Jatropha Genome Database
- JcCA0078611.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0078611.10 - phase: 2 /TE/partial
(1269 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 169 9e-42
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 164 3e-40
IMGA|Medtr7g126870.1 hypothetical protein chr07_pseudomolecule_I... 161 2e-39
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 157 4e-38
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 156 8e-38
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 155 9e-38
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 154 2e-37
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 151 2e-36
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 150 3e-36
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 149 7e-36
IMGA|Medtr6g069740.1 Zinc finger, C4-type chr06_pseudomolecule_I... 149 1e-35
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 145 2e-34
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 141 2e-33
IMGA|Medtr3g080970.1 Retrotransposon gag protein chr03_pseudomol... 127 3e-29
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 127 3e-29
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 121 3e-27
IMGA|Medtr3g019580.1 Retrotransposon gag protein chr03_pseudomol... 120 5e-27
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 116 7e-26
IMGA|Medtr7g045780.1 Retrotransposon gag protein chr07_pseudomol... 115 1e-25
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 114 2e-25
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 111 3e-24
IMGA|Medtr7g123950.1 Retrotransposon gag protein chr07_pseudomol... 104 3e-22
IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H... 102 1e-21
IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related chr0... 99 1e-20
IMGA|Medtr8g005190.1 Integrase, catalytic region, related chr08_... 90 7e-18
IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG... 90 9e-18
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 86 1e-16
IMGA|Medtr5g032700.1 Polynucleotidyl transferase, Ribonuclease H... 81 3e-15
IMGA|Medtr5g007330.1 Integrase, catalytic region, related chr05_... 75 1e-13
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 75 3e-13
IMGA|Medtr5g106230.1 hypothetical protein chr05_pseudomolecule_I... 56 1e-07
IMGA|Medtr7g029520.1 Integrase, catalytic region, putative chr07... 52 2e-06
IMGA|Medtr7g009620.1 Integrase, catalytic region, putative chr07... 51 4e-06
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 169 bits (428), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 143/255 (56%), Gaps = 33/255 (12%)
Query: 10 SKMVNDHLQNPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGS 69
SK + D Q+P +P+FLH +ENP V+VS L NY +W++A+K AL SK K+ F+NG+
Sbjct: 17 SKTIKDPSQDPRSPFFLHPSENPGAVLVSTPLTDHNYHNWSRAMKRALSSKNKIRFINGT 76
Query: 70 MPPPSXADLRYSTXERCNTMILSWITKYIMDXXGIXCMEXFARSFPSRXCITNL------ 123
+P PS D Y +RC+ M+LSWIT+ + F S CI +
Sbjct: 77 LPKPSYLDSTYDLWDRCDNMVLSWITRTLS-----------PHIFQSTICIESAFELWKD 125
Query: 124 ---KSPRRNFXFK------------QGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPC 168
+ + NF F+ QG S+ +YFT +KILWDEL + RP P+CSY PC
Sbjct: 126 LEDRFSKGNF-FRVSDLLRDLHSTQQGDRSLSKYFTNMKILWDELEDLRPTPSCSYVNPC 184
Query: 169 SCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLY 228
+C + + + +I FLKGLN Y++V++Q +++D LPS++K +SLV QQ+
Sbjct: 185 TCSLSNSVRNYKNMEYIICFLKGLNTIYSNVRTQNLLMDPLPSISKVYSLVSQQDFNHYD 244
Query: 229 TSTSESKALLNKSFR 243
ST+ SK+ +R
Sbjct: 245 DSTTVSKSSSEAEYR 259
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 140/236 (59%), Gaps = 23/236 (9%)
Query: 24 YFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYSTX 83
Y++H +E P V V+P+L G NYL+W +++K AL +K K VF++GS+P P DL +
Sbjct: 19 YYVHPSEGPNSVTVTPLLTGPNYLAWNRSMKRALGTKNKFVFIDGSVPIPPMDDLNRTAW 78
Query: 84 ERCNTMILSWIT--------------KYIMDXXGIXCMEXFARSFPSRXCITNLKSPRRN 129
ERCN +ILSWI +Y +D I E F++ R + +L+S N
Sbjct: 79 ERCNNLILSWIINSVSPQIAQTIVFHEYAIDV-WIELQERFSKV--DRIRVASLRSSINN 135
Query: 130 FXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFL 189
KQG SV++YFT +K LW+EL + RP+P C+ PC C ++ + F D VI+FL
Sbjct: 136 L--KQGDKSVLDYFTSIKSLWEELNSHRPMPMCTCPYPCRCESMRAARDFRMEDQVIQFL 193
Query: 190 KGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLL----YTSTSESKALLNKS 241
GLND ++ VK+Q +++D LPS+NK +S+VIQ+E ++ S +S L+N S
Sbjct: 194 TGLNDSFSVVKTQVLLIDPLPSINKVYSMVIQEESNIIPPTSLASNEDSSILVNAS 249
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 621 GHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDN 677
GH FL TIVDD RFLW+ L+K KS V + V+ F+ I T +T +R+DN
Sbjct: 595 GHKYFL-------TIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQITPKYIRSDN 647
Query: 678 GIEFKCMSFTNLRKFNIKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXD 737
G EF F + + C +T + + H L + A +F +
Sbjct: 648 GPEFLIPEFYASKGIIHQKSCVETPQQNGRVERKHQH-------ILNVARALLFQSKLPN 700
Query: 738 CTQCSXLIESLLLK-------LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKL 790
+I ++ L + +SPYQ LY LPD KVF L +A+TL + R KL
Sbjct: 701 FFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSKL 760
