Jatropha Genome Database

JcCA0080751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.10 + phase: 2 /pseudo/partial
         (473 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g099720.1 Exportin-1/Importin-beta-like chr07_pseudom...   311   3e-85
IMGA|Medtr7g099700.1 Contains similarity to transportin-SR from ...   152   3e-37
IMGA|Medtr7g099710.1 hypothetical protein chr07_pseudomolecule_I...    72   6e-13
IMGA|Medtr7g099690.1 importin-related, putative chr07_pseudomole...    56   3e-08

>IMGA|Medtr7g099720.1 Exportin-1/Importin-beta-like
           chr07_pseudomolecule_IMGAG_V3 22311546-22307089 E
           EGN_Mt090430 20090702
          Length = 398

 Score =  311 bits (798), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/256 (64%), Positives = 188/256 (73%), Gaps = 16/256 (6%)

Query: 37  QIQSEGYYLQLGVKDALLNALLVAAKRFSSGPPXXXXXXXXXXXXXXXXXXEHGKPIEQL 96
           +IQ+EGY LQ G KDALLNALL+A KRFSSGPP                   HG PIEQL
Sbjct: 70  KIQNEGYLLQSGPKDALLNALLLAVKRFSSGPPQLLTQICLALSALVLQVVAHGNPIEQL 129

Query: 97  FYSLRTLQNQDDSNMAVLEMLTVLPEEVVDTQNADGNISPAHRSQYGQE----------- 145
           FYSLR LQ++++ N+AVLEMLTVLPEEVVD Q  D  I+  H S Y QE           
Sbjct: 130 FYSLRNLQSEENGNIAVLEMLTVLPEEVVDNQRIDSKINSLHISHYTQEVLKLLLLICSS 189

Query: 146 -----LLSHTPTVLEFLLEQSQKTYDGGIQLHERNRKVLRCLLSWVRAGCFSEIPQGSLP 200
                LLSHTP VLEFLL QS+  +DG +Q +ERNRKVLRCLLSWVRAGCFSEI  G+L 
Sbjct: 190 KCRVSLLSHTPMVLEFLLRQSEINFDGAVQHNERNRKVLRCLLSWVRAGCFSEISPGTLA 249

Query: 201 THPLLNFVFNSLQVSSSFDLAIEVLVELASRHEGLPQVLLCRVHFLKEVLLLPALNNGDE 260
            HPLLNFVFNSLQ S+SFDLAIEVLVEL ++HEG+PQ+LLCRVH+LKEVLL PALN GD 
Sbjct: 250 AHPLLNFVFNSLQDSTSFDLAIEVLVELVTKHEGVPQILLCRVHYLKEVLLFPALNRGDM 309

Query: 261 KIISGLACLMSEIGQA 276
           K+I GLACL+SEIGQA
Sbjct: 310 KVIGGLACLLSEIGQA 325


>IMGA|Medtr7g099700.1 Contains similarity to transportin-SR from
           Homo sapiens gb|AF145029. ESTs gb|T46556, gb|AI993189,
           gb|T45501, gb|AA394463 come from this gene., putative
           chr07_pseudomolecule_IMGAG_V3 22305074-22302376 H
           EGN_Mt090430 20090702
          Length = 152

 Score =  152 bits (384), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/119 (63%), Positives = 94/119 (78%), Gaps = 1/119 (0%)

Query: 317 STLASYILSPDTESSKNGKHVEDVFFSVFSALLDALLLRAQVDESTFNDDSGMLDLPDGL 376
           STLASYIL+ D + +K  KH E +F  VFSALLD+LLLR+QVD+ST+ND+  ++DLPDGL
Sbjct: 29  STLASYILAIDVDGAKR-KHTEAIFSPVFSALLDSLLLRSQVDDSTYNDEGRVIDLPDGL 87

Query: 377 VQFRMNLAELLVDICQLLRPVTFVQKLFFGGWASVNIPVPWKEVEAKLFALNVVSEVVL 435
           V FRMNL ELLVDIC LL  + F QK+F GG AS N+ +PWKE+E+KLFALN VS + +
Sbjct: 88  VHFRMNLVELLVDICHLLGSMIFTQKIFIGGSASSNLSLPWKEMESKLFALNSVSTICI 146


>IMGA|Medtr7g099710.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 22306537-22305638 L
           EGN_Mt090430 20090702
          Length = 70

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)

Query: 277 APSLIVEASVEALALADSLLSCVAFPSEDWEIADSTLQF 315
           APSLIVEAS E+LA+ D+LLSCVAFPSEDWEIADSTLQF
Sbjct: 10  APSLIVEASAESLAVTDALLSCVAFPSEDWEIADSTLQF 48


>IMGA|Medtr7g099690.1 importin-related, putative
           chr07_pseudomolecule_IMGAG_V3 22301034-22296674 E
           EGN_Mt090430 20090702
          Length = 304

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 35/42 (83%)

Query: 431 SEVVLQEAQTFDFSVIIQLATMLSIRPSDKLKGFMCIVCQTV 472
           ++V++Q+ Q FDFS ++QL TMLS +PSD LKGF+CIV +++
Sbjct: 10  ADVIIQDGQHFDFSAVMQLVTMLSSKPSDGLKGFICIVYRSL 51