Jatropha Genome Database
- JcCA0080681.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0080681.20 - phase: 1 /TE
(1617 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 509 e-144
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 500 e-141
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 461 e-130
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 445 e-125
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 354 2e-97
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 267 3e-71
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 259 8e-69
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 213 4e-55
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 206 1e-52
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 197 5e-50
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 195 2e-49
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 181 2e-45
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 168 2e-41
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 165 2e-40
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 155 2e-37
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 152 1e-36
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 148 2e-35
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 144 3e-34
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 143 6e-34
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 134 5e-31
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 130 4e-30
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 130 5e-30
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 122 1e-27
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 103 6e-22
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 102 2e-21
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 102 2e-21
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 97 5e-20
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 95 3e-19
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 84 6e-16
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 82 2e-15
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 81 3e-15
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 78 3e-14
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 72 3e-12
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 69 2e-11
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 67 5e-11
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 67 5e-11
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 66 2e-10
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 64 5e-10
IMGA|Medtr5g046390.1 gag-pol polyprotein, related chr05_pseudomo... 64 7e-10
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule... 64 8e-10
IMGA|Medtr4g114890.1 gag-pol polyprotein, related chr04_pseudomo... 62 2e-09
IMGA|Medtr6g086670.1 gag-pol polyprotein, related chr06_pseudomo... 62 3e-09
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 61 4e-09
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 61 5e-09
IMGA|Medtr1g102740.1 gag-pol polyprotein, related chr01_pseudomo... 57 8e-08
IMGA|Medtr6g086660.1 gag-pol polyprotein, related chr06_pseudomo... 57 9e-08
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 56 1e-07
IMGA|Medtr8g081950.1 lectin receptor kinase, related chr08_pseud... 55 3e-07
IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu... 55 3e-07
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 55 3e-07
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 55 4e-07
IMGA|Medtr1g102780.1 gag-pol polyprotein, related chr01_pseudomo... 54 5e-07
IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related ... 52 2e-06
IMGA|Medtr3g089910.1 copia LTR rider, putative chr03_pseudomolec... 52 2e-06
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 51 4e-06
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 51 4e-06
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 51 5e-06
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 350/1062 (32%), Positives = 520/1062 (48%), Gaps = 99/1062 (9%)
Query: 284 EVWLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILT 343
+VW LDS + H+ WF F ++ + V N E G+IH H +
Sbjct: 379 DVWFLDSGANEHIVSSTHWFTSFHKINPKPVNLPNGTSVLVEYAGTIHFTPH----FYIE 434
Query: 344 DVRYVPSLTKNLISVGALESKGLTVIAKDGVMKVISGALVVMKGVRRRNNLYYYQGNIII 403
DV Y PS T NLIS+ KV S ++ L +I
Sbjct: 435 DVLYSPSFTLNLISI----------------FKVCSSLHCYASFHDKKCFLQDLHSQKMI 478
Query: 404 GSTATVVSSDDKELETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCTKGKQ 463
G V LGH K L +S L + C+ C KQ
Sbjct: 479 GLGEQVRG--------------LLGHVSNKRLNHMSH--LYPTLTVDNHATCDICQFAKQ 522
Query: 464 TRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKSKDEV 523
++ F T + + +H D+WGP S+ Y++T +DD+S W+ LKSK EV
Sbjct: 523 KKLSFPTSVSVASSKFELLHFDIWGPLAVTSIHNHRYFLTILDDYSIFFWIVLLKSKYEV 582
Query: 524 LGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQNGVA 583
+ L+ TQ K +R+DNG E+ ++F A +GIV H + TPQQNG
Sbjct: 583 SQHVKNFINLIHTQYHITPKVVRSDNGPEFLLNSF---YASKGIVHHKSCVETPQQNGRV 639
Query: 584 ERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPAND 643
ER ++ +L R +L + L +W+ A+ +A +INR+ S + K+P ++ G D
Sbjct: 640 ERKHQHILNVGRALLFQSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGT-IPD 698
Query: 644 YDSLRVFGSTAYYHVKES---KLDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSRDVTF 700
+ +VFGS Y +S KL RA+K +F+G + G KGY L +++I SR V F
Sbjct: 699 VQTFKVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGYKGYVLLDIHTREIHISRHVQF 758
Query: 701 DE---------STMLKKVTVEQSDGTPQQVEDTPKQVEF---------DRKIPVA----S 738
E ST+ SD PK D P + S
Sbjct: 759 HEHILPYPTNPSTITTTWDYFSSDSC-SASNPLPKSSTISPIIPPPFIDVDTPPSDDNHS 817
Query: 739 TEPAETPEVEGDSXXXXXXXXXXXXXXXSIALDRP--RRVIRKPARFDDM----VAYASP 792
P P V S S++ D + I ++++ A+A
Sbjct: 818 VSPIPQPPVIRKSSRITQPPTHLQDYVCSVSDDTSFVQYPISHYLSYNNLSSSHCAFALS 877
Query: 793 IADDSIPSTFNEAVKSSEEVKWRKAMEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKK 852
+ + P+T+ EA K W++AM+ E+ +L TW LVD P K I C+W+Y K
Sbjct: 878 LDSHTEPTTYAEASKFD---CWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIK 934
Query: 853 ---DGFPDRDSVHYKARLVAKGYAQTEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQ 909
DG +R YKARLVAKGY Q EG+DY + +SPV K +++R ++AL + + Q
Sbjct: 935 HHADGSIER----YKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQ 990
Query: 910 LDVKTAFLHGDLEEEIYMTQPEGFKVVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQR 969
LDV AFLHGDL+E++YM P+G K N VCKL KSLYGLKQ+ R+WY++ +
Sbjct: 991 LDVNNAFLHGDLQEDVYMIVPQGI-TPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVH 1049
Query: 970 QKYTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGE 1029
Y +S DH ++++K SF LL+YVDD++I + E +++K L+ E+KDLG+
Sbjct: 1050 HHYLQSTSDHSLFIKKTY-TSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQ 1108
Query: 1030 AKRILGMEITRDRKLGRLCLNQKQYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKN 1089
K LG+E+ + LC Q++Y +L G KP STP P KL A P
Sbjct: 1109 LKYFLGLEVAHSSQGISLC--QRKYCLDLLTDIGF-LAAKPASTPSDPSCKLHADGGPP- 1164
Query: 1090 DAEREYMSRVP-YANVVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYL 1148
S +P Y ++G L+Y + TRP I+ A +S++++ P ++H+ A ILRYL
Sbjct: 1165 ------FSDIPSYRRLIGRLIY-LTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYL 1217
Query: 1149 QNTVDVGLIFEQDKNNGQRIVGYCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTV 1208
+ + GL F +D + + GY D+D+AG LD RRS +G F L + +SWK+ Q TV
Sbjct: 1218 KKSPGQGLFFPRD--SSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTV 1275
Query: 1209 ALSITEAEYMAVTEAVKEAIWLQGLLDELGIRQNNI-VVHCDSQSAIHLAKNQVYHARTK 1267
+ S +EAEY A+ A E WL LL +L + + V++CD+QSA+H+A N V+H RTK
Sbjct: 1276 SRSSSEAEYRALGAATCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTK 1335
Query: 1268 HIDVRFHFVREILEERQVQLQKIQTAENPADMLTKVVTAVKF 1309
H+++ H VRE L+ ++L + +A+ AD TK + F
Sbjct: 1336 HLEIDCHLVREKLQACIMKLLPVTSADQLADFFTKPLLPQPF 1377
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 313/936 (33%), Positives = 479/936 (51%), Gaps = 87/936 (9%)
Query: 407 ATVVSSDDKELETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCTKGKQTRV 466
+++ + + + LWH RLGH + + +S L ++ D C+ C KQ +
Sbjct: 479 SSISCNSNNCIPVAALWHFRLGHLSNQRMIKMSH--LYPSIVHNNRDVCDICHFSKQKHL 536
Query: 467 KFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKSKDEVLGV 526
F + + + + +H D+WGP + +S+ G Y++T +DD SR +W+ LKSK EV
Sbjct: 537 PFSSSLSHASTNFELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLH 596
Query: 527 FLKWKKLVETQTGRCIKCLRTDNGGEYK-NDAFDKICADEGIVRHFTVRNTPQQNGVAER 585
+ ++ TQ K +R+DNG E+ ND + + GI+ + TPQQNG ER
Sbjct: 597 VKNFILMIRTQFHVTPKYVRSDNGPEFLLNDFY----SSHGIIHQKSCVETPQQNGRVER 652
Query: 586 MNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPANDYD 645
++ +L R +L + L FW+ AI +A LINR+P+ + ++P V
Sbjct: 653 KHQHILNVGRALLYQSKLPPSFWSYAILHAVFLINRVPTHVLHNQSPYHV---------- 702
Query: 646 SLRVFGSTAYYHVKESKLDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSRDVTFDESTM 705
+F + +SKL PRA+K++F+G +G KGY L+ +++I SR V F E+ +
Sbjct: 703 ---LFHKLPDIQLFKSKLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENIL 759
Query: 706 LKKVTVEQSDGTPQQVEDTPKQVEFDRKIPVASTEPAETPEVEGDSXXXXXXXXXXXXXX 765
P + +D P ++TE + +P S
Sbjct: 760 ------------PYTFTTSSTTPSWDYFSP-STTETSHSPN-NTPSTPSASLPHTQSSSP 805
Query: 766 XSIALDRPRRVIRK---PARFDDMV-------------------------AYASPIADDS 797
PR R P+ D V +Y + +
Sbjct: 806 SVPVSHLPRHSTRNKISPSYLQDYVCNSINSTTYPISHYLSHNKLSSHHSSYVLSLHTHN 865
Query: 798 IPSTFNEAVKSSEEVKWRKAMEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKK---DG 854
P T+ EA K W+KAM+ E+++L + TWN VD P K IGC+WV+ K DG
Sbjct: 866 EPKTYAEANKHE---CWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADG 922
Query: 855 FPDRDSVHYKARLVAKGYAQTEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKT 914
+R YKARLVAKGY Q EG+DY + FSPV K +++R+++AL + L QLDV
Sbjct: 923 SIER----YKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNN 978
Query: 915 AFLHGDLEEEIYMTQPEGFKVVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTR 974
AFLHGDL+E +YMT P G N VCKL KSLYGLKQ+ R+WY + + + +YT+
Sbjct: 979 AFLHGDLQENVYMTLPPGIS-AKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQ 1037
Query: 975 SKYDHCVYLRKLQDGSFIYLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRIL 1034
+ DH ++ +K S+ LL+YVDD+++A + +E + +K+ L+ F++KDLG+ K L
Sbjct: 1038 AHSDHSLFTKK-TGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFL 1096
Query: 1035 GMEITRDRKLGRLCLNQKQYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKNDAERE 1094
G+E+ + LC QK+Y +L G +KP STP P KL D
Sbjct: 1097 GLEVAHSQLGISLC--QKKYCLDLLADSGTIG-SKPASTPSDPSLKL------HKDGALP 1147
Query: 1095 YMSRVPYANVVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDV 1154
Y Y ++G L+Y + TRPDI+ +S+++ P H A +LRYL+N
Sbjct: 1148 YEDIPSYRRLIGRLLY-LNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGK 1206
Query: 1155 GLIFEQDKNNGQRIVGYCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITE 1214
GL F +N+ ++ GY D+D+AG LD RRS +G F L + +SW++ Q TV+ S +E
Sbjct: 1207 GLFFP--RNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSE 1264
Query: 1215 AEYMAVTEAVKEAIWLQGLLDELGIRQNNI-VVHCDSQSAIHLAKNQVYHARTKHIDVRF 1273
AEY A+ A E WL LL +L + + V+ CD+QSA+H+A N V+H RTKH+++
Sbjct: 1265 AEYRALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDC 1324
Query: 1274 HFVREILEERQVQLQKIQTAENPADMLTKVVTAVKF 1309
H VRE L ++L + + E AD TK + F
Sbjct: 1325 HIVREKLHSGILKLLPVSSKEQVADFFTKSLHPQPF 1360
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 461 bits (1187), Expect = e-130, Method: Compositional matrix adjust.