Query: 791 DPRVRKSIFL 800
R RKSIF
Sbjct: 761 QSRARKSIFF 770
>IMGA|Medtr7g126870.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 29583401-29584363 H
EGN_Mt090430 20090702
Length = 302
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 143/245 (58%), Gaps = 38/245 (15%)
Query: 24 YFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYSTX 83
Y +H NENP V+V+P+L G+NY SW++++++AL SK K+ F+NG++P P D
Sbjct: 30 YSMHPNENPDAVLVTPLLSGNNYHSWSRSMQVALRSKHKLHFINGTLPRPCDDDHDSIAW 89
Query: 84 ERCNTMILSWITKYI----------MDXXGIXCMEXFARSFPSRXCITNLKSPRRNFXFK 133
+RC +MI+SW++ Y+ MD +E I N R F
Sbjct: 90 DRCKSMIMSWLSNYVDPEISQSILWMDT----ALE-----------IWNELKER----FY 130
Query: 134 QGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLN 193
QG+ S+ Y+T++K LW EL NFRPIPT + C AI + + ++D VIRFL+GLN
Sbjct: 131 QGESSISSYYTKMKKLWQELDNFRPIPTSNCVD--DCKAIAKMREYKDSDQVIRFLRGLN 188
Query: 194 DQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTSESKAL--LNKSFRPNTSFNNS 251
+Q+ V+SQ M++D LPS+ K +SL++QQERQ++ ESK L N SF S N S
Sbjct: 189 EQFLAVRSQIMLMDPLPSIGKVYSLLVQQERQVV-VPLDESKLLDVSNNSF----SGNPS 243
Query: 252 YGNKN 256
YG N
Sbjct: 244 YGRGN 248
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 191/400 (47%), Gaps = 58/400 (14%)
Query: 614 LIANEFGGHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTF 670
L N GH FL TIVDDH RFLWI L+K+K+ V ++ FI IE +T
Sbjct: 577 LAINYVHGHKYFL-------TIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITP 629
Query: 671 MQVRTDNGIEFKCMSFTNLRKFNIKLLCRDTSTER-----------NCXKEALAHPKCDX 719
+RTDNG EF F + + C +T + N + L K
Sbjct: 630 KIIRTDNGSEFLLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSK--- 686
Query: 720 IIALPIPF-AQIFLVLCXDCTQCSXLIESL-LLKLQNESPYQKLYHKLPDYQELKVFVYL 777
LP+ F + FL LI + L LQN+SPYQ LY PD KVF L
Sbjct: 687 ---LPLSFWSYAFL-------HAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCL 736
Query: 778 AYATTLSSHRQKLDPRVRKSIFLGFKPSTKGYLLMDLKNRKMFSSQHVIFYENHFPFINP 837
YA++L SHR KL+ R RKS+FLG+K KG +L DL R++F S+HV+F+E P+ +
Sbjct: 737 CYASSLQSHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHECVLPYKSN 796
Query: 838 LSP-THNFSKLT-ISTFTSYPTADLFDPYPTSTVHSXTIQPLVSS---------NSPPLL 886
SP +H++ T ST P+ P+ T I P S + PP L
Sbjct: 797 SSPQSHDWEYFTSFSTPLDLPSGTDTSPHSAIT----DIVPYTSPTPTSTSSIIDIPPPL 852
Query: 887 YHLNPKEXEEPHNTLKITIVIXPQQILHXTAPLNTL--LSAVISXQHISPSHFHFISNIT 944
+ + P + LK I +A +N+L +S +S +IS SH HFI ++
Sbjct: 853 PTRHSSRNKTPPSYLKDFICANKS-----SASVNSLHSISNFVSYHNISNSHSHFILSLH 907
Query: 945 SIVETKSYXEAVKHQVWRDAMSAELEALNETQTWTLVTFP 984
+ E KSY EA K + WR AM EL AL T TW ++ P
Sbjct: 908 AHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLP 947
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 53 IKMALISKKKMVFVNGSMPPPSXADLRYSTXERCNTMILSWITKYIMDXXGIXCM----- 107
+K AL +K K+ F+NG++ P DL + ERCN +I SWI + D +
Sbjct: 1 MKRALGAKNKLAFINGTIQQPEALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHDYA 60
Query: 108 --------EXFARSFPSRXCITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPI 159
E F+++ R I+ L+S N KQG +V EYFT+++ LW+EL + RP+
Sbjct: 61 SDVWEDLKERFSKA--DRIRISTLRSSINNL--KQGGKTVSEYFTEMRSLWEELNSHRPL 116
Query: 160 PTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLV 219
P CS C C A + + D +++FL GLNDQ++ VK+Q +++D LPS+NK +SLV
Sbjct: 117 PNCSCVHQCRCEASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDPLPSLNKVYSLV 176
Query: 220 IQQERQ---LLYTSTSESKALLNKSFRPNTSFNNSYGNKNG 257
IQ+E +L T ES L+N T SYG G
Sbjct: 177 IQEESNHTPILSLPTEESNILVNA-----TDSKKSYGRGKG 212
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 156 bits (394), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 134/262 (51%), Gaps = 36/262 (13%)
Query: 22 NPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYS 81
+PYF+H +EN + V V+P L G NY SW+ ++ AL K K FV+GS+P P DL
Sbjct: 17 DPYFVHSSENSSTVSVTPQLTGENYHSWSMKMRRALAMKNKYKFVDGSIPIPDEDDLNRP 76
Query: 82 TXERCNTMILSWITKYIM------------------DXXGIXCMEXFARSFPSRXCITNL 123
ERCN ++ +WI I D + F R R + L
Sbjct: 77 AWERCNNLVHTWIINSISPSIAHSVVFIEHAIDMWND-----LKDRFMRGDRIR--VAQL 129
Query: 124 KSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMEND 183
N KQG + +YFT+L+ LW+EL +RP+P C+ PC+C A+ K F D
Sbjct: 130 HQEIANL--KQGDHKITDYFTELRGLWEELDQYRPMPQCTCPMPCTCLAMRNAKGFRAED 187
Query: 184 CVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTSESKALLNKSFR 243
VI+FL GLN++Y V SQ +++D +P +N+ FSLV+QQER+L Y S + N S
Sbjct: 188 RVIQFLIGLNEEYQGVASQVLLMDPMPPINRVFSLVMQQERKLQYAVVSH---VQNTSLE 244
Query: 244 PNTSFNNS------YGNKNGTT 259
NT N+ +G G T
Sbjct: 245 DNTGLVNAVNGQKQFGRGRGGT 266
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 34/198 (17%)
Query: 621 GHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIE---TLTFMQVRTDN 677
GH FL TI+DD R +WI ++K KS V+ F+ +E +R+DN
Sbjct: 609 GHKYFL-------TILDDCTRHVWIVMLKNKSEASYQVKNFVSMVERQFERKIKMIRSDN 661
Query: 678 GIEFKCMSFTNLRKFNIKLLC-----RDTSTER------NCXKEALAHPKCDXIIALPIP 726
G EF F + + + C ++ ER N + + K LP
Sbjct: 662 GPEFMLREFYDKKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSK------LPKN 715
