1050
Query: 378 SKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEIFCDRSQGLLG 437
+ +L++YVDDI+L+ + + +K L F++KD+G+ F +G+E+ SQ +
Sbjct: 1051 TSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEV--AHSQLGIS 1108
Query: 438 XSQRAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMESIP-YASVVGSL 496
Q+ Y +L +G + + S + E IP Y ++G L
Sbjct: 1109 LCQKKYCLDLL-------ADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRL 1161
Query: 497 MYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKSSHLELVG 556
+Y+ T TRPDI++ L ++ S P H AA +V RYL+ L + ++S L+L G
Sbjct: 1162 LYLNT-TRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQG 1220
Query: 557 YSDSDYAGCVDSRKS 571
YSD+D+AGC+D+R+S
Sbjct: 1221 YSDADWAGCLDTRRS 1235
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 275 bits (702), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 185/568 (32%), Positives = 287/568 (50%), Gaps = 40/568 (7%)
Query: 17 VWGCPAEVWIYNQHEKKLDARTVSGFFIGYPEKSKGYRFYYPNHGTRIVKSGNAQFIEN- 75
V+GC H KL R FIGY KG+ Y H I S + F EN
Sbjct: 721 VFGCLCYASTLQSHTTKLKHRARKSIFIGYQSGYKGFTLY-DLHSREIFISRHVTFHENF 779
Query: 76 ---SQISGSSEPRKVNVQEIQIKNPTQV--DFPNXXXXXXXXXXXXRFDNMVEQXNNIPN 130
S S+ P + Q +PT V + P+ + + I
Sbjct: 780 LPYPHTSSSTSP---DWQYFSYFHPTPVAPNLPSPPIIDDIIAPDHPSPDPTPPTSPILP 836
Query: 131 --PQNDHIN-DEPANNEXFTNDQVISQEIALRRSKRQRRPAISSDFVVYSLEHDCEFSID 187
P++ N P+ + + + + + + S + S F V SL
Sbjct: 837 IVPRHSTRNVTAPSYLQDYICNNIHAFTYPITHSLSHHHLSNSRSFFVMSLH------TQ 890
Query: 188 KDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSK 247
+P S+ +A + D W +AM+ E+Q++ W LV+LP K +GC+W++K K +
Sbjct: 891 PEPKSYAEASKLDC---WKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHAD 947
Query: 248 GNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAFF 307
G +ERYKARLVAKGY Q +G+DY +T+SPV+K ++R+++AL + + LHQ+DV AF
Sbjct: 948 GTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFL 1007
Query: 308 NGVLXEEVYMDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENTV 367
+G L E+VYM P G + + K N +CKL KS+YGLKQASR+WY K + + + + T
Sbjct: 1008 HGDLQEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATS 1066
Query: 368 DRCIYMKVSGSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEI 427
D +++K + + +L++YVDDI+L+ N + +K L F++KD+G+ + +GIE+
Sbjct: 1067 DYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEV 1126
Query: 428 FCDRSQGLLGXS--QRAYIDKVLERFRMEKCSAGIVPIQK-GDRFSKMQCPKNDLERKEM 484
+ LG S QR Y +L + S G PI D K+ +
Sbjct: 1127 ----AHSKLGISLCQRKYCLDLLA----DIGSLGSKPISTPSDSSIKLHLDSSS----PF 1174
Query: 485 ESIPYA-SVVGSLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHI 543
E +P +VG L+Y+ TRPDI+F L ++ S P H AA +V +YL+
Sbjct: 1175 EDVPACRRLVGRLLYLNN-TRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKG 1233
Query: 544 LTYRKSSHLELVGYSDSDYAGCVDSRKS 571
L + +SS L L G+SD+D+AGC+D+R+S
Sbjct: 1234 LFFPRSSSLNLQGFSDADWAGCIDTRRS 1261
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 207/370 (55%), Gaps = 19/370 (5%)
Query: 168 AISSDFVVYSLEHDCEFSIDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVEL 227
+ S + ++ HDCE P S++ E W AM +E ++ DN W L L
Sbjct: 320 SFDSQSFIMNISHDCE------PNSYE---EASMDPAWQKAMTQEFLALHDNNTWTLTNL 370
Query: 228 PEGSKKVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSIRIIL 287
P+ K VGC+WV+K K + G++ERYKARLV KGYTQ GIDY ETFSPV K ++R ++
Sbjct: 371 PKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLI 430
Query: 288 ALVAHYDLELHQMDVKTAFFNGVLXEEVYMDQPEGFVVTGKENLMCKLKKSIYGLKQASR 347
A +HQ+DV AF +G L EEVYMD P G + T ++L+CKL KS+YGLKQASR
Sbjct: 431 VAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPG-LATPHKDLVCKLNKSLYGLKQASR 489
Query: 348 QWYLKFNNTITSYGFIENTVDRCIYMKVSGSKLIMLVLYVDDILLSANDVGLLHDVKGFL 407
QWY K + + G+ + D ++ K G+ + L +YVDDILL+ D + ++K FL
Sbjct: 490 QWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFL 549
Query: 408 SKNFEMKDMGEASFMIGIEIFCDRSQGLLGXSQRAYIDKVLERFRMEKCSAGIVPIQKGD 467
F++KD+G + +G+E+ + G+L SQR ++ +L+ F + + P+
