Jatropha Genome Database

JcCA0079261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079261.20 + phase: 0 
         (204 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g097010.1 Harpin-induced 1 chr02_pseudomolecule_IMGAG...   132   2e-31
IMGA|Medtr4g110950.1 Ribosomal protein S3, N-terminal; Harpin-in...   112   1e-25
IMGA|Medtr7g132680.1 Harpin-induced 1 chr07_pseudomolecule_IMGAG...    50   7e-07

>IMGA|Medtr2g097010.1 Harpin-induced 1 chr02_pseudomolecule_IMGAG_V3
           22600540-22599454 F EGN_Mt090430 20090702
          Length = 217

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 111/180 (61%), Gaps = 6/180 (3%)

Query: 3   NSRCKCCN-FTVGLVIAALFMWQRFTTAKPKCFLQEIYVPALNQSSN--SPSNTTLFFQL 59
           NS C CC+ F + + + ALF+W      +PK ++ +IY+PALN++ N  + SNTT  F L
Sbjct: 7   NSCCSCCSGFIITIGLMALFIWLSLRVDEPKLYIDKIYLPALNKALNTTAKSNTTFTFLL 66

Query: 60  KLENTNIVKGVYYDPV--NVTFFDSPNRTHSIGNFTIPKFYQGRNKKAIKSGEINDTGLD 117
           KL N N  KG+ YDP+  N TF+++ N T  +GN T+  FYQG  KKA K+G +     +
Sbjct: 67  KLVNPNKDKGIQYDPIHLNFTFYNTLNTTLPLGNVTVNGFYQGHEKKAKKNGVVEAGVKN 126

Query: 118 IEAVLRAVSNGSVVFRVDMATSVRNKFVVFKTKRRRINVGAYVNVSNQGTQVNPRKGVRL 177
           + A ++ V +G V  RVD  T+V+ K +V+ TKR R+  GA V + + G ++  +K VRL
Sbjct: 127 LTASVKGVVDGKVYLRVDYITAVKYKILVWYTKRDRLWGGANVEIGDSGEKMG-KKSVRL 185


>IMGA|Medtr4g110950.1 Ribosomal protein S3, N-terminal;
           Harpin-induced 1 chr04_pseudomolecule_IMGAG_V3
           25283372-25282671 E EGN_Mt090430 20090702
          Length = 224

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 100/182 (54%), Gaps = 15/182 (8%)

Query: 6   CKCC-NFTVGLVIAALFMWQRFTTAKPKCFLQEIYVPALNQSSNSPS----NTTLFFQLK 60
           C CC +F     +  LF+W    T +PKCF+Q +Y+P+LN++  S      N T+ F LK
Sbjct: 13  CTCCTSFITSTGLTILFLWLTLRTQQPKCFIQSLYLPSLNKTITSNHKHSINNTIIFNLK 72

Query: 61  LENTNIVKGVYYDPVNVTF--FDSPNRTHSIGNFTIPKFYQGRNKKAIK--SGEINDTGL 116
           L N N  KGVYYD + +TF  F   N T  + N T+  FYQG  K A K  S E    G 
Sbjct: 73  LANQNEDKGVYYDAICLTFALFLDVNTTRPLANSTLDGFYQGHGKTAEKWSSAEARGGGG 132

Query: 117 DIEAVLRAVSNGSVVFRVDMATSVRNKFVVFKTKRRRINVGAYVNVS-NQGTQVNPRKGV 175
            +   ++    GSV  RV+  T V+ K +   TKR R++ GA V V+ + G +VNP KG+
Sbjct: 133 GVNRTVQ----GSVFLRVEFVTRVKYKILFVYTKRHRLSGGANVEVNVSSGQKVNP-KGI 187

Query: 176 RL 177
           RL
Sbjct: 188 RL 189


>IMGA|Medtr7g132680.1 Harpin-induced 1 chr07_pseudomolecule_IMGAG_V3
           30814535-30815565 E EGN_Mt090430 20090702
          Length = 191

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 49  SPSNTTLFFQLKLENTNIVKGVYYDPVNVTFFDSPNRTHSIGNFTIPKFYQGRNKKAIKS 108
           S  N T+F+ L++ N N    +YYD + ++F     +   +G+ T+  F+QG +K  I S
Sbjct: 49  SDQNGTIFYSLEIGNPNKDSSIYYDDIILSFLYG-QQEDKVGDATVGSFHQGTSKSRIVS 107

Query: 109 GEINDTGLDIEAVLRAVSNGSVVFRVDMATSVRNKFVVFKTKRRRINVGAYVNVSNQG 166
             +N      + + +A+SN +   +  + T  R K    ++K  R+ +   + + + G
Sbjct: 108 DIVNAKPGPFKPLFKAISNATAELKASLTTRYRYKTWGVRSKFHRLLLKGILPIDSDG 165