Query: 727 FAQIFLVLCXDCTQCSXLIESLLLK-LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSS 785
F + VL LI + K L N+S Y+ LY+++PD LKVF L+YA+TL
Sbjct: 716 FWS-YAVL-----HAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPV 769
Query: 786 HRQKLDPRVRKSIFLGFK 803
+R K DP+ RK FLGFK
Sbjct: 770 NRYKFDPKARKCAFLGFK 787
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 155 bits (393), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 128/213 (60%), Gaps = 17/213 (7%)
Query: 24 YFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYSTX 83
+F+H +E P + ++P GSNY++W++ ++ +L +K K+ F+NGS+P P DL +
Sbjct: 15 FFVHPSEGPNSLSITPKFNGSNYIAWSRTVERSLGTKNKLGFINGSIPMPDEDDLNRTAW 74
Query: 84 ERCNTMILSWITKYIMDXXG---IXC----------MEXFARSFPSRXCITNLKSPRRNF 130
ERCN ++ SW+ + + + C E F++ R I NL+S N
Sbjct: 75 ERCNHLVQSWLINSVSESIAQTIVFCDSALEVWLDLKERFSKI--DRIRIANLRSNINNL 132
Query: 131 XFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLK 190
KQG V++YFT++K LW+EL + RPIP CS PC C A V K D +++FL
Sbjct: 133 --KQGSKFVLDYFTEIKSLWEELSSHRPIPNCSCIHPCRCAASKVAKIHRNEDQIMQFLT 190
Query: 191 GLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQE 223
GLNDQ++ V++Q ++LD LPSMNK +SLV+Q+E
Sbjct: 191 GLNDQFSVVRTQVLLLDPLPSMNKVYSLVVQEE 223
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 621 GHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDN 677
GH FL TI+DDH RFLW+ L+K K+ V S V+ FI I+ T +RTDN
Sbjct: 532 GHRYFL-------TILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFIRTDN 584
Query: 678 GIEFKCMSF 686
G EF SF
Sbjct: 585 GPEFMLPSF 593
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 137/234 (58%), Gaps = 17/234 (7%)
Query: 12 MVNDHLQNPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMP 71
MV + + + +++H +E P V++SP L GSNYL+W++++ A +K K+ F++GSM
Sbjct: 1 MVRQNQPDTESVFYVHPSEGPNSVLISPPLDGSNYLAWSRSMIRAFGAKNKLKFIDGSME 60
Query: 72 PPSXADLRYSTXERCNTMILSWITKYIMDXXGIXCM-------------EXFARSFPSRX 118
P DL + ERCN ++ SWI + + E F+++ R
Sbjct: 61 IPDEDDLNRNAWERCNHLVQSWIINSVSPQIAQTLVFHENAIDAWSDLKERFSKADIIR- 119
Query: 119 CITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKT 178
I +L+S N KQG SV+EYFT++K LW+EL + RP+P C+ PC C A+ +
Sbjct: 120 -IASLRSKINNM--KQGFKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCAAMREARC 176
Query: 179 FMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTS 232
+ D VI+FL GLNDQ+ VK+Q +MLD LPS+NK +SLV+Q+E L ++S
Sbjct: 177 YRLEDQVIQFLTGLNDQFNVVKTQVLMLDPLPSINKVYSLVVQEESNNLSLTSS 230
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 181/390 (46%), Gaps = 64/390 (16%)
Query: 634 TIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDNGIEFKCMSFTNLR 690
TI+DD+ R++WI L+K+KS V V+ FI I+T +T VR+DNG EF SF +
Sbjct: 570 TILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFLLHSFYASK 629
Query: 691 KFNIKLLCRDTSTER-----------NCXKEALAHPKCDXIIALPIPFAQIFLVLCXDCT 739
C +T + N + L K LP+ + L+
Sbjct: 630 GIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQSK------LPVSYWSYALL------ 677
Query: 740 QCSXLIESLLLK-LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSI 798
+ +I + L N+SPYQ L+ +P KVF L Y+TTL SHR KL R RKS+
Sbjct: 678 HATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKSV 737
Query: 799 FLGFKPSTKGYLLMDLKNRKMFSSQHVIFYENHFPFINPLSPTHNFSKLTISTFTSYPTA 858
FLG+ KGY+L+D+ R++ S+HV FYE+ P+ P + + +I+T Y ++
Sbjct: 738 FLGYTVGFKGYVLLDIHTREIHISRHVQFYEHILPY--PATSS------SITTAWEYFSS 789
Query: 859 DLFDPYPTSTVHSXTIQPLVSSNSPPLLYHLN--PKEXEEPHNTLKITIVIXPQQILHXT 916
D S+ + + P+ +SPP ++ P + E P +++ ++ + T
Sbjct: 790 DT-----CSSSNPNSDTPITLPSSPPPFIDVDIPPTDHEHPISSIPSPSPPIIRKSIRNT 844
Query: 917 AP--------LNTLLSAVI--------------SXQHISPSHFHFISNITSIVETKSYXE 954
P NT ++V+ S ++S SH F ++ S E +Y E
Sbjct: 845 HPPTHLQDYVCNTSTASVLSDNSFVHHPISHYYSYNNLSSSHCAFAMSLDSHTEPTTYAE 904
Query: 955 AVKHQVWRDAMSAELEALNETQTWTLVTFP 984
A K W AM EL AL T TW LV P
Sbjct: 905 ASKFDCWNQAMKVELSALENTGTWRLVDLP 934
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 132/221 (59%), Gaps = 22/221 (9%)
Query: 21 SNP-----YFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSX 75
SNP +F+H +E+P + ++P L GSNY++W++ ++ +L +K K+ F+NGS+P P
Sbjct: 6 SNPDTESVFFVHPSESPNSLSITPKLTGSNYIAWSRTVERSLGTKNKLGFINGSIPMPDE 65
Query: 76 ADLRYSTXERCNTMILSWITKYIMDXXG---IXC----------MEXFARSFPSRXCITN 122
DL + ERCN ++ SW+ + D + C E F++ R I N
Sbjct: 66 DDLNRAAWERCNHLVQSWLINSVSDSIAPTVVFCDTALEVWLDLKERFSKI--DRIRIAN 123
Query: 123 LKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMEN 182
L+S N KQG +V++YFT++K LW+EL + RPIP C C C A + KT
Sbjct: 124 LRSSINNL--KQGAKTVLDYFTEMKSLWEELSSHRPIPNCVCVHQCRCLASRIAKTHRNE 181
Query: 183 DCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQE 223
D +++FL LNDQ++ V++Q ++LD LPS+NK +SLV+Q+E
Sbjct: 182 DQIMQFLTSLNDQFSVVRTQVLLLDPLPSLNKVYSLVVQEE 222
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 168/360 (46%), Gaps = 25/360 (6%)
Query: 637 DDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDNGIEFKCMSFTNLRKFN 693
+DH RFLWI L+K K+ V + V+ FI I+ T +RTDNG EF + +
Sbjct: 582 NDHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTTPKFIRTDNGPEFMLSTLYSSHGII 641
Query: 694 IKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXDCTQCSXLIESLLL--- 750
+ C +T + + H L + A ++ C + ++ L
Sbjct: 642 HQKSCVETPQQNGRVERKHQH-------ILNVGRALLYQSKLPPAYWCYAIQHAVFLINR 694
Query: 751 ----KLQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFKPST 806
L N+SPY L+HKLPD KVF L YA+TL SH KL R RKSIF+G++
Sbjct: 695 VPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHTTKLKHRARKSIFIGYQSGY 754
Query: 807 KGYLLMDLKNRKMFSSQHVIFYENHFPFINPLSPTHNFSKLTISTFTSYPTA-DLFDPYP 865
KG+ L DL +R++F S+HV F+EN P+ + S T + S F P A +L P
Sbjct: 755 KGFTLYDLHSREIFISRHVTFHENFLPYPHTSSSTSPDWQY-FSYFHPTPVAPNLPSPPI 813
Query: 866 TSTVHSXTIQPLVSSNSPPLLYHLNPKEXEEPHNTLKITIVIXPQQ-ILHXTAPLNTLLS 924
+ + + + + P+ H+T +T Q I + ++
Sbjct: 814 IDDIIAPDHPSPDPTPPTSPILPIVPR-----HSTRNVTAPSYLQDYICNNIHAFTYPIT 868
Query: 925 AVISXQHISPSHFHFISNITSIVETKSYXEAVKHQVWRDAMSAELEALNETQTWTLVTFP 984
+S H+S S F+ ++ + E KSY EA K W+ AM EL+AL +T TW LV P
Sbjct: 869 HSLSHHHLSNSRSFFVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLP 928
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 136/234 (58%), Gaps = 17/234 (7%)
Query: 12 MVNDHLQNPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMP 71
M + Q+ + +++H +E P V+V+P+L G+NYL+W++++ A + K K+ FV+G M
Sbjct: 1 MPRQNQQDTESVFYVHPSEGPNSVLVTPLLDGTNYLAWSRSMIRAFVVKNKLKFVDGYME 60
Query: 72 PPSXADLRYSTXERCNTMILSWITKYIMDXXGIXCM-------------EXFARSFPSRX 118
P DL S ERCN +I SWI + + E F+++ R
Sbjct: 61 IPDEDDLNRSAWERCNHLIQSWIINSVSPPIAQTLVFHENAVDGWSDLKERFSKADKIR- 119
Query: 119 CITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKT 178
I +L+S N KQG SV+EYFT++K LW+EL + RP+P C+ PC C A+ +
Sbjct: 120 -IASLRSKINNM--KQGSKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCAAMRETRQ 176
Query: 179 FMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTS 232
+ D V++FL GLNDQ+ VK+Q +MLD +PS+N+ + LV+Q+E L ++S
Sbjct: 177 YRIEDQVMQFLIGLNDQFNVVKTQILMLDPIPSINRVYYLVVQEESNNLSLASS 230
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 176/373 (47%), Gaps = 37/373 (9%)
Query: 634 TIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDNGIEFKCMSFTNLR 690
TI+DD+ F WI L+K+K V V+ FI I T +T VR+DNG EF SF +
Sbjct: 562 TILDDYSIFFWIVLLKSKYEVSQHVKNFINLIHTQYHITPKVVRSDNGPEFLLNSFYASK 621
Query: 691 KFNIKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXDCTQCSXLIESLLL 750
C +T + + H L + A +F L+ ++ +
Sbjct: 622 GIVHHKSCVETPQQNGRVERKHQH-------ILNVGRALLFQSKLPSSYWSYALLHAIFI 674
Query: 751 -------KLQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFK 803
L N+SPYQ L+ +PD Q KVF L Y+TTL SHR KL R RK++FLG+
Sbjct: 675 INRVTSPTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKLSARARKTVFLGYA 734
Query: 804 PSTKGYLLMDLKNRKMFSSQHVIFYENHFPFINPLSPTHNFSKLTISTFTSYPTAD---L 860
KGY+L+D+ R++ S+HV F+E+ P+ P +P+ TI+T Y ++D
Sbjct: 735 VGYKGYVLLDIHTREIHISRHVQFHEHILPY--PTNPS------TITTTWDYFSSDSCSA 786
Query: 861 FDPYPTSTVHSXTIQPLVSS-NSPPLLYHLNPKEXEEPHNTLKITIVIXPQQILH----- 914
+P P S+ S I P ++PP + + +P K + + P L
Sbjct: 787 SNPLPKSSTISPIIPPPFIDVDTPPSDDNHSVSPIPQPPVIRKSSRITQPPTHLQDYVCS 846
Query: 915 ---XTAPLNTLLSAVISXQHISPSHFHFISNITSIVETKSYXEAVKHQVWRDAMSAELEA 971
T+ + +S +S ++S SH F ++ S E +Y EA K W+ AM EL A
Sbjct: 847 VSDDTSFVQYPISHYLSYNNLSSSHCAFALSLDSHTEPTTYAEASKFDCWKQAMQVELSA 906
Query: 972 LNETQTWTLVTFP 984
L T TW LV P
Sbjct: 907 LENTGTWKLVDLP 919
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 132/221 (59%), Gaps = 19/221 (8%)
Query: 18 QNPS--NPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSX 75
Q P +P+++H +E P+ +IVSP L GSNYL+W +++K +L +K K+ F+NGS+ P
Sbjct: 6 QGPDQESPFYVHPSEGPSSLIVSPKLDGSNYLAWNRSMKRSLGTKNKLGFINGSIEQPDL 65
Query: 76 ADLRYSTXERCNTMILSWITKYIMDXXGIXCM-------------EXFARSFPSRXCITN 122
DL S ERCN ++ SWI + D + E F+++ R I N
Sbjct: 66 DDLNRSAWERCNFLVQSWIINSVSDSIAQTVVFYDTAYEVWQDLHERFSKA--DRIRIAN 123
Query: 123 LKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMEN 182
L+S N KQG SV+EYFT+LK LW+EL + RPIP+C C C A V K +
Sbjct: 124 LRSSINNL--KQGAKSVLEYFTELKSLWEELSSHRPIPSCVCVHACRCDATRVAKIYRTE 181
Query: 183 DCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQE 223
D +++FL GLND + VK+Q ++L+ LP +NK +SLV+Q+E
Sbjct: 182 DQIMQFLTGLNDNFGVVKTQVLLLNPLPPLNKVYSLVVQEE 222
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 173/384 (45%), Gaps = 68/384 (17%)
Query: 621 GHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDN 677
GH FL TI+DDH RFLWI L+K+KS V V+ FI I T +T VR+DN
Sbjct: 567 GHRYFL-------TILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQFHVTPKYVRSDN 619
Query: 678 GIEFKCMSFTNLRKFNIKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXD 737
G EF F + + C +T + + H L + A ++
Sbjct: 620 GPEFLLNDFYSSHGIIHQKSCVETPQQNGRVERKHQH-------ILNVGRALLYQSKLPP 672
Query: 738 CTQCSXLIESLLL-------KLQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKL 790
++ ++ L L N+SPY L+HKLPD Q K KL
Sbjct: 673 SFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHKLPDIQLFK---------------SKL 717
Query: 791 DPRVRKSIFLGFKPSTKGYLLMDLKNRKMFSSQHVIFYENHFPFINPLSPTHNFSKLTIS 850
PR RKS+FLG+K KGY L DL R++F S+HVIF+EN P+ T +
Sbjct: 718 QPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENILPY-------------TFT 764