Identities = 348/1112 (31%), Positives = 541/1112 (48%), Gaps = 142/1112 (12%)
Query: 268 IMASIDNSSANLTSSGEVWLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGI 327
I S +SS N WL+DS + H+ +F F ++ V N
Sbjct: 372 IPVSFPSSSTN---KPPFWLIDSGANEHICCDITFFSSFYRIKPVNVSLPN--------- 419
Query: 328 GSIHLKNHDGSIRI-----LTDVRYVPSLTKNLISVGALESKGLTVIAKDGVMKVI---S 379
G+I L ++ G++ L V Y P+ NLISV L + LT + K +
Sbjct: 420 GTIVLVHYAGTVSFNSKFYLNHVLYSPNFLLNLISVAKL-CESLTCFFHFSLDKCLIQDQ 478
Query: 380 GALVVMKGVRRRNNLYYY-----QGNIIIGSTAT-----VVSSDDKELET----TRLWHR 425
+L ++ ++ + LY + N+ + S+ T V+ S ++ T LWH
Sbjct: 479 QSLKMIGLAKQMDGLYKFYPSSSSCNLELFSSPTKYCNVVLPSSCNKIPTFVPSDTLWHF 538
Query: 426 RLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSD 485
RLGH ++ L+ LS L ++K C+ C K + F +
Sbjct: 539 RLGHLSKQRLQTLS--LLYPSIKIDNKAICDLCHFAKHKHLPFTS--------------- 581
Query: 486 VWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCL 545
+D SR +W+ LK+K EV + +++ K +
Sbjct: 582 --------------------NDHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTTPKFI 621
Query: 546 RTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDK 605
RTDNG E+ + + GI+ + TPQQNG ER ++ +L R +L + L
Sbjct: 622 RTDNGPEF---MLSTLYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPP 678
Query: 606 KFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGSTAYYHVKES---K 662
+W AI +A LINR+P+ + ++P V D +VFG Y +S K
Sbjct: 679 AYWCYAIQHAVFLINRVPTPTLNNQSPYFVL-HHKLPDSSLFKVFGCLCYASTLQSHTTK 737
Query: 663 LDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSRDVTFDESTMLKKVTVEQSDGTPQQVE 722
L RA+K+IF+G +G KG+ L+ S++I SR VTF E+ + T S +P
Sbjct: 738 LKHRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHENFLPYPHT--SSSTSPDW-- 793
Query: 723 DTPKQVEFDRKIPVASTEPAETPEVEGDSXXXXXXXXXXXXXXXSIALDRPR---RVIRK 779
+ + PVA P+ P + D I PR R +
Sbjct: 794 ---QYFSYFHPTPVAPNLPS--PPIIDDIIAPDHPSPDPTPPTSPILPIVPRHSTRNVTA 848
Query: 780 PARFDDMV-----AYASPIADD-------SIPSTFNEAVKSSEEVK----------WRKA 817
P+ D + A+ PI + S F ++ + E K W+ A
Sbjct: 849 PSYLQDYICNNIHAFTYPITHSLSHHHLSNSRSFFVMSLHTQPEPKSYAEASKLDCWKHA 908
Query: 818 MEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKK---DGFPDRDSVHYKARLVAKGYAQ 874
M+ E+++L K TW LVD P K IGC+W+Y K DG +R YKARLVAKGY Q
Sbjct: 909 MQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVER----YKARLVAKGYNQ 964
Query: 875 TEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLEEEIYMTQPEGFK 934
EG+DY + +SPV K +++R+++AL + + L QLDV AFLHGDL+E++YM P G K
Sbjct: 965 IEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVPPGIK 1024
Query: 935 VVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTRSKYDHCVYLRKLQDGSFIYL 994
K N VCKL KSLYGLKQ+ R+WY++ + Q YT++ D+ ++++K SF L
Sbjct: 1025 -SSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDYSLFVKK-TSTSFTVL 1082
Query: 995 LLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKLGRLCLNQKQY 1054
L+YVDD+++A + E ++K+ L+ F++KDLG+ K LG+E+ KLG + L Q++Y
Sbjct: 1083 LVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEVAHS-KLG-ISLCQRKY 1140
Query: 1055 LRKILKRFGMDNKTKPVSTPLAPHFKLSA-AQSPKNDAEREYMSRVPYA-NVVGSLMYAM 1112
+L G +KP+STP KL + SP D VP +VG L+Y +
Sbjct: 1141 CLDLLADIG-SLGSKPISTPSDSSIKLHLDSSSPFED--------VPACRRLVGRLLY-L 1190
Query: 1113 VCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVGLIFEQDKNNGQRIVGYC 1172
TRPDI+ +S+++ P + H A +L+YL++ GL F +++ + G+
Sbjct: 1191 NNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFP--RSSSLNLQGFS 1248
Query: 1173 DSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAVTEAVKEAIWLQG 1232
D+D+AG +D RRS +G F L + +SW++ Q TV+ S +EAEY A+ A E W+
Sbjct: 1249 DADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILY 1308
Query: 1233 LLDELGIRQNNI-VVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVREILEERQVQLQKIQ 1291
LL +L + V++CD+QSAIH+A N V+H RTKH+++ H +R+ L+ ++L +
Sbjct: 1309 LLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVS 1368
Query: 1292 TAENPADMLTKVVTAVKFKHCLD---LINIVK 1320
+ + AD TK + F L LINI +
Sbjct: 1369 SQDQVADFFTKALLPKPFNILLSKLGLINIYQ 1400
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 282/812 (34%), Positives = 427/812 (52%), Gaps = 63/812 (7%)
Query: 543 KCLRTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAG 602
K +R DNG E+ F A GI+ H + TPQQNG ER ++ +L VR +L +
Sbjct: 459 KTIRIDNGPEFMLKDF---YASHGIIHHKSCVETPQQNGRVERKHQHILNVVRALLFQSK 515
Query: 603 LDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGSTAYYHVKE-- 660
L FW+ A+ +A LINR+ + + ++P V + D +VFG Y +
Sbjct: 516 LPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNK-LPSLDLFKVFGCLCYASTLQNH 574
Query: 661 -SKLDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSRDVTFDESTMLKKVTVEQSDGTPQ 719
+KL RA+K+IF+G +G KGY L+ S++I SR V+F E+ + + T
Sbjct: 575 RTKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPYH---KNPSSTTA 631
Query: 720 QVEDTPKQVEFDRKIPVASTEPAETPEVEGD---SXXXXXXXXXXXXXXXSIALDRPRRV 776
P + P V D S ++ R RV
Sbjct: 632 DWNYYPSSQSYSHDQSPNVNHQVHIPAVIDDILPSTHVLPPSPPYDSPPIHVSPRRSNRV 691
Query: 777 IRKPARFDDMV-------------------------AYASPIADDSIPSTFNEAVKSSEE 811
P D V ++ S + P+T+ EA S+
Sbjct: 692 RTAPLHLQDYVCNSVHSTTYPLSHYINYNNISTNHASFISSLQTTPEPTTYVEA---SKH 748
Query: 812 VKWRKAMEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKK---DGFPDRDSVHYKARLV 868
W KAM+ E+ +L K TW++VD P K IGC+W+Y K DG +R YKARLV
Sbjct: 749 DCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIER----YKARLV 804
Query: 869 AKGYAQTEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLEEEIYMT 928
AKGY Q EG+DY E +SPV K +++R+++AL + + L QLDV AFLHG+L+E++YM
Sbjct: 805 AKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQEDVYMI 864
Query: 929 QPEGFKVVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTRSKYDHCVYLRKLQD 988
P G + K + VCKL+KSLYGLKQ+ RQWY++ + +Q Y ++ DH ++++K D
Sbjct: 865 LPPGIN-IAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSD 923
Query: 989 GSFIYLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKLGRLC 1048
SF LL+YVDD+++A + E +N+K+ L+ F++KDLG+ K LG+E+ KLG +
Sbjct: 924 -SFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHS-KLG-IS 980
Query: 1049 LNQKQYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKNDAEREYMSRVPYANVVGSL 1108
L Q++Y +L G +KP+STP P KL +D Y Y +VG L
Sbjct: 981 LYQRKYCLDLLHDSGHIG-SKPISTPSDPSTKL------HHDTSTPYDDIPAYRRLVGRL 1033
Query: 1109 MYAMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVGLIFEQDKNNGQRI 1168
+Y + TRPDI+ +S+++ +P H A LRYL++ GL F +N+ +
Sbjct: 1034 LY-LNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFP--RNSSLTL 1090
Query: 1169 VGYCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAVTEAVKEAI 1228
G+ D+D+AG LD R+S TG F L + +SW++ Q+TV+ S +EAEY A+ A E
Sbjct: 1091 QGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQ 1150
Query: 1229 WLQGLLDELGIR-QNNIVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVREILEERQVQL 1287
WL LL++L I V++CD+QSA+H+A N V+H RTKH+++ H VRE L+ ++L
Sbjct: 1151 WLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKL 1210
Query: 1288 QKIQTAENPADMLTKVVTAVKFKHCLDLINIV 1319
+ + + AD TK + F L + ++
Sbjct: 1211 LPVSSQDQIADFFTKALLPKTFSLLLSKLGLI 1242
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 354 bits (908), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 236/771 (30%), Positives = 359/771 (46%), Gaps = 156/771 (20%)
Query: 461 GKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKSK 520
+Q+R+ F H T GI + +H D+WGP T + Y++T +DDFS+ W L K
Sbjct: 2 ARQSRLPFPPKTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCK 61
Query: 521 DEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQN 580
V + +VE Q +K +R+DNG E+ ++ +GI+ + TPQQN
Sbjct: 62 SNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQN 121
Query: 581 GVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEP 640
GV ER ++ +LE R +L + L K+W+E
Sbjct: 122 GVVERKHKFILETARALLFQSKLPVKYWSE------------------------------ 151
Query: 641 ANDYDSLRVFGSTAYYHVKESKLDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSRDVTF 700
+K DP+ +F+G KGY++ ++KI SRDV F
Sbjct: 152 -----------------FHRTKFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRDVIF 194
Query: 701 DES----TMLKKVT------------------VEQSDGTPQQVEDTPKQVEFDRKIPVAS 738
E+ M K T + D + ++ +P + P S
Sbjct: 195 HETIFPFAMSKDPTHFPKFPFHCVSLHDYPTSYDDQDYSSKETTTSPTHI-----TPENS 249
Query: 739 TEPAE-TPEVEGDSXXXXXXXXXXXXXXXSIA-LDRPRRVIRKPARFDDMVA-------- 788
T P TPE SI L R +R+ + P D V
Sbjct: 250 TSPTHITPE-----------------NSTSIPQLRRSQRLHKTPTYLTDYVHNVPSSTVS 292
Query: 789 --------------------YASP-------------IADDSIPSTFNEAVKSSEEVKWR 815
Y SP I+ D P+++ EA S + W+
Sbjct: 293 NSQPPQPHSLPLNALFTLKHYVSPDVFSFDSQSFIMNISHDCEPNSYEEA---SMDPAWQ 349
