Jatropha Genome Database

JcCA0079711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079711.20 - phase: 2 /partial
         (130 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140930.1 Calcium-binding EF-hand chr07_pseudomolecul...    91   2e-19
IMGA|Medtr7g140930.2 Calcium-binding EF-hand chr07_pseudomolecul...    90   3e-19

>IMGA|Medtr7g140930.1 Calcium-binding EF-hand
           chr07_pseudomolecule_IMGAG_V3 34026348-34030059 E
           EGN_Mt090430 20090702
          Length = 333

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 26  QLLNNEEKVKNVMEKVLQEKHSKKNDQKDTEIIRGFLEENGKELGLPPSEANEAVMLLYD 85
           QLL NE+++ + +EK LQEK + K+  + TEIIR FLE + KELGLP SEA +A  L YD
Sbjct: 229 QLLANEKELSSFVEKALQEKANAKDGLESTEIIRSFLERDAKELGLPLSEAGDAAALFYD 288

Query: 86  AVFAEVECGKCIAE-SEDEFRELVKEILKNFAQQLQANPVY 125
           +VFA+V   K   E  ++E  +L+K+IL+  A+QL+ +PVY
Sbjct: 289 SVFADVAKEKDGVELDKEELAKLLKDILEKMAEQLELSPVY 329


>IMGA|Medtr7g140930.2 Calcium-binding EF-hand
           chr07_pseudomolecule_IMGAG_V3 34027096-34030059 E
           EGN_Mt090430 20090702
          Length = 205

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 12  IVLCKFLQPLN--KHLQLLNNEEKVKNVMEKVLQEKHSKKNDQKDTEIIRGFLEENGKEL 69
            V  + +Q +N  K  QLL NE+++ + +EK LQEK + K+  + TEIIR FLE + KEL
Sbjct: 85  FVFVQNIQIINGFKIRQLLANEKELSSFVEKALQEKANAKDGLESTEIIRSFLERDAKEL 144

Query: 70  GLPPSEANEAVMLLYDAVFAEVECGKCIAE-SEDEFRELVKEILKNFAQQLQANPVY 125
           GLP SEA +A  L YD+VFA+V   K   E  ++E  +L+K+IL+  A+QL+ +PVY
Sbjct: 145 GLPLSEAGDAAALFYDSVFADVAKEKDGVELDKEELAKLLKDILEKMAEQLELSPVY 201