Jatropha Genome Database

JcCA0080281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.10 - phase: 0 /pseudo
         (169 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g129380.1 H+ transporting ATPase, proton pump chr08_p...   126   7e-30
IMGA|Medtr2g041550.1 H+ transporting ATPase, proton pump chr02_p...   122   9e-29
IMGA|Medtr3g133390.1 H+ transporting ATPase, proton pump chr03_p...   119   1e-27

>IMGA|Medtr8g129380.1 H+ transporting ATPase, proton pump
           chr08_pseudomolecule_IMGAG_V3 30548785-30552354 H
           EGN_Mt090430 20090702
          Length = 250

 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 74/115 (64%)

Query: 4   ESVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXXX 63
           +S++L+ +  E VDLE IP+EEVF+ LKCTK GLSS+    RL +FG N           
Sbjct: 5   KSISLEQIKNETVDLERIPVEEVFEQLKCTKEGLSSEEGANRLQIFGPNKLEEKKDSKIL 64

Query: 64  XXXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
              GFMWNPLSWVME          +G GK PD+ DFVGI+ LLVINSTISFIEE
Sbjct: 65  KFLGFMWNPLSWVMEAAALMAIGLANGNGKPPDWQDFVGIICLLVINSTISFIEE 119


>IMGA|Medtr2g041550.1 H+ transporting ATPase, proton pump
           chr02_pseudomolecule_IMGAG_V3 11416534-11420473 H
           EGN_Mt090430 20090702
          Length = 252

 Score =  122 bits (306), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 73/114 (64%)

Query: 5   SVALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXXXX 64
           S++LD +  E VDLE IP+EEVF+ LKCT+ GLSS   + R+ +FG N            
Sbjct: 8   SISLDQIKNETVDLERIPIEEVFEQLKCTREGLSSTEGENRIQIFGPNKLEEKKESKFLK 67

Query: 65  XXGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
             GFMWNPLSWVME          +G G+ PD+ DFVGI+ LLVINSTISFIEE
Sbjct: 68  FLGFMWNPLSWVMEAAALMAIALANGEGQPPDWQDFVGIICLLVINSTISFIEE 121


>IMGA|Medtr3g133390.1 H+ transporting ATPase, proton pump
           chr03_pseudomolecule_IMGAG_V3 33794639-33791892 E
           EGN_Mt090430 20090702
          Length = 246

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 72/113 (63%)

Query: 6   VALDAVIKEAVDLENIPLEEVFDHLKCTKNGLSSDAVQERLDLFGHNXXXXXXXXXXXXX 65
           ++L+ +  E VDLE IP+EEVF+ LKC++ GL+SD    RL +FG N             
Sbjct: 4   ISLEEIKNENVDLERIPVEEVFEQLKCSRAGLTSDEGANRLQVFGPNKLEEKRESKFLKF 63

Query: 66  XGFMWNPLSWVMEXXXXXXXXXXHGGGKSPDYHDFVGIVILLVINSTISFIEE 118
            GFMWNPLSWVME          +G G+ PD+ DFVGI+ LLVINSTISFIEE
Sbjct: 64  LGFMWNPLSWVMEAAAIMAIALANGSGRPPDWQDFVGIISLLVINSTISFIEE 116