Query: 816 KAMEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYA---KKDGFPDRDSVHYKARLVAKGY 872
KAM E +L+ N TW L + PK KK++GC+WVY K DG +R YKARLV KGY
Sbjct: 350 KAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVER----YKARLVVKGY 405
Query: 873 AQTEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLEEEIYMTQPEG 932
Q GIDY E FSPVVK +++R L+ A+ + QLDV AFLHGDL EE+YM P G
Sbjct: 406 TQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPG 465
Query: 933 FKVVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTRSKYDHCVYLRKLQDGSFI 992
K+ +VCKL KSLYGLKQ+ RQWY++ + + + Y S +D+ ++ +K + S +
Sbjct: 466 LATPHKD-LVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKK-RGASNV 523
Query: 993 YLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKLGRLCLNQK 1052
+L +YVDD+L+ + EI+ LK L+ +F++KDLG LG+E+ K + ++Q+
Sbjct: 524 FLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVL--YKDDGILVSQR 581
Query: 1053 QYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKNDAEREYMSRVPYANVVGSLMYAM 1112
+++ +LK F D+ P+S+PL P+ KL + + D + Y Y ++G L + +
Sbjct: 582 KFVLDLLKEFNCDH-MAPLSSPLDPNIKLRSHEGKVLD-DPTY-----YRKLIGKLNF-L 633
Query: 1113 VCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVGLIFEQDKN 1163
TR D++ V ++S+YM DP + H A +LRYL+ +G+ N
Sbjct: 634 THTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAAN 684
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 199/711 (27%), Positives = 318/711 (44%), Gaps = 84/711 (11%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILTDV 345
W++DS + H+ + F F +++ +V N + G++H + LT V
Sbjct: 351 WIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAGNVHFTPYLH----LTHV 406
Query: 346 RYVPSLTKNLISVGAL---ESKGLTVIAKDGVMKVISGALVVMKGVR------------- 389
Y P NLISV + S + ++ V++ ++ ++ G +
Sbjct: 407 LYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKLSMHFVN 466
Query: 390 ---RRNNLYYYQGNIIIGSTATVVSSD---------DKELETTRLWHRRLGHAGEKSLKI 437
+ +N + N + S + +S + + LWH RLGH + L
Sbjct: 467 QQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHLSNQRLST 526
Query: 438 LSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSG 497
+S L ++ C+ C + ++ F + +H D+WGP + G
Sbjct: 527 MSR--LYPSIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLHFDIWGPLAINYVHG 584
Query: 498 KHYYVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDA 557
Y++T +DD +R +W+ LKSK EV + L+E Q K +RTDNG E+
Sbjct: 585 HKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNGSEF---L 641
Query: 558 FDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACH 617
A +GI+ + TPQQNG ER ++ +L R +L + L FW+ A +A
Sbjct: 642 LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVF 701
Query: 618 LINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGSTAYYHVKES---KLDPRAKKAIFMG 674
LINR+P+ + ++P ++ + + D + +VFG Y +S KL+ RA+K++F+G
Sbjct: 702 LINRVPTLVLQNQSPYQL-LYDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSVFLG 760
Query: 675 ISTGVKGYRLWCTESKKIIFSRDVTFDESTMLKKVTVEQSDGTPQQVEDTPKQVEFDRKI 734
+G KG L+ +++I SR V F E + K S+ +PQ D F +
Sbjct: 761 YKSGFKGSVLYDLHTREIFISRHVVFHECVLPYK-----SNSSPQS-HDWEYFTSFSTPL 814
Query: 735 PVASTEPAETPEVEGDSXXXXXXXXXXXXXXXSIALDRPRRVIRK----PARFDDMV-AY 789
+ S D I P R + P+ D + A
Sbjct: 815 DLPSGTDTSPHSAITDIVPYTSPTPTSTSSIIDIPPPLPTRHSSRNKTPPSYLKDFICAN 874
Query: 790 ASPIADDSIPSTFN----------------------EAVKSSEEVK---WRKAMEDEMKS 824
S + +S+ S N E +E K WR+AM+ E+ +
Sbjct: 875 KSSASVNSLHSISNFVSYHNISNSHSHFILSLHAHTEPKSYTEANKFECWRQAMQVELTA 934
Query: 825 LYKNQTWNLVDPPKGKKAIGCKWVYAKK---DGFPDRDSVHYKARLVAKGYAQTEGIDYN 881
L TW ++D P K IGC+W+Y K DG +R YKARLVAKGY Q EG+DY
Sbjct: 935 LENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIER----YKARLVAKGYNQVEGLDYF 990
Query: 882 EVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLEEEIYMTQPEG 932
+ +SPV KH++IR++LAL + + L QLDV AFLHGDL+E++YM P G
Sbjct: 991 DTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYMDIPPG 1041
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 259 bits (662), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 223/820 (27%), Positives = 352/820 (42%), Gaps = 150/820 (18%)
Query: 533 LVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLE 592
++E Q K +RTDNG E+ + A +GI+ + TPQQNG ER ++ +L
Sbjct: 1 MIENQFHVTPKIIRTDNGSEF---LLHEFYASKGILHQRSCVETPQQNGRVERKHQHILN 57
Query: 593 KVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGS 652
R +L + L FW+ A +A LINR+P+ + +P + P D + +VFG
Sbjct: 58 IGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPP-DITTFKVFGC 116
Query: 653 TAYYHVKES---KLDPRAKKAIFMGISTGVKG---YRLWCTE---SKKIIF--------- 694
Y +S KL+ RA+K++F+G G KG Y L E S+ ++F
Sbjct: 117 LCYASSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPYKS 176
Query: 695 ---SRDVTFDESTMLKKVTVEQSDGTPQQVEDTPKQVEFDRKIPVAS--TEPAETPEVEG 749
S+ + ++ T + + + S T K V + + +P+ P +
Sbjct: 177 ISSSQSLDWEYFTSISSLLIIPSVSDISHSPSTTKYVPHTQPTTTTTPTNDPSRPPPIRC 236
Query: 750 DSXXXXXXXXXXXXXXXSIALDRPRRVIRKPARFDDMVAY---ASP-------IADDSIP 799
S I + + + V+Y ++P + + P
Sbjct: 237 SSRNKISPSYLKDY----ICPHKSSTSVNNLYSISNYVSYHNISNPHSHFILSLHAHNEP 292
Query: 800 STFNEAVKSSEEVKWRKAMEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKKDGFPDRD 859
T+ EA K WR+AM+ E+ +L TW ++D P K IGC+W+Y K D
Sbjct: 293 KTYTEANKFE---CWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHN-ADDT 348
Query: 860 SVHYKARLVAKGYAQTEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHG 919
YKARLVAKG YN+V
Sbjct: 349 IERYKARLVAKG--------YNQV------------------------------------ 364
Query: 920 DLEEEIYMTQPEGFKVVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTRSKYDH 979
EG + V K ++ + R+WY++ + Y ++ DH
Sbjct: 365 -----------EGLDYFDTYSPVAKHTT----IRLASRKWYEKLASLLVNHGYKQASADH 409
Query: 980 CVYLRKLQDGSFIYLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEIT 1039
+++ K F LL+YVDD+++A + E +KN L+ F++KDLG+ K LG+E+
Sbjct: 410 SLFI-KHSTTQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEVA 468
Query: 1040 RDRKLGRLCLNQKQYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKNDAEREYMSRV 1099
KLG + L Q++Y +L G+ + +KPV+TP P KL SP Y
Sbjct: 469 HS-KLG-ISLCQRKYGLDLLSDTGLLD-SKPVATPSDPSIKLYHDDSPL------YTDIP 519
Query: 1100 PYANVVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVGLIFE 1159
Y +VG L+Y + TRPDI+ +S+++ P + H+ A +LRYL+ GL F
Sbjct: 520 AYRRLVGRLLY-LNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFP 578
Query: 1160 QDKNNGQRIVGYCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMA 1219
+++ I GY D+D+AG D RRS +G F L + +SW++ Q TV+ S +EAEY A
Sbjct: 579 --RSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRA 636
Query: 1220 VTEAVKEAIWLQGLLDELGIRQNNIVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVREI 1279
+ A N V+H RTKH+++ H VRE
Sbjct: 637 LGAAT---------------------------------SNPVFHERTKHLEIDCHIVREK 663
Query: 1280 LEERQVQLQKIQTAENPADMLTKVVTAVKFKHCLDLINIV 1319
L ++L I + AD TK + F L + +V
Sbjct: 664 LAAGIMKLLPISSKNQLADCFTKSILPQPFNSLLFKLGLV 703
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 201/693 (29%), Positives = 303/693 (43%), Gaps = 149/693 (21%)
Query: 594 VRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGST 653
VR ML + +FW A++ A +++NR P+ + K P E+W + +L+VFGS
Sbjct: 2 VRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPS-ISNLKVFGSI 60
Query: 654 AYYHVKES---KLDPRAKKAIFMGI-STGVKGYRLWCTESKKIIFSRDVTFDESTMLKKV 709
Y HV +S KL+ + + I +G +TG YRL SKKI +RDV E
Sbjct: 61 FYKHVPDSRRKKLEDKTEAMILVGYHNTG--AYRLLDLHSKKISITRDVKVLEE------ 112
Query: 710 TVEQSDGTPQQVEDTPKQVEFDRKIPVASTEPAETPEVEGDSXXXXXXXXXXXXXXXSIA 769
E D + K V + K S E EV +
Sbjct: 113 --EYWDWNSNECSVYEKNVIIENK--KESDELLTNEEVISEEVSYEE----------PTT 158
Query: 770 LDRPRRVIRKPARFDDMVAYASPIADDSIPSTFNEAVKSSEEVKWRKAMEDEMKSLYKNQ 829
+ RP+R + R D DD I S E V + V + + +KS KNQ
Sbjct: 159 IARPQRNKQMLRRLQD----CQVTGDDEIGSD-GELVHFAMLVDTKPLYK--LKSSGKNQ 211
Query: 830 TWNLVDPPKGKKAIGCKWVYAKKDGFPDRDSVHYKARLVAKGYAQTEGIDYNEVFSPVVK 889
TW L+ GKKAI KWV+ K P+ V +KARLVA
Sbjct: 212 TWELIKLTDGKKAIDVKWVFKLKLN-PEGKIVKHKARLVA-------------------- 250
Query: 890 HSSIRILLALVAQFDLELVQLDVKTAFLHGDLEEEIYMTQPEGFKVVGKENMVCKLEKSL 949
R+ L + EGF +V KL K+L
Sbjct: 251 ----RVFL-------------------------------KKEGFDYT---EVVFKLNKAL 272
Query: 950 YGLKQSPRQWYKRFDKFMQRQKYTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASKNKQ 1009
YGLKQ+PR W KR +KF Q + + +H VY++ + S +
Sbjct: 273 YGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVKGSEGTSLL----------------- 315
Query: 1010 EIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKLGRLCLNQKQYLRKILKRFGMDNKTK 1069
I+ +EI R K L LNQ +Y +I K+F M +
Sbjct: 316 -----------------------IICLEILRTTK--GLILNQTKYDTEIQKKFNMLDFNS 350