Sbjct: 550 DNQFKIKDLGRLHYFLGLEVLY-KDDGILV-SQRKFVLDLLKEFNCDHMAPLSSPLDPNI 607
Query: 468 RFSKMQCPKNDLERKEMESIPYASVVGSLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWK 527
+ + D + Y ++G L ++ T TR D+++ V +L +Y +P H
Sbjct: 608 KLRSHEGKVLD------DPTYYRKLIGKLNFL-THTRLDLAYGVQLLSQYMQDPREPHLH 660
Query: 528 AAKKVRRYLQ 537
AA + RYL+
Sbjct: 661 AAFHMLRYLK 670
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 175/302 (57%), Gaps = 12/302 (3%)
Query: 209 MKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDGI 268
M+ E+ ++ W +V+LP K +GC+W+FK K + G+IERYKARLVAKGY Q +G+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 269 DYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAFFNGVLXEEVYMDQPEGFVVTGK 328
DY +T+SPV+K ++R I+AL + LHQ DV AF +G L E+VYM P G V
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 329 ENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENTVDRCIYMKVSGSKLIMLVLYVD 388
++ +CKL KS+YGL+QAS +WY K N + S G+ + D +++K + S +L++YVD
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 389 DILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEIFCDRSQGLLGXSQRAYIDKVL 448
D++L+ + + + +KG L F++KD+G+ + +G+E+ +S L QR Y +L
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISL--CQRKYCLDLL 237
Query: 449 ERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMESIP-YASVVGSLMYVQTCTRPDI 507
E + P + P IP Y ++G L+Y+ T TRPDI
Sbjct: 238 EDSGLTGSKPMNTPSDPSIKLHNDSAP-------SFPDIPAYRRLIGRLLYLNT-TRPDI 289
Query: 508 SF 509
++
Sbjct: 290 TY 291
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 177/377 (46%), Gaps = 74/377 (19%)
Query: 198 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKARL 257
E + E W AM+ E+ ++ + W +++ P +K +GC+W++K K ++ IERYKARL
Sbjct: 297 EANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIERYKARL 356
Query: 258 VAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAFFNGVLXEEVYM 317
VAKGY Q +G+DY +T+SPV+K +IR+ +
Sbjct: 357 VAKGYNQVEGLDYFDTYSPVAKHTTIRLA--------------------------SRKWY 390
Query: 318 DQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENTVDRCIYMKVSG 377
++ +V +G KQAS L FI+++
Sbjct: 391 EKLASLLVN-------------HGYKQASADHSL----------FIKHST---------- 417
Query: 378 SKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEIFCDRSQGLLG 437
++ L++YVDDI+L+ N + +K L +F++KD+G+ + +G+E+ + LG
Sbjct: 418 TQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEV----AHSKLG 473
Query: 438 XS--QRAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMESIP-YASVVG 494
S QR Y +L + P + P IP Y +VG
Sbjct: 474 ISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPL-------YTDIPAYRRLVG 526
Query: 495 SLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKSSHLEL 554
L+Y+ TRPDI+F L ++ S P H+ AA +V RYL+ L + +SS +
Sbjct: 527 RLLYLN-ATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPYI 585
Query: 555 VGYSDSDYAGCVDSRKS 571
GYSD+D+AGC D+R+S
Sbjct: 586 QGYSDADWAGCRDTRRS 602
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Query: 198 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKARL 257
E + E W AM+ E+ ++ + W +++LP +K +GC+W++K K + G IERYKARL
Sbjct: 917 EANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIERYKARL 976
Query: 258 VAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAFFNGVLXEEVYM 317
VAKGY Q +G+DY +T+SPV+K +IR++LAL + + LHQ+DV AF +G L E+VYM
Sbjct: 977 VAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYM 1036
Query: 318 DQPEGFVVTGKEN 330
D P G V T K N
Sbjct: 1037 DIPPG-VSTNKPN 1048
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/451 (25%), Positives = 179/451 (39%), Gaps = 103/451 (22%)
Query: 126 NNIPNPQNDHINDEPANNEXFTNDQVISQEIALRRSKRQRR-PAISSDFVVYSLEHDCEF 184
+N P + +P+ + + ++S R S R R PA DFV +L
Sbjct: 72 DNTPIFTTEPATPDPSISTSQPHAPLVSALTQARHSTRTRTTPAHLQDFVCSALPISASL 131
Query: 185 S---IDKDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSK-KVGCKWVF 240
S + SF A+ D F Q+ SD + W L PE S + W+F
Sbjct: 132 SYHPLSPSYCSFTLAISSDIEPSSFK------QAQSDPR-WQLAMSPELSALEATGTWIF 184
Query: 241 KTKRDSKGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQM 300
