Jatropha Genome Database

JcCA0080281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.20 + phase: 0 
         (322 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g006050.1 hypothetical protein chr07_pseudomolecule_I...   126   1e-29

>IMGA|Medtr7g006050.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 827538-826397 E
           EGN_Mt090430 20090702
          Length = 153

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 198 SQEDIQIIPRSKESLLNSITEIHYVDVGLNSAGAYITDHNVIERISKRLTQGAPGIRFVL 257
           S ++I I+P++KE++LNSI+E+HYVDVGLNS GAY+ + +V ERISKRL  GA  + FVL
Sbjct: 14  SVDEISIVPKTKETILNSISEVHYVDVGLNSIGAYLANRDVFERISKRLIHGARQLHFVL 73

Query: 258 HGTPRQWCDSRRVLIRNEKDKLVHLLQSEARRSGGKL-KVCEKFYFADRPPDLQMHFEII 316
           HGTPR W D +R  IR EKDK++ LL+ EA ++ G L   C   Y   R   +  H   +
Sbjct: 74  HGTPRHWTDEQRDWIRKEKDKMLLLLELEAGKTKGNLVNFCIFLYSTHRYKYMTQHVYEM 133

Query: 317 QSM 319
           +S+
Sbjct: 134 ESI 136