Query: 1070 PVSTPLAPHFKLSAAQSPKNDAEREYMSRVP--YANVVGSLMYAMVCTRPDISQAVGVVS 1127
++ A + N+ + E P ++G L Y + +R DIS +VG+VS
Sbjct: 351 SITLAYANNI---------NEVKEEDKGVDPTILRRLIGLLRY-LCQSRLDISYSVGIVS 400
Query: 1128 RYMHDPGKEHWQAVKWILRYLQNTVDVGLIFEQDKNNGQ-RIVGYCDSDYAGDLDKRRST 1186
++M +P K H+ A K I+RY+ T+ G++F + + Q ++ Y D+D+ D RR T
Sbjct: 401 KFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRT 460
Query: 1187 TGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAVTEAVKEAIWLQGLLDELGIR-QNNIV 1245
T ++F L AP+SW S Q VALS E EY+ + A +A WLQ +L++ I+ + I
Sbjct: 461 TSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIK 520
Query: 1246 VHCDSQSAIHLAKNQVYHARTKHIDVRFHFVRE 1278
+ D++ AI+LAKN + H ++KHI+ +FH++R+
Sbjct: 521 LLIDNKYAINLAKNHISHGKSKHIETKFHYLRD 553
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 177/306 (57%), Gaps = 19/306 (6%)
Query: 818 MEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKK---DGFPDRDSVHYKARLVAKGYAQ 874
M+ E+ +L + TW +VD P K IGC+W++ K DG +R YKARLVAKGY Q
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIER----YKARLVAKGYNQ 56
Query: 875 TEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLEEEIYMTQPEGFK 934
EG+DY + +SPV K +++R ++AL + L Q DV AFLHG+L+E++YM P G
Sbjct: 57 IEGLDYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVP 116
Query: 935 VVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTRSKYDHCVYLRKLQDGSFIYL 994
++ VCKL KSLYGL+Q+ +WY++ + Y ++ D ++++ SF L
Sbjct: 117 -HSHQDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTH-SSFTIL 174
Query: 995 LLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKLGRLCLNQKQY 1054
L+YVDD+++A E +K L+ F++KD+G+ K LG+E+ + LC Q++Y
Sbjct: 175 LVYVDDVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLC--QRKY 232
Query: 1055 LRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKNDAEREYMSRVPYANVVGSLMYAMVC 1114
+L+ G+ +KP++TP P KL ND+ + Y ++G L+Y +
Sbjct: 233 CLDLLEDSGL-TGSKPMNTPSDPSIKL------HNDSAPSFPDIPAYRRLIGRLLY-LNT 284
Query: 1115 TRPDIS 1120
TRPDI+
Sbjct: 285 TRPDIT 290
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 169/618 (27%), Positives = 256/618 (41%), Gaps = 94/618 (15%)
Query: 276 SANLTSSGEVWLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNH 335
S ++ S +VW LDS + H+ + WF F ++ V N GS L +
Sbjct: 369 SCSINSKSDVWFLDSGANEHIVNNTHWFTSFHKINPRPVNLPN---------GSSVLVEY 419
Query: 336 DGSIRI-----LTDVRYVPSLTKNLISVGALESKGLTVIAKDGVMKVISGALVVMKGVRR 390
G+IR L +V Y PS T NLIS+ V + + +++ +
Sbjct: 420 AGTIRFTPQFYLENVLYSPSFTLNLISI-------FKVCSSLNCYAIFHNKQCLLQDLHS 472
Query: 391 RNNLYYYQGNIIIGSTATVVSSDDKELETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTC 450
Q I +G V S + LWH RLGH K L +S L +
Sbjct: 473 -------QKMIGLGEQFGVYYS------YSALWHFRLGHVSPKRLIHMSQ--LYPTLTVD 517
Query: 451 KLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSR 510
C+ C KQ ++ F I + +H D+WGP + S+ Y++T +DD+SR
Sbjct: 518 VHATCDICHFAKQKKLPFSNSISVASIKFELLHFDIWGPLSITSIHNHRYFLTILDDYSR 577
Query: 511 RVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRH 570
VW+ LKSK EV + L++TQ K +R+DNG E+ +F A +GIV H
Sbjct: 578 YVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFLLHSF---YASKGIVHH 634
Query: 571 FTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGK 630
+ TPQQNG ER ++ +L R +L + L +W+ A+ +A +INR+ S + K
Sbjct: 635 RSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYALLHATFIINRVTSPTLHNK 694
Query: 631 TPIEVWCGE-PANDYDSLRVFGSTAY---YHVKESKLDPRAKKAIFMGISTGVKGYRLWC 686
+P ++ PA +VFGS Y H +KL RA+K++F+G + G KGY L
Sbjct: 695 SPYQLLHDTIPAEHI--FKVFGSLCYSTTLHSHRTKLSARARKSVFLGYTVGFKGYVLLD 752
Query: 687 TESKKIIFSRDVTFDESTMLKKVTVEQSDGTPQQVED---TPKQVEFDRKIPVASTEPA- 742
+++I SR V F E + T + + D I + S+ P
Sbjct: 753 IHTREIHISRHVQFYEHILPYPATSSSITTAWEYFSSDTCSSSNPNSDTPITLPSSPPPF 812
Query: 743 ---ETPEVEGDSXXXXXXXXXXXXXXXSIALDRPRRVIRKPARFDDMV---AYASPIADD 796
+ P + + SI R P D V + AS ++D+
Sbjct: 813 IDVDIPPTDHEHPISSIPSPSPPIIRKSI------RNTHPPTHLQDYVCNTSTASVLSDN 866
Query: 797 SI------------------------------PSTFNEAVKSSEEVKWRKAMEDEMKSLY 826
S P+T+ EA K W +AM+ E+ +L
Sbjct: 867 SFVHHPISHYYSYNNLSSSHCAFAMSLDSHTEPTTYAEASKFD---CWNQAMKVELSALE 923
Query: 827 KNQTWNLVDPPKGKKAIG 844
TW LVD P K IG
Sbjct: 924 NTGTWRLVDLPPNVKPIG 941
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 179/319 (56%), Gaps = 29/319 (9%)
Query: 994 LLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKLGRLCLNQKQ 1053
+L+YVDD++IA + I N K L Q F MKDLG K LG+E+ R +C Q++
Sbjct: 3 VLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMC--QRK 60
Query: 1054 YLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPK-NDAEREYMSRVPYANVVGSLMYAM 1112
Y IL M + KP + P+ + KL + P +D R Y ++ L+Y
Sbjct: 61 YTLDILDECKMLD-CKPSTFPMEQNQKLVLDKGPTCSDPSR-------YRRLISRLIYLT 112
Query: 1113 VCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVGLIFEQDKNNGQRIVGYC 1172
+ P+I+ +V +++ +LRYL+++ G+I K N ++V YC
Sbjct: 113 I-MHPEITYSVHILTMR--------------VLRYLKSSPGQGIILP--KENDLQLVAYC 155
Query: 1173 DSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAVTEAVKEAIWLQG 1232
DSD+A RRST+GY+ L AP+SWK+ QSTV+ S +EAEY A+ +AV E IWL+
Sbjct: 156 DSDWASCPLTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRS 215
Query: 1233 LLDELGIRQNN-IVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVREILEERQVQLQKIQ 1291
LL L + ++ V+ CD+Q+A+HLA N VYH RTKHI+V HF+R L+E + +
Sbjct: 216 LLSSLQVHYDSPTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVP 275
Query: 1292 TAENPADMLTKVVTAVKFK 1310
T + AD+ TK + A +F+
Sbjct: 276 TKKQQADIFTKALGAKQFQ 294
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 194/402 (48%), Gaps = 21/402 (5%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILTDV 345
W++D+ +HH +WF + ++E V N IG + L D SI +V
Sbjct: 398 WIVDTGATHHTCYDLNWFTSYSKIETINVNLPNGSVIEACYIGQVKLSK-DLSI---DNV 453
Query: 346 RYVPSLTKNLISVGALESKGLTVIAKDGVMKVIS--GALVVMKGVRRRNNLYYYQGN--- 400
Y+P NLISV L + + + + +I L + + ++ LYY + +
Sbjct: 454 LYLPKFAVNLISVSKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLETDERN 513
Query: 401 -IIIGSTATVVSSDDKELETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCT 459
+ + + + V K + LWH RLGH +++ + V C+ C
Sbjct: 514 KVSVSNISAQVELHQKHVPDGVLWHLRLGHLSHD--RMICMNKMYSYVPVSPHTACDVCQ 571
Query: 460 KGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKS 519
+Q + F N K D VH D+WGP +T S+ G Y++T +DD +R VW+ LK+
Sbjct: 572 MCRQKILPFPISSRNAKTAFDLVHFDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLKN 631
Query: 520 KDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYK-NDAFDKICADEGIVRHFTVRNTPQ 578
K E + +VE Q R IK +R+DNG E+ + +DK +GI+ + TPQ
Sbjct: 632 KSEASYQVKNFVSMVERQFERKIKMIRSDNGPEFMLREFYDK----KGIIHQRSCVYTPQ 687
Query: 579 QNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCG 638
QNG ER ++ +L R ++ + L K FW+ A+ +A +LINR+P+ + K+ EV
Sbjct: 688 QNGRVERRHQHILNISRALMFQSKLPKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLYN 747
Query: 639 EPANDYDSLRVFGSTAYYH---VKESKLDPRAKKAIFMGIST 677
E D SL+VFG +Y V K DP+A+K F+G +
Sbjct: 748 E-VPDLSSLKVFGCLSYASTLPVNRYKFDPKARKCAFLGFKS 788
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/538 (24%), Positives = 234/538 (43%), Gaps = 47/538 (8%)
Query: 281 SSGEVWLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIR 340
SS W++DS S H+ +F + + + N G++ + G++
Sbjct: 387 SSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPN---------GNMAIAKFSGTVN 437
Query: 341 -----ILTDVRYVPSLTKNLISVGALESKGLTVIAKD---------------GVMKVISG 380
I +V YV NL+SV L ++ D G+ ++I G
Sbjct: 438 FSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEG 497
Query: 381 ALVVMKGVRRRNNLYYYQGNIIIGSTATVVSSDDKELETTRLWHRRLGHAGEKSLKILSD 440
+ G + + + +Q I + + SS L LWH RLGH ++L
Sbjct: 498 LYFLNLGSQVFSQ-FNHQPVIALSQS----SSSTTFLPQEALWHFRLGHLSND--RLLRM 550
Query: 441 QGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHY 500
Q +K C+ C + ++ F ++ + +H D+WGP +T S+ G Y
Sbjct: 551 QQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKY 610
Query: 501 YVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDK 560
++T +DD+SR W+ K+K EV + +E Q +K +RTDNG E+ F
Sbjct: 611 FITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDF-- 668
Query: 561 ICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLIN 620
+ +GI + TPQQNG ER ++ +L R +L + L K FW+ ++ +A ++IN
Sbjct: 669 -YSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYIIN 727
Query: 621 RLPSTAIGGKTPIEVWCGEPANDYDSLRVFGSTAY---YHVKESKLDPRAKKAIFMGIST 677
R+P+ + K+P + G D ++ +VFG +Y H +K D RA+K +F+G
Sbjct: 728 RIPTPLLQNKSPYFLRYGHDP-DLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQ 786
Query: 678 GVKGYRLWCTESKKIIFSRDVTFDESTMLKKVT---VEQSDGTPQQVEDTPKQVEFDRKI 734
G+KG L+ K I SR+VT+ E + + + + + +Q + ++
