Jatropha Genome Database

JcCA0080721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.20 + phase: 0 
         (575 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g084290.1 Nuclear protein SET; Calcium-binding EF-han...   399   e-111
IMGA|Medtr7g084300.1 Nuclear protein SET, putative chr07_pseudom...   261   1e-69
IMGA|Medtr7g084280.1 hypothetical protein chr07_pseudomolecule_I...    72   6e-13

>IMGA|Medtr7g084290.1 Nuclear protein SET; Calcium-binding EF-hand
           chr07_pseudomolecule_IMGAG_V3 18173599-18177267 H
           EGN_Mt090430 20090702
          Length = 287

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/304 (65%), Positives = 236/304 (77%), Gaps = 20/304 (6%)

Query: 62  MRVLQDPLIGPECRAMYEEGEVDDRFLMILFLMLERLRKNSSWKPYLDMLPSTFGNPLWF 121
           MRVLQDP +GPECRA++EEG+VDDR LM+L L +ERLRK+S WKPYLDMLP+TFGN LWF
Sbjct: 1   MRVLQDPFLGPECRALFEEGDVDDRLLMMLLLTVERLRKDSLWKPYLDMLPTTFGNTLWF 60

Query: 122 TDDELLELKGTTLYRATQLQKKNLLSLYDDKVKGLMKKLLILDGDSEGEVCFEDFLWANS 181
           +++EL EL+GTTLYRAT+LQKK+LL+LY+ KVK ++KKLL LD DSE EVCFEDFLWANS
Sbjct: 61  SEEELQELRGTTLYRATELQKKSLLNLYETKVKDIVKKLLTLDSDSEKEVCFEDFLWANS 120

Query: 182 LFWSRALNIPLPQSYVFPQIQEDQAINCSANNSESSHNDNSCEDLLNEKDEKRIKVPGVD 241
           +FWSRALN PLP+SYVFP++Q D   +C+    E+       +DL  E            
Sbjct: 121 VFWSRALNTPLPRSYVFPEMQ-DVHQSCTPKADENGSQVTKSDDLTKE------------ 167

Query: 242 NQVSGAISTPVQGDTLWVEGLVPGIDFCNHATNLKAAATWEVDGTGLVTGIPFSMYLLSA 301
                   + VQGDT+WVEGLVPGIDFCNH  +LK  ATWEVDGTGL TG+P SMYLLSA
Sbjct: 168 -----TTHSTVQGDTVWVEGLVPGIDFCNH--DLKPIATWEVDGTGLTTGVPVSMYLLSA 220

Query: 302 QQTAFQIGKEISISYGNKGNEELLYLYGFVIENNPDDYLMVHYPAEAIQDVPFSDSKMQL 361
            Q+  QI +EISISYGNKGNEELLYLYGFVI+ N DDYLMVHYP+EAI  + FS+SK QL
Sbjct: 221 AQSPLQIDREISISYGNKGNEELLYLYGFVIDGNTDDYLMVHYPSEAINTISFSESKSQL 280

Query: 362 LEAQ 365
           LE Q
Sbjct: 281 LEVQ 284


>IMGA|Medtr7g084300.1 Nuclear protein SET, putative
           chr07_pseudomolecule_IMGAG_V3 18178884-18180325 E
           EGN_Mt090430 20090702
          Length = 200

 Score =  261 bits (666), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 162/205 (79%), Gaps = 10/205 (4%)

Query: 369 LRCLLPKSLLDHGFFPVGTPNNDNNGKCKNDPVCNFSWSGQRKTPSYINKLVFPDDFLTS 428
           +RCLLPK+LLD+GFFP GT N+  N K  ++ VC +SWSGQRKTPSY++KLVFP+ F+ +
Sbjct: 1   MRCLLPKTLLDNGFFPSGTENSGENNK--SNKVCKYSWSGQRKTPSYVDKLVFPEKFMAT 58

Query: 429 LRTIAMQEDELYKVSSMLEELVGSDGERQPTDTEVRAAIWEACGDSGALQLLVDLLQAKM 488
           LRTIAMQEDEL+KVSSMLEELVG +GERQ +D +V++AIWE CGDSGALQLLVDLL  K+
Sbjct: 59  LRTIAMQEDELFKVSSMLEELVGPEGERQLSDIDVQSAIWEVCGDSGALQLLVDLLHVKL 118

Query: 489 VDLEENSRTEECDSELLERAQHVQNPEHQGRYESNLRRAEIGGLNELELMSRNKWASIVY 548
           +DLEE+S TEE D ELL++A  + + E   +  ++          E  LM+RNKW++IVY
Sbjct: 119 MDLEEHSGTEENDFELLKKALIIDSQEDSKQMANDSE--------ETTLMTRNKWSAIVY 170

Query: 549 RRGQKVLTRLFLKEAEHALQLSLSE 573
           RRGQK LTRLFLKEAEHAL LS+SE
Sbjct: 171 RRGQKQLTRLFLKEAEHALHLSMSE 195


>IMGA|Medtr7g084280.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 18172566-18173053 E
          EGN_Mt090430 20090702
          Length = 70

 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%)

Query: 6  EAKLEGFLQWLQANKVELRGCSIKFCGPDKGFGVFSSKDVSDG 48
          EAKLE FLQWLQAN VELRGC+IK+C   KGFG+F  KDVSDG
Sbjct: 5  EAKLETFLQWLQANGVELRGCNIKYCDSRKGFGIFCDKDVSDG 47