Jatropha Genome Database

JcCA0080501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080501.10 + phase: 0 /partial
         (85 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g120530.1 Zinc finger, Zim17-type chr01_pseudomolecul...   147   9e-37

>IMGA|Medtr1g120530.1 Zinc finger, Zim17-type
           chr01_pseudomolecule_IMGAG_V3 25963063-25961122 E
           EGN_Mt090430 20090702
          Length = 199

 Score =  147 bits (372), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 74/84 (88%)

Query: 1   MIFTCKVCETRSIKTACRDSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARG 60
           M+FTCKVCETRS+KT CR+SYEKGVV+ARCGGCNNLHLIADH GWFGE G++EDFLAA G
Sbjct: 108 MVFTCKVCETRSVKTFCRESYEKGVVIARCGGCNNLHLIADHRGWFGEKGTVEDFLAAHG 167

Query: 61  EEVKKGSIDTLNLTLEDLAGSNIS 84
           E+VK+GSIDTLN T ED+ G   S
Sbjct: 168 EKVKRGSIDTLNATFEDITGKQSS 191