Sbjct: 787 GIKGAILYDLNHKTIFASRNVTYHEHILPYSNSNQYFQWQYHSNHPIIPATEQTSSNSEL 846
Query: 735 PVAS-TEPAETPEVEGDSXXXXXXXXXXXXXXXSIALDRPRRVIRKPARFDDMVAYAS 791
P+ + +E + P + D+ + + RV +KP D V +S
Sbjct: 847 PLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSS 904
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 179/382 (46%), Gaps = 13/382 (3%)
Query: 417 LETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTK 476
L LWH RLGH ++L Q +K C+ C + ++ F ++
Sbjct: 459 LPQEALWHFRLGHLSND--RLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKAS 516
Query: 477 GILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVET 536
+ +H D+WGP +T S+ G Y++T +DD+SR W+ K+K EV + +E
Sbjct: 517 HCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIEN 576
Query: 537 QTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRC 596
Q +K +RTDNG E+ F + +GI + TPQQNG ER ++ +L R
Sbjct: 577 QFNCKVKTVRTDNGPEFLMPDF---YSSKGIEHQTSCVETPQQNGRVERKHQHILNVARA 633
Query: 597 MLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGSTAY- 655
+L + L K FW+ ++ +A ++INR+P+ + K+P + G D ++ +VFG +Y
Sbjct: 634 LLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDP-DLNNFKVFGCLSYA 692
Query: 656 --YHVKESKLDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSRDVTFDESTML---KKVT 710
H +K D RA+K +F+G G+KG L+ K I SR+VT+ E + K
Sbjct: 693 STLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHEHILPYSNSKQY 752
Query: 711 VEQSDGTPQQVEDTPKQVEFDRKIPVAS-TEPAETPEVEGDSXXXXXXXXXXXXXXXSIA 769
+ + + +Q + ++P+ + +E + P + D+ +
Sbjct: 753 FQWQYHSNHPIIPVTEQTSSNFELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLN 812
Query: 770 LDRPRRVIRKPARFDDMVAYAS 791
+ RV +KP D V +S
Sbjct: 813 TRKSTRVSQKPNHLSDYVCNSS 834
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 155 bits (391), Expect = 2e-37, Method: Composition-based stats.
Identities = 93/269 (34%), Positives = 153/269 (56%), Gaps = 13/269 (4%)
Query: 985 KLQDGSFIYLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKL 1044
K D SF LL+YVDD+++A + E +++K+ L+ F++KDLG+ K +LG+E+ ++
Sbjct: 4 KHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHSKQG 63
Query: 1045 GRLCLNQKQYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKNDAEREYMSRVPYANV 1104
LC Q++Y +L G N +KPVST KL ND+ Y Y +
Sbjct: 64 ISLC--QRKYCLDLLSDSGTIN-SKPVSTSSDASLKL------HNDSSPPYEDIPSYRRL 114
Query: 1105 VGSLMYAMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVGLIFEQDKNN 1164
+G L+Y + TRPDI+ +S+++ P + H A +L+YL+ GL F +N+
Sbjct: 115 IGRLLY-LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFP--RNS 171
Query: 1165 GQRIVGYCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAVTEAV 1224
+ G+ D D+AG +D RRS +G F + + +SW++ Q+TV+ S +EAEY A+ A
Sbjct: 172 SLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASAT 231
Query: 1225 KEAIWLQGLLDELGIRQNNI-VVHCDSQS 1252
E W+ LL +L I+ + + V+ CD+Q+
Sbjct: 232 CELQWILYLLKDLNIQSSKLPVLFCDNQN 260
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/482 (26%), Positives = 201/482 (41%), Gaps = 71/482 (14%)
Query: 270 ASIDNSSANLTSSGEVWLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGS 329
A I NS+ + S WL+DS + H+ + F + + +V T GS
Sbjct: 346 AGIINSTTCSSLSNSYWLVDSGANEHICRDLNLFTSYHAISPSIV---------TLPDGS 396
Query: 330 IHLKNHDGSIRI-----LTDVRYVPSLTKNLISVGAL-ESKGLTVIAKDGVMKVISGALV 383
I H G I LT+V Y S NL+SV + ES T + +
Sbjct: 397 IVTVTHAGYINFSPQFYLTNVLYSSSFRLNLMSVHKVCESLSCTFQFLPNQCIIQDSTSL 456
Query: 384 VMKGVRRRNNLYYYQGNIIIGSTATVVSSDDKELETTRLWHRRLGHAGEKSLKILSDQGL 443
M G+ + + Y G+ L H+R+ I+SD
Sbjct: 457 KMIGLANQQDGLYKLGH---------------------LSHQRMNMMSSLYSNIVSDN-- 493
Query: 444 LKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVT 503
K C+ C KQ + F + + +H D+WGP + +S+ G Y++T
Sbjct: 494 -------KNSVCDICHFAKQKHLPFSISTSHATSNFELLHLDIWGPLSISSIHGHKYFLT 546
Query: 504 FIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICA 563
+DD SR +W+ +LK+K V + K+V+TQ KC+R+DNG E+ +F +
Sbjct: 547 IVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFHVTPKCIRSDNGPEFLILSFYE--- 603
Query: 564 DEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLP 623
GI+ + TPQQNG ER + +L R +L + L +W+ A+ +A LINR P
Sbjct: 604 SLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQSKLPASYWSYALLHAVFLINRKP 663
Query: 624 STAIGGKTPIEVWCGEPANDYDSLRVFGSTAYYHVKESKLDPRAKKAIFMGISTGVKGYR 683
+ + G++P D D+ + ST RA+K +F+G +G KG+
Sbjct: 664 TPLLEGQSPYYAL-HHKFPDIDTFKNQAST------------RARKTVFLGYKSGYKGFI 710
Query: 684 LWCTESKKIIFSRDVTFDESTMLKKVTVEQSDGTPQQVEDTPKQVEFDRKIPVASTEPAE 743
L S++I SR V F E + P E Q E+ I T+ +
Sbjct: 711 LLDIHSREIFVSRHVVFHEYFL----------PYPSNSESITSQWEYFSPIQAVVTKSVD 760
Query: 744 TP 745
TP
Sbjct: 761 TP 762
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 119/233 (51%), Gaps = 43/233 (18%)
Query: 517 LKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTVRNT 576
+K + + F + L+E Q G+ +K L+ DNG E+ F++ C EGI RH VRNT
Sbjct: 1 MKHRSDASKNFKQLNALLENQFGKKVKRLQIDNGLEFCWSEFNEFCKTEGISRHHMVRNT 60
Query: 577 PQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVW 636
PQQN VA+RMN+TLLE+ RCMLSNAGL + FW E
Sbjct: 61 PQQNSVAKRMNQTLLERARCMLSNAGLTRTFWGET------------------------- 95
Query: 637 CGEPANDYDSLRVFGSTAYYHVKESKLDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSR 696
FG T YY V E KL+ RAKK +F+G GVK YR+W ++I SR
Sbjct: 96 ------------GFGCTVYYRVNEGKLESRAKKRVFVGYGDGVKEYRIWSPSENRVILSR 143
Query: 697 DVTFDESTMLK---KVTVEQSDGTPQQVEDTPKQV--EFDRKIPVASTEPAET 744
+V FDE M K + ++ G +QVE + E ++ P + +E AET
Sbjct: 144 NVVFDEIVMFNPIVKFNIPENCGIEKQVEHRESEAICEAEKGSPQSHSE-AET 195
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 8/264 (3%)
Query: 455 CEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVWV 514
C+ C + ++ F + +H D+WGP S+ G Y++T +DD +R +W+
Sbjct: 16 CDVCHFARHKKLPFSHSSSHASSKFQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLWI 75
Query: 515 YTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTVR 574
LK+K EV + ++E Q K +RTDNG E+ + A +GI+ +
Sbjct: 76 ILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEF---LLHEFYASKGILHQSSCV 132
Query: 575 NTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIE 634
TPQQNG ER ++ +L R +L + L FW+ A +A LINR+ + + +P
Sbjct: 133 ETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYH 192
Query: 635 VWCGEPANDYDSLRVFGSTAYYHVKES---KLDPRAKKAIFMGISTGVKGYRLWCTESKK 691
+ P D + +VFG Y +S KL+ RA+K++F+G G KGY L+ +++
Sbjct: 193 LLYDSPP-DITTFKVFGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTRE 251
Query: 692 IIFSRDVTFDESTM-LKKVTVEQS 714
I SR V F E + K ++ QS
Sbjct: 252 IFISRHVVFHECVLPYKSISSSQS 275
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Query: 799 PSTFNEAVKSSEEVKWRKAMEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKK---DGF 855
P T+ EA K WR+AM+ E+ +L TW ++D P K IGC+W+Y K DG
Sbjct: 385 PKTYTEANKFE---CWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGT 441
Query: 856 PDRDSVHYKARLVAKGYAQ 874
+R YKARLVAKGY Q
Sbjct: 442 IER----YKARLVAKGYNQ 456
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 143 bits (361), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 187/420 (44%), Gaps = 41/420 (9%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILTDV 345
W++DS + H+ + F F +++ +V N + G++H + LT V
Sbjct: 351 WIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAGNVHFTPYLH----LTHV 406
Query: 346 RYVPSLTKNLISVGAL---ESKGLTVIAKDGVMKVISGALVVMKGVR------------- 389
Y P NLISV + S + ++ V++ ++ ++ G +
Sbjct: 407 LYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKLSMHFVN 466
Query: 390 ---RRNNLYYYQGNIIIGSTATVVSSD---------DKELETTRLWHRRLGHAGEKSLKI 437
+ +N + N + S + +S + + LWH RLGH + L
Sbjct: 467 QQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHLSNQRLST 526
Query: 438 LSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSG 497
+S L ++ C+ C + ++ F + +H D+WGP + G
Sbjct: 527 MSR--LYPSIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLHFDIWGPLAINYVHG 584
Query: 498 KHYYVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDA 557
Y++T +DD +R +W+ LKSK EV + L+E Q K +RTDNG E+
Sbjct: 585 HKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNGSEF---L 641
Query: 558 FDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACH 617
A +GI+ + TPQQNG ER ++ +L R +L + L FW+ A +A
Sbjct: 642 LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVF 701
Query: 618 LINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGSTAYYHVKES---KLDPRAKKAIFMG 674
LINR+P+ + ++P ++ + + D + +VFG Y +S KL+ RA+K++F+G
Sbjct: 702 LINRVPTLVLQNQSPYQLL-YDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSVFLG 760
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 134 bits (336), Expect = 5e-31, Method: Composition-based stats.