Query: 851 TFTSYPTADLFDPYPTSTVHSXTIQPLVSSNSPP---------LLYHLNPKEXEEPHNTL 901
T ++ P+ D F P T T HS P S S P + HL P+ H+T
Sbjct: 765 TSSTTPSWDYFSPSTTETSHSPNNTPSTPSASLPHTQSSSPSVPVSHL-PR-----HSTR 818
Query: 902 -KITIVIXPQQILHXTAPLNTLLSAVISXQHISPSHFHFISNITSIVETKSYXEAVKHQV 960
KI+ + + +S +S +S H ++ ++ + E K+Y EA KH+
Sbjct: 819 NKISPSYLQDYVCNSINSTTYPISHYLSHNKLSSHHSSYVLSLHTHNEPKTYAEANKHEC 878
Query: 961 WRDAMSAELEALNETQTWTLVTFP 984
W+ AM EL+AL +T TW V P
Sbjct: 879 WQKAMQVELQALEQTGTWNFVDLP 902
>IMGA|Medtr6g069740.1 Zinc finger, C4-type
chr06_pseudomolecule_IMGAG_V3 12973766-12974997 H
EGN_Mt090430 20090702
Length = 366
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 129/218 (59%), Gaps = 13/218 (5%)
Query: 24 YFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYSTX 83
+++H +E P V+V+P L GSNY++W++++ +K K+ F++GSM P DL +
Sbjct: 13 FYVHSSEGPNFVVVAPPLDGSNYIAWSRSMIRDFGAKNKLKFIDGSMEIPDEDDLNRNAW 72
Query: 84 ERCNTMILSWITKYIMDXXGIXCMEXFARSFPSRXCITNLKSPRRNFXFKQGQLSVIEYF 143
ERCN +I SWI I + + + ++LK + +++V+EYF
Sbjct: 73 ERCNHLIQSWIINSI----SLQIAQTLVFHENATDAWSDLKE-------RFAKVTVLEYF 121
Query: 144 TQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQA 203
T++K LW+EL + RP+P C+ PC C A+ + F D VI+FL GLNDQ+ VK+Q
Sbjct: 122 TEIKTLWEELNSHRPMPHCTCPHPCRCAAMREARNFRLEDQVIQFLTGLNDQFNVVKTQV 181
Query: 204 MMLDHLPSMNKFFSLVIQQE--RQLLYTSTSESKALLN 239
+MLD LPS+NK +SLV+Q+E Q L + E +++N
Sbjct: 182 LMLDPLPSINKVYSLVVQEESNNQSLSSPIDEPLSIVN 219
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 18/227 (7%)
Query: 11 KMVNDHLQNPSNPY-FLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGS 69
+++ H+Q + F+H +E ++V+P G+NYL+W+++++ AL +K K+ F+NG
Sbjct: 4 RVIPAHIQQDVDAALFVHPSEGLHSLVVTPKFNGTNYLAWSRSMQRALGAKCKLGFINGE 63
Query: 70 MPPPSXADLRYSTXERCNTMILSWITKYIMDXXG---IXC----------MEXFARSFPS 116
+P P DL + ERCN ++ SWI + + + C E F+++
Sbjct: 64 IPVPDADDLNRTAWERCNHLVQSWILNSLSESIAQTVVFCDSASEVWQDLHERFSKT--D 121
Query: 117 RXCITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVF 176
R I L+S KQG SV++YFT+LK LW+E + PIP C PC C A V
Sbjct: 122 RIRIATLRSSINIL--KQGTKSVLDYFTELKGLWEEFSSHLPIPNCICVHPCRCEATRVA 179
Query: 177 KTFMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQE 223
KT D +++FL GLNDQ++ VK+Q ++LD LPS+NK +S+VIQ+E
Sbjct: 180 KTHRTEDQIMQFLTGLNDQFSVVKTQILLLDPLPSLNKVYSMVIQEE 226
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 24/246 (9%)
Query: 752 LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFKPSTKGYLL 811
L N+SPY L++KLP KVF L YA+TL +HR KL R RKSIFLG++ KGY+L
Sbjct: 540 LHNQSPYLVLHNKLPSLDLFKVFGCLCYASTLQNHRTKLQSRARKSIFLGYQSGYKGYVL 599
Query: 812 MDLKNRKMFSSQHVIFYENHFPFINPLSPTHNFSKLTISTFTSYPTADLFDPYPTSTVHS 871
DL +R++F S+HV F+E P+ H T + + YP++ + + V+
Sbjct: 600 FDLTSREIFISRHVSFHETILPY-------HKNPSSTTADWNYYPSSQSYSHDQSPNVNH 652
Query: 872 XTIQPLVSSNSPPLLY-------------HLNPKEXEEPHNTLKITIVIXPQQILHXTAP 918
P V + P + H++P+ N ++ + + +
Sbjct: 653 QVHIPAVIDDILPSTHVLPPSPPYDSPPIHVSPRR----SNRVRTAPLHLQDYVCNSVHS 708
Query: 919 LNTLLSAVISXQHISPSHFHFISNITSIVETKSYXEAVKHQVWRDAMSAELEALNETQTW 978
LS I+ +IS +H FIS++ + E +Y EA KH W AM AEL AL +T TW
Sbjct: 709 TTYPLSHYINYNNISTNHASFISSLQTTPEPTTYVEASKHDCWNKAMQAELLALEKTGTW 768
Query: 979 TLVTFP 984
+V P
Sbjct: 769 DIVDLP 774
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 135/259 (52%), Gaps = 20/259 (7%)
Query: 13 VNDHLQNPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPP 72
V D Q P N Y++H ++ P+ V ++PVL SNY SWA++++ AL +K K FV+GS+P
Sbjct: 19 VQDPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPV 78
Query: 73 PSXADLRYSTXERCNTMILSWITKYIMDXXGIXCM-------------EXFARSFPSRXC 119
P+ D + RCN ++ SWI + D + E F++ R
Sbjct: 79 PTDFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIR-- 136
Query: 120 ITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTF 179
I+ L+ F KQ SV E+FT LK+LW+EL + P P C+ C C GV
Sbjct: 137 ISELQC--EIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMC-ITGVMNAK 193
Query: 180 MENDCV--IRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTSESKAL 237
+++ IRFL GLND + V+SQ ++++ LP++NK FS+V+Q ERQ + E +
Sbjct: 194 HQHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTI 253
Query: 238 LNKSFRPNTSFNNSYGNKN 256
L S + GN N
Sbjct: 254 LVNSAGKSQGRGRGNGNSN 272
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 105/213 (49%), Gaps = 17/213 (7%)
Query: 634 TIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDNGIEFKCMSFTNLR 690
T +DD+ RF WI L K KS V VQ FI NIE VRTDNG EF F + +
Sbjct: 613 TALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDFYSSK 672
Query: 691 KFNIKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXDCTQCSXLIESLLL 750
+ C +T + + H L + A +F ++ ++ +
Sbjct: 673 GIEHQTSCVETPQQNGRVERKHQH-------ILNVARALLFQSKLPKIFWSYSVLHAIYI 725
Query: 751 K-------LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFK 803
LQN+SPY Y PD KVF L+YA+TL +HR K D R +K +FLG+K
Sbjct: 726 INRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYK 785
Query: 804 PSTKGYLLMDLKNRKMFSSQHVIFYENHFPFIN 836
KG +L DL ++ +F+S++V ++E+ P+ N
Sbjct: 786 QGIKGAILYDLNHKTIFASRNVTYHEHILPYSN 818
>IMGA|Medtr3g080970.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 19236298-19236945 H
