Jatropha Genome Database

JcCA0080721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.30 - phase: 0 /pseudo/partial
         (110 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g083940.1 Protein of unknown function DUF125, transme...    52   6e-08

>IMGA|Medtr7g083940.1 Protein of unknown function DUF125,
           transmembrane chr07_pseudomolecule_IMGAG_V3
           18059444-18061717 E EGN_Mt090430 20090702
          Length = 262

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 1   MGPGDFVSSSTEKDTAVKERAVTESEVANN-CRRQSALIKKYHSLGMDIKDAT 52
           MG GD VS+S+E+D  ++ER VTE +V N+    Q  L++ Y SLGM+  DAT
Sbjct: 82  MGFGDIVSASSERDVIIEERRVTEWDVLNSRGNEQRELVRYYQSLGMEYNDAT 134