Identities = 109/370 (29%), Positives = 168/370 (45%), Gaps = 81/370 (21%)
Query: 911 DVKTAFLHGDLEEEIYMTQPEGFKVVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQ 970
D FLHGDL+E++YM P+G + VCKL KSLYGLKQ+ R+W+++ +
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQGVSP-PRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTI 262
Query: 971 KYTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEA 1030
+ ++ DH +L + SF LL+YV +SK
Sbjct: 263 GFVQASADHS-FLIRASPTSFTALLIYVAH---SSKG----------------------- 295
Query: 1031 KRILGMEITRDRKLGRLCLNQKQYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKND 1090
+ L Q++Y +L G+ K VSTPL L P D
Sbjct: 296 ----------------ISLCQRKYCLDLLSDAGL-TTCKSVSTPLDYACLLHIDDGPPFD 338
Query: 1091 AEREYMSRVPYANVVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQN 1150
+ Y ++G L+Y + TRPDIS A +S++M P H + +LRYLQ
Sbjct: 339 ------DVLAYRCLIGCLLY-LTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQV 391
Query: 1151 TVDVGLIFEQDKNNGQRIVGYCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVA- 1209
GL F + + +++G+ D+D+ G +D RRS +A + L+S ++
Sbjct: 392 CPGRGLFFP--RTSEMQLLGFSDADWGGCVDSRRS-----LAFQEAIHRFLFFLRSGISC 444
Query: 1210 LSITEAEY-MAVTEAVKEAIWLQGLLDELGIRQNNIVVHCDSQSAIHLAKNQVYHARTKH 1268
SI+ MA IR + +++CD+QSA+H+A N V++ RTKH
Sbjct: 445 FSISHPRTPMA------------------HIRLS--ILYCDNQSALHIAANPVFYERTKH 484
Query: 1269 IDVRFHFVRE 1278
+D+ H VRE
Sbjct: 485 LDIDCHIVRE 494
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 150/342 (43%), Gaps = 45/342 (13%)
Query: 405 STATVVSSDDKELETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCTKGKQT 464
S +V +++ + +T LWH RLGH + L + L ++ C+ C KQ
Sbjct: 427 SCNSVSCNNNVHIPSTALWHFRLGHLSNQRLSQM--HHLYPDIHVDNKFICDICHFAKQR 484
Query: 465 RVKFGTGIHNTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKSKDEVL 524
++ + + + ++ D+WGP S+ G+ Y++T +DD SR +W K+K EV
Sbjct: 485 KLPYNSSTSIASSNFELLYLDIWGPLAKVSIHGQRYFLTIVDDHSRFLWTILFKNKSEVP 544
Query: 525 GVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQNGVAE 584
+ L++ + K +R+DNG + AF A +GI+ + TPQ N
Sbjct: 545 SHIQHFIYLIQNKHKVTPKIIRSDNGHVFLLSAFY---ASQGIIHQRSCVETPQHNVF-- 599
Query: 585 RMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTPIEVWCGEPANDY 644
LINR+P+ + K+P +V + D
Sbjct: 600 ---------------------------------LINRVPTLVLENKSPYQVL-YKTLPDI 625
Query: 645 DSLRVFGSTAYYHVKES---KLDPRAKKAIFMGISTGVKGYRLWCTESKKIIFSRDVTFD 701
+S +VFG Y +S KL RA+K++F+G +G KG L+ +K+I SR+VTF
Sbjct: 626 NSFKVFGCLCYASTLQSHRTKLQSRARKSVFLGYKSGYKGSFLYDLNTKEIFMSRNVTFH 685
Query: 702 ESTMLKKVTVEQSDGTPQQVEDTPKQVEFDRKIPVASTEPAE 743
ES + T Q + Q F +PV ST P+
Sbjct: 686 ESILPYNSTNTHFSSNWQYFTPSHTQTPF-VDVPVPSTFPSS 726
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 111/423 (26%), Positives = 181/423 (42%), Gaps = 56/423 (13%)
Query: 276 SANLTSSGEVWLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNH 335
S +L + WL+DS + H+ F + ++ V N + G++ H
Sbjct: 379 SCSLHVPSDHWLIDSGANEHICSSLHLFHSYYRIKPICVNLPNGSSVIVQYAGTVVFSPH 438
Query: 336 DGSIRILTDVRYVPSLTKNLISVGALESKGL---------TVIAKDGVMKVISGALVVMK 386
+T V Y PS LISV + + L T + +D + + G +
Sbjct: 439 FH----ITHVLYSPSFKVYLISVSKI-CQSLPYHVHFLLNTYVIQDVKTQKMIGLGNLCD 493
Query: 387 GVRRRNNLYYYQGNIIIGSTATVVSSDDK-------------ELETTRLWHRRLGHAGEK 433
G+ R + S+A VS +K + + +WH RLGH +
Sbjct: 494 GLYRLHPFAPASPQAHFISSA--VSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQ 551
Query: 434 SLKILSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTA 493
L ++ H T I ++K + +H D+WGP +
Sbjct: 552 RLSMM------------------HSLYSSITIDNKAYSIASSK--FELLHFDIWGPLSVT 591
Query: 494 SLSGKHYYVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEY 553
S+ G Y++T +DDFSR +WV LK+K EV + L+ T K +R+DNG E+
Sbjct: 592 SVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQITPKYIRSDNGPEF 651
Query: 554 KNDAFDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAIS 613
F A +GI+ + TPQQNG ER ++ +L R +L + L FW+ A+
Sbjct: 652 LIPEF---YASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLPNFFWSYAVI 708
Query: 614 YACHLINRLPSTAIGGKTPIEVWCGEPANDYDSLRVFGSTAYYH---VKESKLDPRAKKA 670
+A LIN++P+ K+P ++ + D +S +VFG + + SKL RA+K+
Sbjct: 709 HAVFLINKVPTPLFKQKSPYQL-LYDSLPDINSFKVFGCLCFASTLLAQRSKLQSRARKS 767
Query: 671 IFM 673
IF
Sbjct: 768 IFF 770
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Query: 573 VRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDKKFWAEAISYACHLINRLPSTAIGGKTP 632
VRNTPQ NGVAERMN+TLLEK R MLSN GL + FWAEA++ C+L+NR P T+I KT
Sbjct: 2 VRNTPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTL 61
Query: 633 IEVWCGEPANDYDSLRVFGSTAYYHVKESKLDPR 666
E+W G+ DY +LRVFG T YYHV E KL+ R
Sbjct: 62 YELWPGKSV-DYSNLRVFGCTVYYHVNEWKLERR 94
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 486 VWGPSTTASLSGKHYYVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCL 545
+WGP + AS+ G Y++T +DD +R +WV LK+K EV + +++ K +
Sbjct: 521 IWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFI 580
Query: 546 RTDNGGEYKNDAFDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLDK 605
RTDNG E+ +F A GI+ + TPQQNG ER ++ +L R +L + L
Sbjct: 581 RTDNGPEFMLPSF---YASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPP 637
Query: 606 KFWAEAISYACHLINRLPSTAIGGKTP 632
FW+ AI +A LINR+P+ + ++P
Sbjct: 638 SFWSYAIHHAVFLINRVPTPLLHNQSP 664
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 455 CEHCTKGKQTRVKFGTGIH-NTKGILDYVHSDVWGPSTTASLSGKHYYVTFIDDFSRRVW 513
C C GK +R F + + K +L+ VHSD++GP + SG Y++TF+D++S+ +W
Sbjct: 15 CNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKMLW 74
Query: 514 VYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYKNDAFDKICADEGIVRHFTV 573
+Y +K K + L VF K+K L E Q+G +K L T GGEY + F+ C ++GI+ T
Sbjct: 75 LYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSKDFESYCTNQGIIHEVTT 134
Query: 574 RNTP 577
TP
Sbjct: 135 PYTP 138
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 378 ISGALVVMKGVRRRNNLYYYQGNIIIGSTATVVSSDDKELETTRLWHRRLGHAGEKSLKI 437
+ G +VM +R LY+ QG + V S + + + T+LWH RLGH E+ ++I
Sbjct: 60 LDGGNIVMAASVKRGTLYFLQGTTLT-DYGVVASFEIDQEDMTKLWHMRLGHMSERGMQI 118
Query: 438 LSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKGILDYVHSDVWGPSTTASLSG 497
L+ LL K EH GK+ R KF IH TKG LDY+H D W PS SL G
Sbjct: 119 LAKDNLLYGHKIKDPGLSEHYAFGKRHRNKFLKVIHRTKGTLDYIHDDCWEPSRVESLGG 178
Query: 498 KHYYVTFIDDFSR 510
Y+++ IDD+SR
Sbjct: 179 HKYFLSLIDDYSR 191
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 40/256 (15%)
Query: 994 LLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITRDRKLGRLCLNQKQ 1053
+++YV DM++ N ++ L + LN F +KDLG K LG+E+ + + G L + Q +
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEV-KPQSNGSLLITQSK 59
Query: 1054 YLRKILKRFGMDNKTKPVSTPLAPHFKLSA-AQSPKNDAE--REYMSRVPYANVVGSLMY 1110
Y+R +L + M + K + +P+ KLS +P +D R + + YAN++G L
Sbjct: 60 YVRDLLAKTDM-QEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGPLSN 118
Query: 1111 AMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVGLIFEQDKNNGQRIVG 1170
+LR+L+ T+ GL+ I+
Sbjct: 119 ---------------------------------VLRHLKGTLSWGLLVRPIPTYPLSILA 145
Query: 1171 YCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAVTEAVKEAIWL 1230
YCD+D+ D D R S VF L +SW + Q+ +A S TEAEY ++ A E +W+
Sbjct: 146 YCDADWGSDPDDR-SVDACVF-LGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWI 203