EGN_Mt090430 20090702
Length = 200
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 6/188 (3%)
Query: 24 YFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYSTX 83
+++H +E VIV+P L GSNYL W +++ A K KM F++ SM P+ DL +
Sbjct: 13 FYVHPSEGSNSVIVAPPLDGSNYLGWRRSMVRAFGMKNKMKFIDVSMEIPNEKDLNPNVR 72
Query: 84 ERCNTMILSWITKYIMDXXGIXCMEXFARSFPSRXCITNLKSPRRNFXFKQGQLSVIEYF 143
ERCN +I SWI + + S R I L+S N KQG V++YF
Sbjct: 73 ERCNHLIQSWIINSV----STQIAQTLRFSKIDRIRIATLRSKINNV--KQGSKYVLDYF 126
Query: 144 TQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQA 203
T++K LW+EL + P+P C+ PC C A+ + F+ D VI+FL GLNDQ+ V +Q
Sbjct: 127 TEMKTLWEELNSHHPMPHCTCPHPCRCTAMRETRNFILEDQVIQFLTGLNDQFNVVNTQV 186
Query: 204 MMLDHLPS 211
+MLD LPS
Sbjct: 187 LMLDPLPS 194
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 53 IKMALISKKKMVFVNGSMPPPSXADLRYSTXERCNTMILSWITKYIMDXXGIXCM----- 107
+K AL +K K+ F+NG++ P DL + ERCN +I SWI + D +
Sbjct: 1 MKRALGAKNKLAFINGTIQQPEALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHDYA 60
Query: 108 --------EXFARSFPSRXCITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNFRPI 159
E F+++ R I+ L+S N KQG +V EYFT+++ LW+EL + RP+
Sbjct: 61 SDVWEDLKERFSKA--DRIRISTLRSSINNL--KQGGKTVSEYFTEMRSLWEELNSHRPL 116
Query: 160 PTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLV 219
P CS C C A + + D +++FL GLNDQ++ VK+Q +++D LPS+NK +SLV
Sbjct: 117 PNCSCVHQCRCEASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDPLPSLNKVYSLV 176
Query: 220 IQQERQ---LLYTSTSESKALLNKSFRPNTSFNNSYGNKNG 257
IQ+E +L T ES L+N T SYG G
Sbjct: 177 IQEESNHTPILSLPTEESNILVNA-----TDSKKSYGRGKG 212
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 99/206 (48%), Gaps = 36/206 (17%)
Query: 614 LIANEFGGHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTF 670
L N GH FL TIVDDH RFLWI L+K+K+ V ++ FI IE +T
Sbjct: 577 LAINYVHGHKYFL-------TIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITP 629
Query: 671 MQVRTDNGIEFKCMSFTNLRKFNIKLLCRDTSTER-----------NCXKEALAHPKCDX 719
+RTDNG EF F + + C +T + N + L K
Sbjct: 630 KIIRTDNGSEFLLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSK--- 686
Query: 720 IIALPIPF-AQIFLVLCXDCTQCSXLIESL-LLKLQNESPYQKLYHKLPDYQELKVFVYL 777
LP+ F + FL LI + L LQN+SPYQ LY PD KVF L
Sbjct: 687 ---LPLSFWSYAFL-------HAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCL 736
Query: 778 AYATTLSSHRQKLDPRVRKSIFLGFK 803
YA++L SHR KL+ R RKS+FLG+K
Sbjct: 737 CYASSLQSHRTKLETRARKSVFLGYK 762
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 34/211 (16%)
Query: 24 YFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYSTX 83
YF+H +E P V + K K+ F+NG++P P DL ++
Sbjct: 17 YFVHPSEGPNSVAAA---------------------KNKLSFINGTLPVPDTDDLNHNAW 55
Query: 84 ERCNTMILSWITKYIMDXXGIXCM---------EXFARSFP--SRXCITNLKSPRRNFXF 132
ERCN ++ SW+ + D + E F R I L+S
Sbjct: 56 ERCNHLVHSWLINSVSDSIAQTIVFHDNAFDVWEDLKERFSKVDRIRIARLRSSLNTL-- 113
Query: 133 KQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGL 192
+QG SV++YFT++K LW+EL + RP+P C C C A+ V K++ D +I+FL GL
Sbjct: 114 RQGAKSVLDYFTEMKALWEELHSHRPLPNCHCPFQCKCDAVTVPKSYRVEDQIIQFLTGL 173
Query: 193 NDQYAHVKSQAMMLDHLPSMNKFFSLVIQQE 223
N+Q++ VK+Q +++D LP++NK FSLVIQ+E
Sbjct: 174 NEQFSVVKTQVLLMDPLPTLNKVFSLVIQKE 204
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 621 GHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDN 677
GH FL TIVDDH RFLWI +K KS V V++FI+ ++T +T +R+DN
Sbjct: 540 GHKYFL-------TIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFHVTPKCIRSDN 592
Query: 678 GIEFKCMSFTNLRKFNIKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXD 737
G EF +SF + C +T + + H L + A ++
Sbjct: 593 GPEFLILSFYESLGILHQKSCVETPQQNGRVERKHHH-------ILNVGRALLYQSKLPA 645
Query: 738 CTQCSXLIESLLLK-------LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKL 790
L+ ++ L L+ +SPY L+HK PD K +
Sbjct: 646 SYWSYALLHAVFLINRKPTPLLEGQSPYYALHHKFPDIDTFK---------------NQA 690
Query: 791 DPRVRKSIFLGFKPSTKGYLLMDLKNRKMFSSQHVIFYENHFPF 834
R RK++FLG+K KG++L+D+ +R++F S+HV+F+E P+
Sbjct: 691 STRARKTVFLGYKSGYKGFILLDIHSREIFVSRHVVFHEYFLPY 734
>IMGA|Medtr3g019580.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 4112343-4111299 H
EGN_Mt090430 20090702
Length = 334
Score = 120 bits (301), Expect = 5e-27, Method: Composition-based stats.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 29/195 (14%)
Query: 53 IKMALISKKKMVFVNGSMPPPSXADLRYSTXERCNTMILSWITKYI-------------- 98
++ AL K K FV+GS+ P DL + ERCN ++ +WI I
Sbjct: 3 MRRALAMKNKFKFVDGSIEVPDEHDLNRAAWERCNNLVHTWIINSISPSIAQSVVFIENA 62
Query: 99 MDXXGIXCM-----EXFARSFPSRXCITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDEL 153
MD M + F R R + L+ N KQG V EYFT+L+ LW+EL
Sbjct: 63 MD------MWNDLKDRFMRG--DRIRVAQLQQEISNL--KQGSKKVTEYFTELRGLWEEL 112
Query: 154 LNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMN 213
+RP+P C+ PCSC A+ K F D +I+FL GLN++Y V SQ +++D LP +N
Sbjct: 113 DQYRPMPHCTCPIPCSCLAMRNAKGFRLEDRIIQFLIGLNEEYQSVTSQVLLMDPLPQIN 172
Query: 214 KFFSLVIQQERQLLY 228
+ FS+++QQER+ Y
Sbjct: 173 RVFSMIMQQERKAQY 187
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 41/246 (16%)
