Jatropha Genome Database

JcCA0080751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.20 - phase: 0 /partial
         (413 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g094720.1 Polynucleotidyl transferase, Ribonuclease H...    54   2e-07
IMGA|Medtr2g014660.1 Protein of unknown function DUF1723 chr02_p...    53   3e-07
IMGA|Medtr3g016940.1 Protein of unknown function DUF1723 chr03_p...    52   7e-07
IMGA|Medtr5g022780.1 hypothetical protein chr05_pseudomolecule_I...    49   4e-06
IMGA|Medtr7g047730.1 Protein of unknown function DUF1723 chr07_p...    49   6e-06

>IMGA|Medtr5g094720.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr05_pseudomolecule_IMGAG_V3 37505006-37502180 E
           EGN_Mt090430 20090702
          Length = 605

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 32/236 (13%)

Query: 1   VNLGKARSGASATDASA--FWDLLDPPMRARVVAAGFGDYAAGLRRTQPHFPPAMRYALM 58
           +N GK        +AS   FW+ ++      ++  G+         T  H   AM  A+ 
Sbjct: 11  INAGKNMKELGKLEASVRWFWEPMEGSDLHDLIYTGYS--------TVTH---AMIRAMC 59

Query: 59  ERWNDCTHTLVFGFGKMTLTPVDYAAITGLHFTGPVPPLD-ARYQTVAIGAQLVRSLLGV 117
           ERW+  T +     G+MT+T  D   +  +   G +   D A  Q  AI   L+  L  +
Sbjct: 60  ERWHTETSSFHLPVGEMTVTLDDVHNLLHIPIHGRMLNHDEAMGQERAI--DLMTRLFSM 117

Query: 118 T-----TQTRYTVQGCMSYETVFRFWAERIRTRLEAWRELPEDVRPAAPAYTREERDQAA 172
           +      + R    G +SY T+ R +   +   +EA R L E   P      RE   +  
Sbjct: 118 SDADARAEIRSESVGHISYPTLKRVYEHHL---IEA-RRLEE---PRTREDLRERGMRRV 170

Query: 173 W---SFLFYIISSQLLCTSQNKG-DPAVLECLRDLSQVGSFDWATLGLAHLYHGLD 224
           W   SFL Y++   L     N+  D   L+C+ DL  +G + W  + LA++Y  LD
Sbjct: 171 WCVRSFLLYLVGCALFTNKTNRHIDLIYLDCMADLQAIGKWSWGGMTLAYMYDYLD 226


>IMGA|Medtr2g014660.1 Protein of unknown function DUF1723
           chr02_pseudomolecule_IMGAG_V3 3833452-3832576 E
           EGN_Mt090430 20090702
          Length = 217

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 14/171 (8%)

Query: 55  YALMERWNDCTHTLVFGFGKMTLTPVDYAAITGLHFTGPVPPLDARYQTVAIGAQLVRSL 114
           YA +ERW++ T +    F +MT+T  D A++  LH      P+D     + +  + +  L
Sbjct: 41  YAFLERWHEETSSFHLPFREMTVTLDDVASL--LHI-----PIDG----MLLSHESISPL 89

Query: 115 LGVTTQTRYTVQGCMSYETVFRFWAERIRTRLEAWRELPEDVRPAAPAYTREERDQAAWS 174
              T   R  V+        F +  E  + RL+  R+L  +            RDQA   
Sbjct: 90  GSSTFDARREVKMTKGAHCQFGYLKEIFKERLKEQRDLAAEY--GVTEEVERLRDQAVRI 147

Query: 175 FLFYIISSQLLC-TSQNKGDPAVLECLRDLSQVGSFDWATLGLAHLYHGLD 224
           ++ Y++   +    SQ   D   L+  RDL  V  F W    LA LY  L+
Sbjct: 148 YMLYLVGITIFTDKSQCTVDVVYLKYFRDLDLVSGFSWGAAALAQLYKELN 198


>IMGA|Medtr3g016940.1 Protein of unknown function DUF1723
           chr03_pseudomolecule_IMGAG_V3 3419420-3421701 E
           EGN_Mt090430 20090702
          Length = 623

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 120/317 (37%), Gaps = 39/317 (12%)

Query: 9   GASATDASAFWDLLDPPMRARVVAAGFGDYAAGLRRTQPHFPPAMRYALMERWNDCTHTL 68
           G    + + FWD    P+R     +G  D       T PH   A+   L ERW+  T T 
Sbjct: 140 GRPNGNENWFWD----PLRQ----SGLHDLVYLGYSTVPH---ALPMTLCERWHLETSTF 188

Query: 69  VFGFGKMTLTPVDYAAITGLHFTGPVPPLDARYQTVAIGAQLVRSLLGVTTQTRYTVQGC 128
               G+MT+T  D A +T L   G +     + +    GA L+   LGV+      + G 
Sbjct: 189 HMSMGEMTVTLDDVACLTHLPIEGRMLS-HGKKRPKHEGAALLMRHLGVSQHEAEKICGQ 247