Query: 1231 QGLLDELGIRQNNIVV 1246
+ L + Q + V
Sbjct: 204 KTYGARLKVIQKKLFV 219
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 29/144 (20%)
Query: 818 MEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKKDGFPDRDSVHYKARLVAKGYAQTEG 877
M+ E+ +L TW LVD P K IGC+W+Y K + D YKARLV KGY Q EG
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKH-YADGSIQRYKARLVVKGYNQVEG 59
Query: 878 IDYNEVFSP----------------------------VVKHSSIRILLALVAQFDLELVQ 909
DY + +SP V K +++R ++AL + + +
Sbjct: 60 WDYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHK 119
Query: 910 LDVKTAFLHGDLEEEIYMTQPEGF 933
LD +AFLHGDL+E++YM P+G
Sbjct: 120 LDANSAFLHGDLQEDVYMLIPQGI 143
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 84.0 bits (206), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 495 LSGKHYYVTFIDDFSRRVWVYTLKSKDEVLGVFLKWKKLVETQTGRCIKCLRTDNGGEYK 554
+ G Y+V FIDD+S W+Y +K++ E+ +++ + K+++TQ + IK R DN EY+
Sbjct: 1 MGGARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEYR 60
Query: 555 NDAFDKICADEGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNA 601
+ +++G F+ T QQ G AER +R +L+ V ML +A
Sbjct: 61 DSKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISA 107
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 82.4 bits (202), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 941 MVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTRSKYDHCVYLRKLQDGSFIYLLLYVDD 1000
MV L KSLYGLKQ+ R WY + + + + S DH ++ ++ F+ +L+YVDD
Sbjct: 1 MVYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYS-RESIFMAVLIYVDD 59
Query: 1001 MLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGMEITR 1040
++IA + I N K L Q F MKDLG K LG+E+ R
Sbjct: 60 LVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELAR 99
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 1206 STVALSITEAEYMAVTEAVKEAIWLQGLLDELGIR-QNNIVVHCDSQSAIHLAKNQVYHA 1264
+TV+ S +EAEY A+ V E WL LL + ++ +++CDSQSA H+A N +H
Sbjct: 247 TTVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHE 306
Query: 1265 RTKHIDVRFHFVREILEERQVQLQKIQTAENPADMLTKVVTAVKFKH 1311
RTKHI++ H VRE L+++ L + +++ AD+LTK + + F +
Sbjct: 307 RTKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSN 353
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 1144 ILRYLQNTVDVGLIFEQDKNNGQRIVGYCDSDYA-GDLDKRRSTTGYVFTLAKAPVSWKS 1202
+L YL+ GL F + + +I GY ++D+A G D RRS + F W S
Sbjct: 3 VLSYLKGCPGKGLFFP--RQSSLQIQGYTNADWAVGCKDTRRSISEQCF------FCWSS 54
Query: 1203 TLQSTVALSITEAEYMAVTEAVKEAIWLQGLLDELGIRQNNI---VVHCDSQSAIHLAKN 1259
+ EAEY A+ A E L LL +L + N I V++CD+QSAI++A N
Sbjct: 55 S----------EAEYRALASATCELQRLTYLLRDLKV--NCIKPPVLYCDNQSAIYIAAN 102
Query: 1260 QVYHARTKHIDVRFHFVREILEERQVQLQKIQTAENPADMLTKVVTAVKFKHCLDLINIV 1319
V+H TKH+++ H VRE L+ +L I + + AD TK + F L + ++
Sbjct: 103 PVFHECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGML 162
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 1178 GDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAVTEAVKEAIWLQGLLDEL 1237
GD D ++STT Y+F + AP+SW S Q VALS +EA+Y+A + A +A+W++ LL+EL
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 1238 -GIRQNNIVVHCDSQSAIHLAKNQVYHAR 1265
+ I + D++ AI LA + H +
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 927 MTQPEGFKVVGKENMVCKLEKSLYGLKQSPRQWYKRFDKFMQRQKYTRSKYDHCVYLRKL 986
M+QP GF N VCKL KSLYGLKQ+P+ W++ KF+ + +K D +++ +
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIY-V 59
Query: 987 QDGSFIYLLLYVDDM 1001
+ +F Y L+YVDD+
Sbjct: 60 KANTFAYFLVYVDDI 74
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 67.4 bits (163), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 418 ETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKG 477
E LWH+RL H EK + L +L ++ L C+HC K+++V F
Sbjct: 6 EKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPT 65
Query: 478 ILDYVHSDVWGPSTTASLSGKHYYVTFIDD 507
ILD VH ++GP T ++ G Y+++FIDD
Sbjct: 66 ILDLVHCHLFGPMKTGTIGGSTYFLSFIDD 95
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 67.4 bits (163), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 418 ETTRLWHRRLGHAGEKSLKILSDQGLLKNVKTCKLDFCEHCTKGKQTRVKFGTGIHNTKG 477
E LWH+RL H EK + L +L ++ L C+HC K+++V F
Sbjct: 6 EKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPT 65
Query: 478 ILDYVHSDVWGPSTTASLSGKHYYVTFIDD 507
ILD VH ++GP T ++ G Y+++FIDD
Sbjct: 66 ILDLVHCHLFGPMKTGTIGGSTYFLSFIDD 95
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 45/77 (58%)
Query: 1161 DKNNGQRIVGYCDSDYAGDLDKRRSTTGYVFTLAKAPVSWKSTLQSTVALSITEAEYMAV 1220
+K ++ GY DSD GD RRST+G +F A +SW + Q ALS EAEY+A
Sbjct: 6 NKKGESKLEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAG 65
Query: 1221 TEAVKEAIWLQGLLDEL 1237
T A +AIWL ++ EL
Sbjct: 66 TFAACQAIWLDNVIKEL 82
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 42/140 (30%)
Query: 818 MEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYAKKDGFPDRDSVHYKARLVAKGYAQTEG 877
M +E+ S+ KN+T LV +KAIG KWVY K +++ ++V K
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLK--------TNHEGKIVKK------- 45
Query: 878 IDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLEEEIYMTQPEGFKVVG 937
+ L D+K FL+G LEE +++ QP G ++
Sbjct: 46 ---------------------------VPLFHFDMKLYFLNGSLEETMFVKQPSGLEIKC 78
Query: 938 KENMVCKLEKSLYGLKQSPR 957
KE V KL K LYGLKQ+PR
Sbjct: 79 KEENVYKLHKDLYGLKQAPR 98
>IMGA|Medtr5g046390.1 gag-pol polyprotein, related
chr05_pseudomolecule_IMGAG_V3 19508075-19507539 H
EGN_Mt090430 20090702
Length = 178
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 280 TSSGEVWLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSI 339
TS +WL+DS +++++ R+ F + + + V+ AN +EGIG+I KNH GS
Sbjct: 6 TSKPSLWLIDSGATNNLTCDREVFTELDKSYSSVIRVANGAEITSEGIGTIVFKNHSGS- 64
Query: 340 RILTDVRYVPSLTKNLISVGALESKGLTVI 369
+++ +V YVP +++NL+SV L G V+
Sbjct: 65 KLVLNVLYVPQISENLLSVPQLLKNGYKVL 94
>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
EGN_Mt090430 20090702
Length = 532
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 125/300 (41%), Gaps = 20/300 (6%)
Query: 120 ITKFNQLVGDLFNLDVIFGDEDLAVLLLASLPDEFEHLTTTLIYGNKDVTFSEVCADLYS 179
I +++QL+ +L ++I D +A L+ LP ++ L + +K ++ +++ +
Sbjct: 139 INEYHQLIEELKAENIILPDVFVAAALVEKLPSSWDDYKQQLKHKHKQMSLNDLIRHIII 198
Query: 180 HELRKIE---KKEKATEVEALVVXXXXXXXXXXXXXXXXXXXT-----RVEKDECAFCRE 231
+ + E + KA E A ++ + EC C +
Sbjct: 199 EDTSRKECGAARAKALESRANLIQNNARKQQRYENKSDHALKVTNPNFKANLGECYVCGK 258
Query: 232 KGHWKKDCPKLKAKGKAV-INSNIAECDDEDSDFSLVIMASIDNSSANLTSSGEVWLLDS 290
KGH C K G+ +N+ + DD+ D VI A I S +L + + W++DS
Sbjct: 259 KGHKAYHCRYRKVNGQPPKPKANLTQGDDKKYDDDDVIAAVI--SKVHLVNDVQKWVVDS 316
Query: 291 ACSHHMSPHRDWFFDFKEL--ENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILTDVRYV 348
+ H+ R+ F + + + + VY ++ G G + LK G L+DV V
Sbjct: 317 GATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLALSDVLNV 376
Query: 349 PSLTKNLISVGALESKGLTVIAKDGVMKVISGALVVMKGVRRRNNLYYYQGNIIIGSTAT 408
P++ NLISV L G+ V + M + + V G Y QG ++ S A
Sbjct: 377 PTIRTNLISVALLNKVGVKVSFESDKMVMSKNNVFVGNG-------YCDQGLFVLSSFAN 429
>IMGA|Medtr4g114890.1 gag-pol polyprotein, related
chr04_pseudomolecule_IMGAG_V3 26420343-26419721 E
EGN_Mt090430 20090702
Length = 183
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILTDV 345
WL+DS C+HHM+ RD F + + V N EGIG++ +K+H G +I ++V
Sbjct: 13 WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYKQI-SNV 71