Query: 13 VNDHLQNPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPP 72
V D Q P N Y++H ++ P+ V ++PVL SNY SWA++++ AL +K K FV+GS+P
Sbjct: 19 VQDPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPV 78
Query: 73 PSXADLRYSTXERCNTMILSWITKYIMDXXGIXCMEXFARSFPSRXCITNLKSPRRNFXF 132
P+ D + RCN ++ SWI + D
Sbjct: 79 PTDFDPNFKAWNRCNMLVHSWIMNSVED-------------------------------- 106
Query: 133 KQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCV--IRFLK 190
S+ + LK D L + P P C+ C C GV +++ IRFL
Sbjct: 107 -----SIAQSIVFLKNAID-LEAYLPTPVCACPHRCMC-ITGVMNAKHQHEITRSIRFLT 159
Query: 191 GLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTSESKALLNKSFRPNTSFNN 250
GLND + V+SQ ++++ LP++NK FS+V+Q ERQ + + +L S +
Sbjct: 160 GLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVDDSTILVNSAGKSQGRGR 219
Query: 251 SYGNKN 256
GN N
Sbjct: 220 GNGNSN 225
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 105/213 (49%), Gaps = 17/213 (7%)
Query: 634 TIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTFMQVRTDNGIEFKCMSFTNLR 690
T +DD+ RF WI L K KS V VQ FI NIE VRTDNG EF F + +
Sbjct: 543 TALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDFYSSK 602
Query: 691 KFNIKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXDCTQCSXLIESLLL 750
+ C +T + + H L + A +F ++ ++ +
Sbjct: 603 GIEHQTSCVETPQQNGRVERKHQH-------ILNVARALLFQSKLPKVFWSYSVLHAIYI 655
Query: 751 K-------LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFK 803
LQN+SPY Y PD KVF L+YA+TL +HR K D R +K +FLG+K
Sbjct: 656 INRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYK 715
Query: 804 PSTKGYLLMDLKNRKMFSSQHVIFYENHFPFIN 836
KG +L DL ++ +F+S++V ++E+ P+ N
Sbjct: 716 QGIKGAILYDLNHKTIFASRNVTYHEHILPYSN 748
>IMGA|Medtr7g045780.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 11034924-11036399 H
EGN_Mt090430 20090702
Length = 491
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 53 IKMALISKKKMVFVNGSMPPPSXADLRYSTXERCNTMILSWITK--------------YI 98
+K AL +K K+ F+NG + P DL + ERCN +I SWI Y
Sbjct: 1 MKRALGAKNKLAFINGIIQQPEALDLNRAAWERCNHLIHSWIINSVSESIAQNIVFHDYA 60
Query: 99 MDXXGIXCMEXFARSF--PSRXCITNLKSPRRNFXFKQGQLSVIEYFTQLKILWDELLNF 156
+D E F R I+ L S N KQG +V EYFT+++ LW+EL +
Sbjct: 61 LD-----VWEDLKERFSKADRIRISTLCSSINNL--KQGGKTVSEYFTEMRSLWEELNSH 113
Query: 157 RPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFF 216
RP+P CS C C A + D +++FL GLNDQ++ VK+Q +++D LPS+NK +
Sbjct: 114 RPLPNCSCIHRCCCEASTRAHVYRVEDQIMQFLIGLNDQFSIVKTQILLMDPLPSLNKVY 173
Query: 217 SLVIQQERQ---LLYTSTSESKALLNKSFRPNTSFNNSYGNKNG 257
SLVIQ+E +L ES L+N + SYG G
Sbjct: 174 SLVIQEESNHAPILSLPADESNILVNVA-----DSKKSYGRGKG 212
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 100/204 (49%), Gaps = 38/204 (18%)
Query: 634 TIVDDHIRFLWIFLMKAKSXVRSLVQAFI---QNIETLTFMQVRTDNGIEFKCMSFTNLR 690
TIVDDH RFLW L K KS V S +Q FI QN +T +R+DNG F +F +
Sbjct: 523 TIVDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNKHKVTPKIIRSDNGHVFLLSAFYASQ 582
Query: 691 KFNIKLLCRDTSTERNCXKEALAHPKCDXIIALPIPFAQIFLVLCXDCTQCSXLIESLLL 750
+ C +T P +FL+ L
Sbjct: 583 GIIHQRSCVET------------------------PQHNVFLI-----------NRVPTL 607
Query: 751 KLQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFKPSTKGYL 810
L+N+SPYQ LY LPD KVF L YA+TL SHR KL R RKS+FLG+K KG
Sbjct: 608 VLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKSVFLGYKSGYKGSF 667
Query: 811 LMDLKNRKMFSSQHVIFYENHFPF 834
L DL +++F S++V F+E+ P+
Sbjct: 668 LYDLNTKEIFMSRNVTFHESILPY 691
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 42/227 (18%)
Query: 19 NPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADL 78
N +PY++H +ENP +K K+ FV+GS+ P DL
Sbjct: 13 NTDSPYYMHPSENPGSC-----------------------AKNKLSFVDGSILIPPLDDL 49
Query: 79 RYSTXERCNTMILSWITKYIMDXXGIXCMEXFARSFPSRXCITNLKSPRRNFXFKQGQLS 138
S ERCN++I SWI + E F++ R I++L + N KQG
Sbjct: 50 NRSVWERCNSLIHSWILNSLQ--------ERFSKVDRVR--ISSLCTTINNL--KQGTKF 97
Query: 139 VIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAH 198
V+EYFT+LK LW+EL + P+P C+ PC C ++ + F D +I+FL GLND +
Sbjct: 98 VLEYFTELKSLWEELNSHCPMPMCTCPHPCRCESMRSARNFRLEDQIIQFLTGLNDNFGV 157
Query: 199 VKSQAMMLDHLPSMNKFFSLVIQQERQ----LLYTSTSESKALLNKS 241
VK+Q ++ + S+NK +SLVIQ+E +S +S L+N S
Sbjct: 158 VKTQVVIQE---SINKIYSLVIQEESNNSVVTASSSIEDSNILVNAS 201
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 115/237 (48%), Gaps = 36/237 (15%)
Query: 614 LIANEFGGHCQFLLYTDKATTIVDDHIRFLWIFLMKAKSXVRSLVQAFIQNIET---LTF 670
L N GH FL TIVDDH RFLWI L+K K+ V ++ FI IE +T
Sbjct: 51 LAINSIHGHKYFL-------TIVDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQFHVTP 103
Query: 671 MQVRTDNGIEFKCMSFTNLRKFNIKLLCRDT-----STER------NCXKEALAHPKCDX 719
+RTDNG EF F + + C +T ER N + L K
Sbjct: 104 KIIRTDNGSEFLLHEFYASKGILHQSSCVETPQQNGRVERKHQHILNIGRALLYQSK--- 160
Query: 720 IIALPIPF-AQIFLVLCXDCTQCSXLIESLLLK-LQNESPYQKLYHKLPDYQELKVFVYL 777
LP+ F + FL LI + L N SPY LY PD KVF L
Sbjct: 161 ---LPLSFWSYAFL-------HAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVFGCL 210
Query: 778 AYATTLSSHRQKLDPRVRKSIFLGFKPSTKGYLLMDLKNRKMFSSQHVIFYENHFPF 834
YA++L SH KL+ R RKS+FLG+K KGY+L DL R++F S+HV+F+E P+
