Jatropha Genome Database

JcCA0080721.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.40 - phase: 2 /pseudo/partial
         (176 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g083930.2 UAA transporter chr07_pseudomolecule_IMGAG_...   132   1e-31
IMGA|Medtr7g083930.3 UAA transporter chr07_pseudomolecule_IMGAG_...   132   1e-31
IMGA|Medtr7g083930.1 UAA transporter chr07_pseudomolecule_IMGAG_...   132   1e-31
IMGA|Medtr7g083930.5 UAA transporter chr07_pseudomolecule_IMGAG_...   131   1e-31
IMGA|Medtr7g083930.4 UAA transporter chr07_pseudomolecule_IMGAG_...   125   2e-29

>IMGA|Medtr7g083930.2 UAA transporter chr07_pseudomolecule_IMGAG_V3
           18054233-18058147 E EGN_Mt090430 20090702
          Length = 360

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 78/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA TSPNFS++GVVMI+GAL+
Sbjct: 120 VLPVMIMGAFIPGLRRKYPIHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALV 179

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFTMNP+TTQ        V+    G  FL P   F   + ++
Sbjct: 180 MDSFLGNLQEAIFTMNPDTTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 228


>IMGA|Medtr7g083930.3 UAA transporter chr07_pseudomolecule_IMGAG_V3
           18054233-18058147 E EGN_Mt090430 20090702
          Length = 336

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 78/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA TSPNFS++GVVMI+GAL+
Sbjct: 96  VLPVMIMGAFIPGLRRKYPIHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALV 155

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFTMNP+TTQ        V+    G  FL P   F   + ++
Sbjct: 156 MDSFLGNLQEAIFTMNPDTTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 204


>IMGA|Medtr7g083930.1 UAA transporter chr07_pseudomolecule_IMGAG_V3
           18054015-18058147 E EGN_Mt090430 20090702
          Length = 406

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 78/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA TSPNFS++GVVMI+GAL+
Sbjct: 166 VLPVMIMGAFIPGLRRKYPIHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALV 225

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFTMNP+TTQ        V+    G  FL P   F   + ++
Sbjct: 226 MDSFLGNLQEAIFTMNPDTTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 274


>IMGA|Medtr7g083930.5 UAA transporter chr07_pseudomolecule_IMGAG_V3
           18054233-18056473 E EGN_Mt090430 20090702
          Length = 234

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 68/81 (83%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA TSPNFS++GVVMI+GAL+
Sbjct: 120 VLPVMIMGAFIPGLRRKYPIHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALV 179

Query: 64  MDSFLGNLQEAIFTMNPETTQ 84
           MDSFLGNLQEAIFTMNP+TTQ
Sbjct: 180 MDSFLGNLQEAIFTMNPDTTQ 200


>IMGA|Medtr7g083930.4 UAA transporter chr07_pseudomolecule_IMGAG_V3
           18054233-18058147 E EGN_Mt090430 20090702
          Length = 237

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/109 (57%), Positives = 74/109 (67%), Gaps = 4/109 (3%)

Query: 8   MVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALIMDSF 67
           M+MGAFIPGLRRKYP HEYISA+           ADA TSPNFS++GVVMI+GAL+MDSF
Sbjct: 1   MIMGAFIPGLRRKYPIHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALVMDSF 60

Query: 68  LGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           LGNLQEAIFTMNP+TTQ        V+    G  FL P   F   + ++
Sbjct: 61  LGNLQEAIFTMNPDTTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 105