Jatropha Genome Database

JcCA0079871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079871.20 - phase: 2 /pseudo/partial
         (372 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235753_14.1 N-6 Adenine-specific DNA methylase; Exodeoxyr...    72   5e-13
IMGA|AC235753_14.2 N-6 Adenine-specific DNA methylase; Exodeoxyr...    71   8e-13

>IMGA|AC235753_14.1 N-6 Adenine-specific DNA methylase;
           Exodeoxyribonuclease III xth AC235753.1 83675-80136 E
           EGN_Mt090430 20090702
          Length = 278

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 23/148 (15%)

Query: 194 FWTCSRSKLGYSGTAIISR--IKPISVSYGLG--IPDHDSEGRLVTAEFDSFYLISAYVP 249
           +W+ + SK  Y+GTA+  +   KP SV + L      H+ +GR++  EF++  L++ YVP
Sbjct: 132 WWSLAESK--YAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEFETLRLLNTYVP 189

Query: 250 NSGDGLKRLSY-RIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNP-------- 300
           N+G   +  S+ R  +WD  +  ++ +    KP+I  GDLN +H+EID+  P        
Sbjct: 190 NNGWKEEPNSFQRRRKWDKRILEFVNQ-NSDKPLIWCGDLNVSHEEIDVSQPEFFSTAKL 248

Query: 301 ----AGNRR---SAGFTDEERQSFGTKL 321
                 N+      GFT  ER  FGT L
Sbjct: 249 NGYVPPNKEDYGQPGFTLAERARFGTIL 276


>IMGA|AC235753_14.2 N-6 Adenine-specific DNA methylase;
           Exodeoxyribonuclease III xth AC235753.1 83675-77442 E
           EGN_Mt090430 20090702
          Length = 367

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 23/148 (15%)

Query: 194 FWTCSRSKLGYSGTAIISR--IKPISVSYGLG--IPDHDSEGRLVTAEFDSFYLISAYVP 249
           +W+ + SK  Y+GTA+  +   KP SV + L      H+ +GR++  EF++  L++ YVP
Sbjct: 132 WWSLAESK--YAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEFETLRLLNTYVP 189

Query: 250 NSGDGLKRLSY-RIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNPA------- 301
           N+G   +  S+ R  +WD  +  ++ +    KP+I  GDLN +H+EID+  P        
Sbjct: 190 NNGWKEEPNSFQRRRKWDKRILEFVNQ-NSDKPLIWCGDLNVSHEEIDVSQPEFFSTAKL 248

Query: 302 --------GNRRSAGFTDEERQSFGTKL 321
                    +    GFT  ER  FGT L
Sbjct: 249 NGYVPPNKEDYGQPGFTLAERARFGTIL 276