Query: 346 RYVPSLTKNLISVGALESKGLTVI 369
Y P L ++L+SV L +KG V+
Sbjct: 72 LYAPKLNQSLLSVPQLLTKGYKVL 95
>IMGA|Medtr6g086670.1 gag-pol polyprotein, related
chr06_pseudomolecule_IMGAG_V3 17772429-17771671 H
EGN_Mt090430 20090702
Length = 252
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVV----YTANNVPCFTEGIGSIHLKNHDGSIRI 341
W +DS +HHM+ R++F KEL + AN P EGIG+I ++NH G +++
Sbjct: 13 WHIDSGATHHMTYDRNFF---KELNKTAISYNFIVANGAPIEVEGIGTITIRNHSG-LKL 68
Query: 342 LTDVRYVPSLTKNLISVGALESKGLTV 368
+ +V YVP+LT +++SV L +G V
Sbjct: 69 ILNVLYVPNLTSSVLSVPQLLEEGFHV 95
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 910 LDVKTAFLHGDLEEEIYMTQPEGFKVVGKENMVCKLEKSLYGLKQSPRQWYKR 962
+DV AFLHGDL+E++YM P GF +VCKL KS Y LK +P+ W+ +
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFH-TSSSRLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 1036 MEITRDRKLGRLCLNQKQYLRKILKRFGMDNKTKPVSTPLAPHFKLSAAQSPKNDAEREY 1095
MEI + K L L+Q Y +ILK+F M + ++ H + K E E
Sbjct: 1 MEILINSK--GLILHQTDYASEILKKFNMLDCNSTIT-----HADANIIYEVKE--EDEG 51
Query: 1096 MSRVPYANVVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKEHWQAVKWILRYLQNTVDVG 1155
+ + ++GSL Y + +RP IS VG+VSR+M +P K ++ + K ILRY+ +T+ G
Sbjct: 52 VDPTMFRRLIGSLRY-LCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYG 110
Query: 1156 LIFEQDKNNGQ-RIVGYCDSD 1175
++F + Q + GY D+D
Sbjct: 111 ILFLVVQATEQLDMEGYSDAD 131
>IMGA|Medtr1g102740.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 21153367-21155226 E
EGN_Mt090430 20090702
Length = 234
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILTDV 345
W++DS C+ H + R+ F + K+ N AN EGIG++ +++ G IL +V
Sbjct: 13 WVVDSGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKLILNNV 72
Query: 346 RYVPSLTKNLISVGALESKGLTVIAK 371
Y+P +L+SV L +G V+ K
Sbjct: 73 NYIPENCYSLLSVAGLLEEGYQVLFK 98
>IMGA|Medtr6g086660.1 gag-pol polyprotein, related
chr06_pseudomolecule_IMGAG_V3 17762174-17761410 H
EGN_Mt090430 20090702
Length = 254
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVV----YTANNVPCFTEGIGSIHLKNHDGSIRI 341
W +DS +HHM+ R F KEL ++ N P EG G++ +K+H G +++
Sbjct: 13 WYIDSGATHHMTYDRSLF---KELNKTIISCNIIVGNGAPIEVEGFGTVTIKHHSG-LKL 68
Query: 342 LTDVRYVPSLTKNLISVGALESKGLTV 368
+ +V YVP LT +L+SV L +G V
Sbjct: 69 ILNVFYVPKLTSSLLSVPQLLEEGYHV 95
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1219 AVTEAVKEAIWLQGLLDELGIRQNN-IVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVR 1277
A+ +A E W+ LD+ I ++ I+++CD+ S++H+ N V+H RTKHI++ H VR
Sbjct: 3 ALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVVR 62
Query: 1278 E 1278
+
Sbjct: 63 D 63
>IMGA|Medtr8g081950.1 lectin receptor kinase, related
chr08_pseudomolecule_IMGAG_V3 16974207-16974491 H
EGN_Mt090430 20090702
Length = 94
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 978 DHCVYLRKLQDGSFIYLLLYVDDMLIASKNKQEIENLKNQLNQEFEMKDLGEAKRILGME 1037
+H +Y+ K + I L LYV+D LI N I KN L +EFEM DLG L ME
Sbjct: 12 EHGMYVIKDKSKGVIILYLYVNDFLITCSNGSYINEFKNDLMKEFEMVDLGHISYFLRME 71
Query: 1038 ITRDRKLGRLCLNQKQYLRKILKRF 1062
R + +++ Y +ILKRF
Sbjct: 72 FQRTSRASN--SSKEIYASEILKRF 94
>IMGA|Medtr5g089840.1 copia LTR rider, related
chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
EGN_Mt090430 20090702
Length = 154
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 113 GTTMNEHITKFNQLVGDLFNLDVIFGDEDLAVLLLASLPDEFEHLTTTLIYGNKDVTFSE 172
GT +++H++ N +V +L +++V DED + ++ SLP + HL L+YG + ++F E
Sbjct: 52 GTKISDHLSTLNNIVSELESIEVKIDDEDKTLRIILSLPPSYVHLKPVLMYGKESLSFEE 111
Query: 173 VCADLYSHEL 182
V + S E+
Sbjct: 112 VATKIISEEM 121
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 1244 IVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVREILEERQVQLQKIQTAENPADMLTKV 1303
+ + D+ S I+LAKN + H R+KHI++RFH++RE + + +++L+ ++ AD+LTK
Sbjct: 116 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKG 175
Query: 1304 VTAVKFKHCLDLINI 1318
V F D + I
Sbjct: 176 VKIEVFTKPRDSMEI 190
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 1244 IVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVREILEERQVQLQKIQTAENPADMLTKV 1303
+ + D+ S I+LAKN + H R+KHI++RFH++RE + + +++L+ ++ AD+LTK
Sbjct: 25 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKG 84
Query: 1304 VTAVKFKHCLDLINI 1318
V F D + I
Sbjct: 85 VKIEVFTKPRDSMEI 99
>IMGA|Medtr1g102780.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 21184395-21181931 E
EGN_Mt090430 20090702
Length = 311
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 286 WLLDSACSHHMSPHRDWFFDFKELENEVVYTANNVPCFTEGIGSIHLKNHDGSIRILTDV 345
W+++S C+ H + R+ F + K+ N AN EGIG++ +++ G IL +V
Sbjct: 36 WVVESGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKLILNNV 95
Query: 346 RYVPSLTKNLISVGALESKGLTVIAK 371
Y+P +L+SV L +G V+ K
Sbjct: 96 NYIPENCYSLLSVAGLLEEGYQVLFK 121
>IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related
chr05_pseudomolecule_IMGAG_V3 21011474-21012209 E
EGN_Mt090430 20090702
Length = 210
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 32/190 (16%)
Query: 265 SLVIMASIDNSSANLTSSG----EVWLLDSACSHHMSPHRDWFFDFKELENEVVYTAN-- 318
+LV + + + N + SG E W+LDS S+HM+ + D KE+ V N
Sbjct: 11 TLVELLNSSKVTPNESMSGKTKLESWILDSGASNHMTGTLQYMHDVKEVIGCPVGLPNCR 70
Query: 319 NVPCFTEGIGSIHLKNHDGSIRILTDVRYVPSLTKNLISVGAL--------ESKGLTVIA 370
C EG +K DG +R L +V YVP L NLIS+ L + G
Sbjct: 71 TTTCTKEGT----VKLTDG-LR-LENVLYVPKLNCNLISISQLLDELNCNVQFNGNFCAI 124
Query: 371 KDGVMKVISGALVVMKGVRRRNNLYYYQGNIIIGSTATVVSSDDKELETTRLWHRRLGHA 430
+D K++ GA +R+ LY+++ V + + +WH+RLGH
Sbjct: 125 QDRTSKMLIGA------GEQRDGLYFFR------EVPKVKACKVEGTNQLEVWHKRLGHP 172
Query: 431 GEKSLKILSD 440
K+ +++S+
Sbjct: 173 SWKTTQLVSN 182
>IMGA|Medtr3g089910.1 copia LTR rider, putative
chr03_pseudomolecule_IMGAG_V3 21313887-21314173 H
EGN_Mt090430 20090702
Length = 76
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 27/101 (26%)
Query: 332 LKNHDGSIRILTDVRYVPSLTKNLISVGALESKGLTVIAKDGVMKVISGALVVMKGVRRR 391
++ HDG L +VR+VP +TKN IS+ L+ K + + GV+ G+ V++K V+R
Sbjct: 3 IRTHDGKFCTLKEVRHVPHMTKNQISLSLLDKKRFSFKGEGGVIYACKGSSVILKVVKR- 61
Query: 392 NNLYYYQGNIIIGSTATVVSSDDKELETTRLWHRRLGHAGE 432
E +LWH RLGH E
Sbjct: 62 --------------------------EMKKLWHMRLGHMSE 76
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 1226 EAIWLQGLLDELGI-RQNNIVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFV---REILE 1281
E W++ LL +L I + ++++C+SQ+A+H+AK V+H RTK+I V HF+ + LE
Sbjct: 7 ELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFIYLFTKALE 66
Query: 1282 ERQVQLQKIQTAENPADMLTKVVTAV 1307
Q Q + A T V+T V
Sbjct: 67 RHQFQTVLGKMAIRKPHAATGVMTQV 92
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 1235 DELGIRQNNIVVHCDSQSAIHLAKNQVYHARTKHIDVRFHFVREILEERQVQLQKIQTAE 1294
DE+ ++ + D++SAI+LAKN ++H + KH++ RFHF+R+ + + ++ ++ T +
Sbjct: 8 DEVAVK-----LKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQD 62
Query: 1295 NPADMLTKVVTAVKF 1309
D+ TK + +F
Sbjct: 63 QLTDLFTKALKRDQF 77
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 818 MEDEMKSLYKNQTWNLVDPPKGKKAIGCKWVYA---KKDGFPDRDSVHYKARLVAKGYAQ 874
M ++++++ W+L K K IGCKW Y K +G +R +K L+ K Y +
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIER----FKTFLMVKDYTR 56
Query: 875 TEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLD 911
EG++ + FS V K + + +LL++V L QLD
Sbjct: 57 QEGVNSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93