Jatropha Genome Database

JcCA0080591.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.30 - phase: 0 
         (267 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g089190.1 Homeodomain-related chr07_pseudomolecule_IM...    88   4e-18

>IMGA|Medtr7g089190.1 Homeodomain-related
           chr07_pseudomolecule_IMGAG_V3 19524989-19520389 E
           EGN_Mt090430 20090702
          Length = 906

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 119 VWLEEELDFLWIGVRRHGQGNWEAMLRDPSLSFSKHKTIEDLSRRWEKERLKIL 172
           +W EEELDFLWIGVRRHG+GNW+AMLRDP L FS  +   DL+ RWE+E+LK+L
Sbjct: 619 MWSEEELDFLWIGVRRHGRGNWDAMLRDPRLRFSPLRVPWDLAERWEEEQLKLL 672