+D SP+ K R+
Sbjct: 185 ---------------------------VDPPPNISPIGSKWIFRL--------------N 203
Query: 301 DVKTAFFNGVLXEEVYMDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSY 360
D F +G L E+VYM P+G V + +CKL KS+YGLKQASR+W+ K + + +
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTI 262
Query: 361 GFIENTVDRCIYMKVSGSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEAS 420
GF++ + D ++ S + L++YV H KG
Sbjct: 263 GFVQASADHSFLIRASPTSFTALLIYVA------------HSSKG--------------- 295
Query: 421 FMIGIEIFCDRSQGLLGXSQRAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLE 480
+ QR Y +L + C + P+ P D
Sbjct: 296 ---------------ISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFD-- 338
Query: 481 RKEMESIPYASVVGSLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTK 540
+ + Y ++G L+Y+ T TRPDISFA L ++ + P ++H + A V RYLQ
Sbjct: 339 ----DVLAYRCLIGCLLYLTT-TRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCP 393
Query: 541 DHILTYRKSSHLELVGYSDSDYAGCVDSRKS 571
L + ++S ++L+G+SD+D+ GCVDSR+S
Sbjct: 394 GRGLFFPRTSEMQLLGFSDADWGGCVDSRRS 424
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 108/202 (53%), Gaps = 11/202 (5%)
Query: 371 IYMKVSGSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEIFCD 430
++ K + S +L++YVDDI+L+ N + +K L +F++KD+G+ +++G+E+
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEV-AH 59
Query: 431 RSQGLLGXSQRAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMESIP-Y 489
QG+ QR Y +L +G + + S ++ E IP Y
Sbjct: 60 SKQGI-SLCQRKYCLDLLS-------DSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSY 111
Query: 490 ASVVGSLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKS 549
++G L+Y+ + TRPDI+F L ++ S P H AA +V +YL+ L + ++
Sbjct: 112 RRLIGRLLYLNS-TRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRN 170
Query: 550 SHLELVGYSDSDYAGCVDSRKS 571
S L L G+SD D+AGCVDSR+S
Sbjct: 171 SSLHLQGFSDVDWAGCVDSRRS 192
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 29/150 (19%)
Query: 209 MKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDGI 268
M+ E+ ++ + W LV+LP K +GC+W++K K + G+I+RYKARLV KGY Q +G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 269 DYKETFSP----------------------------VSKKDSIRIILALVAHYDLELHQM 300
DY +T+SP V+K ++R ++AL + +H++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 301 DVKTAFFNGVLXEEVYMDQPEGFVVTGKEN 330
D +AF +G L E+VYM P+G + T K N
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQG-ITTSKPN 149
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/440 (23%), Positives = 185/440 (42%), Gaps = 125/440 (28%)
Query: 132 QNDHINDEPANNEXFTNDQVISQEIALRRSKRQRRPAISSDFVVY----SLEHDCEFSID 187
+N I ++ ++E TN++VIS+E++ RP + + + D E D
Sbjct: 127 KNVIIENKKESDELLTNEEVISEEVSYEEPTTIARPQRNKQMLRRLQDCQVTGDDEIGSD 186
Query: 188 KDPVSFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSK 247
+ V F AM D + +++S NQ W+L++L +G K + KWVFK K + +
Sbjct: 187 GELVHF--AMLVDTKPLY------KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPE 238
Query: 248 GNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSIRIILALVAHYDLELHQMDVKTAFF 307
G I ++KARLVA R+ L
Sbjct: 239 GKIVKHKARLVA------------------------RVFL-------------------- 254
Query: 308 NGVLXEEVYMDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENTV 367
+ EGF T ++ KL K++YGLKQA R W + GF +
Sbjct: 255 -----------KKEGFDYT---EVVFKLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLA 300
Query: 368 DRCIYMKVS-GSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIE 426
+ +Y+K S G+ L+++ L + L KG +
Sbjct: 301 EHGVYVKGSEGTSLLIICLEI------------LRTTKGLIL------------------ 330
Query: 427 IFCDRSQGLLGXSQRAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMES 486
+Q Y ++ ++F M ++ I + + ++++ E K ++
Sbjct: 331 ------------NQTKYDTEIQKKFNMLDFNSSIT-LAYANNINEVK-----EEDKGVDP 372
Query: 487 IPYASVVGSLMYVQTC-TRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILT 545
++G L Y+ C +R DIS++VG++ ++ SNP H+ AAKK+ RY+ GT + +