Query: 129 -----MSYETVFRFWAERI-RTRLEAWRELPEDVRPAAPAYTREERDQAAWSFLFYIISS 182
                +SY  +  F+   + R  L A  E PE+++  A       R      +L Y++  
Sbjct: 248 EYGEYISYPRLRDFYTTYLSRANLLAGTEDPEELQELARV-----RTYCVRCYLLYLVGC 302

Query: 183 QLLCTSQNKGDPAVLECLRDLSQVG--SFDWATLGLAHLYHGL-DVWTHGS----GESNW 235
            L     NK +  V     + S  G  ++ W  + LA+LY  L D    G     G    
Sbjct: 303 LLFGDRSNKRNELVYLTTMEDSYAGMRNYSWGGMTLAYLYGELADACRPGDRALGGSVTL 362

Query: 236 LFIRPLEVWSYEYCIYPGGPSGDSPVESRRIPRYLAHCHH----TYAS-----GEDPEYW 286
           L +R L  + Y   I+   P+ D         R+  H  H    TY S       D   W
Sbjct: 363 LTVRKLIFYFYVNFIFFVDPNTDYMENYPVAARWKLHKGHREGITYRSLLDRIQLDDVCW 422

Query: 287 RSFLNDREVSDLSLTPW 303
           R +   RE+ D     W
Sbjct: 423 RPYEEHREIQDFEEVFW 439


>IMGA|Medtr5g022780.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 8902349-8901212 E
           EGN_Mt090430 20090702
          Length = 272

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 53  MRYALMERWNDCTHTLVFGFGKMTLTPVDYAAITGLHFTGPVPPLD-ARYQTVAIGAQLV 111
           M  A+ ERW+  T +     G MT+T  D   +  +   G +   D A  Q  AI   L+
Sbjct: 1   MIRAMCERWHTETSSFHLLVGDMTITLDDVHHLLHIPIHGRMLDHDEAMGQERAI--DLM 58

Query: 112 RSLLGVT-------TQTRYTVQGCMSYETVFRFWAERIRTRLEAWRELPEDVRPAAPAYT 164
             LLG++       T T   V   ++Y T+ R +   +    EA R   ED +       
Sbjct: 59  TRLLGMSDADARAETMTESAVH--INYPTLKRVYEGHL---TEARR--LEDPQTREELQE 111

Query: 165 REERDQ-AAWSFLFYIISSQLLCTSQNKG-DPAVLECLRDLSQVGSFDWATLGLAHLYHG 222
           R  R Q    SFL Y++   L     N+  D   L+C+ DL  +G + W  + LA+LY  
Sbjct: 112 RARRRQWCVRSFLLYLVGCALFTNKTNRHIDLIYLDCMADLQAIGKWSWGGMALAYLYDY 171

Query: 223 LD 224
           LD
Sbjct: 172 LD 173


>IMGA|Medtr7g047730.1 Protein of unknown function DUF1723
           chr07_pseudomolecule_IMGAG_V3 12048275-12046583 E
           EGN_Mt090430 20090702
          Length = 494

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 122/324 (37%), Gaps = 47/324 (14%)

Query: 9   GASATDASAFWDLLDPPMRARVVAAGFGDYAAGLRRTQPHFPPAMRYALMERWNDCTHTL 68
           G    + + FWD L       +V  G+         T PH   A+   L ERW+  T T 
Sbjct: 24  GRPNGNENWFWDALPQSGLHDLVYLGYS--------TVPH---ALLLTLCERWHPETSTF 72

Query: 69  VFGFGKMTLTPVDYAAITGLHFTGPVPPLD-ARYQTVAIGAQLVRSLLGVTTQTRYTV-- 125
               G+MT+T  D A +T L   G +  LD  +      GA L+ + LGV       +  
Sbjct: 73  HMPMGEMTVTLDDVACLTHLPIEGRM--LDHGKKMPKHEGAALLMTYLGVAQHEAEKICN 130

Query: 126 ---QGCMSYETVFRFWAERI-RTRLEAWRELPEDVRPAAPAYTREERDQAAWSFLFYIIS 181
               G +SY  +  F+   + R  + A  E PE+V   A   T   R      +L Y++ 
Sbjct: 131 QEYGGYISYPRLRDFYTSYLGRANVLAGTEDPEEVEELARVRTYCVR-----CYLLYLVG 185

Query: 182 SQLLCTSQNKGDPAV-LECLRD-LSQVGSFDWATLGLAHLYHGL-DVWTHG----SGESN 234
             L     NK    + L  + D  + + ++ W  + LA+LY  L D    G     G   
Sbjct: 186 CLLFGDRSNKRIELIYLTTMADGYAGMRNYSWGAMTLAYLYGELTDACRPGHRALGGSVT 245

Query: 235 WLFIRPLEVWSYEYCI--YPGGPSGDSPVESRRIPRYLAHCHHTYASGEDPEY------- 285
            L +R L+ + Y + +  +PG  S D   +        A        GE   Y       
Sbjct: 246 LLTVRKLKFYIYAWFLAHFPGFFSVDLNTDYLENYPVAARWKLQKGHGEGITYRSLLDRI 305

Query: 286 ------WRSFLNDREVSDLSLTPW 303
                 WRS+   RE+ D     W
Sbjct: 306 QLDDVCWRSYEEHREIQDFEEVFW 329