Sbjct: 373 TILRRLIGLLRYL--CQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGIL 430
Query: 546 Y---RKSSHLELVGYSDSDY 562
+ +++ L ++ YSD+D+
Sbjct: 431 FPEAQETEQLSMIDYSDADW 450
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 381 IMLVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEIFCDRSQGLLGXSQ 440
+ +++YVDD++++ ND + + K +L + F MKD+G + +G+E+ R L Q
Sbjct: 1 MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLEL--ARGANGLFMCQ 58
Query: 441 RAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPK-NDLERKEMESIPYASVVGSLMYV 499
R Y +L+ +M C P+++ + + P +D R Y ++ L+Y+
Sbjct: 59 RKYTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSR-------YRRLISRLIYL 111
Query: 500 QTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKSSHLELVGYSD 559
T P+I+++V +L +V RYL+ + + K + L+LV Y D
Sbjct: 112 -TIMHPEITYSVHIL--------------TMRVLRYLKSSPGQGIILPKENDLQLVAYCD 156
Query: 560 SDYAGCVDSRKST 572
SD+A C +R+ST
Sbjct: 157 SDWASCPLTRRST 169
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 335 LKKSIYGLKQASRQWYLKFNNTITSYGFIENTVDRCIYMKVSGSKLIMLVLYVDDILLSA 394
L+KS+YGLKQASR WY K + + YGF E+ D ++ S + +++YVDD++++
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAG 64
Query: 395 NDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEI 427
ND + + K +L + F MKD+G + +G+E+
Sbjct: 65 NDTDTITNFKQYLKQCFHMKDLGPLKYFLGLEL 97
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 198 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKARL 257
E + E W AM+ E+ ++ + W +++ P +K +GC+W++K K + G IERYKARL
Sbjct: 390 EANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIERYKARL 449
Query: 258 VAKGYTQ 264
VAKGY Q
Sbjct: 450 VAKGYNQ 456
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 54/93 (58%)
Query: 209 MKEEMQSMSDNQVWDLVELPEGSKKVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDGI 268
M ++++++ W L L + +GCKW ++ K G IER+K L+ K YT+++G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 269 DYKETFSPVSKKDSIRIILALVAHYDLELHQMD 301
+ +TFS V+K + ++L++V L Q+D
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 317 MDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITSYGFIENTVDRCIYMKVS 376
M QP GFV N +CKL+KS+YGLKQA + W+ + Y F D +++ V
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 377 GSKLIMLVLYVDDILLS 393
+ ++YVDDI L+
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 231 SKKVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDGIDY 270
+K VGC+WV+K K + G IE+YKARLVAKGYTQ +G D+
Sbjct: 11 AKIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 13/134 (9%)
Query: 432 SQGLLGXSQRAYIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMESIPYAS 491
S+GL+ Q Y ++L++F M C++ I + + E + ++ +
Sbjct: 7 SKGLIL-HQTDYASEILKKFNMLDCNSTITHADANIIYEVKE------EDEGVDPTMFRR 59
Query: 492 VVGSLMYVQTC-TRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDH---ILTYR 547
++GSL Y+ C +RP IS+ VG++ R+ SNP ++ +AKK+ RY+ T + L +
Sbjct: 60 LIGSLRYL--CQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQ 117
Query: 548 KSSHLELVGYSDSD 561
+ L++ GYSD+D
Sbjct: 118 ATEQLDMEGYSDAD 131
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 300 MDVKTAFFNGVLXEEVYMDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLK 352
MDV AF +G L E+VYM P GF T L+CKL+KS Y LK A + W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFH-TSSSRLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 39/192 (20%)
Query: 383 LVLYVDDILLSANDVGLLHDVKGFLSKNFEMKDMGEASFMIGIEIFCDRSQGLLGXSQRA 442
+++YV D++++ N+ LL + L+ F +KD+G + +GIE+ +S G L +Q
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVK-PQSNGSLLITQSK 59
Query: 443 YIDKVLERFRMEKCSAGIVPIQKGDRFSK-MQCPKND--LERKEMESIPYASVVGSLMYV 499
Y+ +L + M++ + P+ + SK P +D L R + ++ YA+++G L
Sbjct: 60 YVRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGPL--- 116
Query: 500 QTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYR--KSSHLELVGY 557
V R+L+GT L R + L ++ Y
Sbjct: 117 ------------------------------SNVLRHLKGTLSWGLLVRPIPTYPLSILAY 146
Query: 558 SDSDYAGCVDSR 569
D+D+ D R
Sbjct: 147 CDADWGSDPDDR 158