Sbjct: 211 CYASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPY 267
>IMGA|Medtr7g123950.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 29015812-29013196 E
EGN_Mt090430 20090702
Length = 302
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 27/220 (12%)
Query: 22 NPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYS 81
+P LH ++ P + +V+ L G NY W++++ ++L +K K+ ++G++ PS D +
Sbjct: 33 DPLLLHHSDTPGISLVNQPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAPSADDPKLP 92
Query: 82 TXERCNTMILSWITKYIMDXXGIXCM-------------EXFARSFPSRXCITNLKSPRR 128
+RCN ++L+WI I + + F++ SR I ++
Sbjct: 93 LWKRCNDLVLTWILHSIEPDIARSVIFSDTAAAVWSDLHDRFSQGDESR--IYQIRQEIS 150
Query: 129 NFXFKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATP--CSCGAIGVFKTFMENDCVI 186
+QG L + +Y+T+LK LWDEL SY P CSC + E + V+
Sbjct: 151 EC--RQGSLLISDYYTKLKSLWDEL--------GSYQEPITCSCDMLKKVAVREEKEKVM 200
Query: 187 RFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQL 226
+FL GLN+ Y+ V+ +M++ LP K L++QQERQ+
Sbjct: 201 QFLMGLNESYSQVRGSILMMNPLPDTRKVHGLILQQERQM 240
>IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr03_pseudomolecule_IMGAG_V3
16240238-16240810 H EGN_Mt090430 20090702
Length = 147
Score = 102 bits (255), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/97 (45%), Positives = 66/97 (68%)
Query: 132 FKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKG 191
KQG V E+FT L+ LW+EL +RP+P C+ C+C A+ K+F+ D +I+FL G
Sbjct: 48 LKQGSKKVTEFFTNLRGLWEELDQYRPMPQCTCPIQCTCLAVRNNKSFIAEDRIIKFLMG 107
Query: 192 LNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLY 228
LN+ Y V SQ +++D LP +N+ FS+V+QQER++ Y
Sbjct: 108 LNEDYQGVTSQVLLMDPLPQINRVFSMVMQQERKMQY 144
>IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related
chr05_pseudomolecule_IMGAG_V3 33221869-33220686 H
EGN_Mt090430 20090702
Length = 369
Score = 99.4 bits (246), Expect = 1e-20, Method: Composition-based stats.
Identities = 74/258 (28%), Positives = 125/258 (48%), Gaps = 36/258 (13%)
Query: 16 HLQNPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSX 75
H S+PY+L ++NP +V+ VL G NY +W++++K AL +K K+ F++G++ P
Sbjct: 35 HAIYSSSPYYLGSSDNPGTPLVAAVLNGENYRTWSRSMKTALQAKLKLGFIDGTITKPGM 94
Query: 76 ADLRYSTXERCNTMILSWI---TKYIMDXXGIXCMEXFARSFPSRXCITNLK-------S 125
Y ER ++M+ +WI T ++ + + +R +L+ +
Sbjct: 95 KTTNYVNWERADSMVTAWIINATDPVLH-------SSISHASTARDIWLDLEERFAQTNT 147
Query: 126 PR-----RNFXFKQ--GQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKT 178
PR RN Q +LSV ++TQ K L DEL +P+P C+CGA
Sbjct: 148 PRIHQLWRNLCLMQEDDELSVTAFYTQFKSLLDELSELQPLPE------CTCGASKELMR 201
Query: 179 FMENDCVIRFLKGL-NDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTSESKAL 237
E + FL L N++Y HVK+ + ++ LPS+ + F+ V+++E K
Sbjct: 202 MEEEQRLHLFLGSLDNEKYGHVKTSILNVEPLPSLRRAFNHVLREEAHF-----PVEKEK 256
Query: 238 LNKSFRPNTSFNNSYGNK 255
N P T+F++ NK
Sbjct: 257 GNNKMDPGTAFHSYSENK 274
>IMGA|Medtr8g005190.1 Integrase, catalytic region, related
chr08_pseudomolecule_IMGAG_V3 117969-116692 E
EGN_Mt090430 20090702
Length = 237
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 146 LKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMM 205
+KI+WDEL + RP P+C A PCSC +T+ N+ ++ FLKGLND Y +V++Q ++
Sbjct: 1 MKIIWDELEDLRPTPSCVCAIPCSCKLSTSVRTYKNNEYILCFLKGLNDNYTNVRTQILL 60
Query: 206 LDHLPSMNKFFSLVIQQE 223
+D LPS++K +SLVIQQ+
Sbjct: 61 MDPLPSISKTYSLVIQQD 78
>IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG_V3
33350941-33351963 H EGN_Mt090430 20090702
Length = 326
Score = 89.7 bits (221), Expect = 9e-18, Method: Composition-based stats.
Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 48/257 (18%)
Query: 16 HLQNPSNPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSX 75
H + S+PY+L ++NP +V+ VL G NY +W++++K AL +K K+ F++G++ P
Sbjct: 27 HAIDSSSPYYLGSSDNPGTPLVAAVLNGENYRTWSRSMKTALRAKLKLGFIDGTITKPGM 86
Query: 76 ADLRYSTXERCNTMILSWITKYIMDXXGIXCMEXFARSFPSRXCITNLKSPRRNFXFKQG 135
Y ER ++M+ +WI + P + S R+
Sbjct: 87 KTTNYVNWERADSMVTAWIIN---------------ATDPVLHSSISHASTTRDI----- 126
Query: 136 QLSVIEYFTQ-----LKILW---------DE--LLNFRPIPTCSYATPCSCGAIGVFKTF 179
L + E F Q + LW DE L +P+P C+CGA
Sbjct: 127 WLDLEERFAQTNAPRIHQLWRNLCLMQKDDELSLSELQPLPE------CTCGASKELMRR 180
Query: 180 MENDCVIRFLKGL-NDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQLLYTSTSESKALL 238
E C+ FL L N++Y HVK+ + ++ LPS+ + F+ V+++E + +T E
Sbjct: 181 EEEQCLHLFLGSLDNEKYGHVKTSILNVEPLPSLRRAFNHVLREEAR--FTVEKEKG--- 235
Query: 239 NKSFRPNTSFNNSYGNK 255
N P T+F++ GNK
Sbjct: 236 NNKMDPGTAFHSYSGNK 252
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%)
Query: 752 LQNESPYQKLYHKLPDYQELKVFVYLAYATTLSSHRQKLDPRVRKSIFLGFKPSTKGYLL 811
L N SPY LY PD KVF L YA++L SHR KL+ R RKS+FLG+K KGY+L
Sbjct: 92 LHNFSPYHLLYDSPPDITTFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKLGFKGYVL 151
Query: 812 MDLKNRKMFSSQHVIFYENHFPF 834
DL R++F S+HV+F+E P+
Sbjct: 152 YDLHTREIFISRHVVFHECVLPY 174
>IMGA|Medtr5g032700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
13269922-13268996 E EGN_Mt090430 20090702
Length = 213
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 28/172 (16%)
Query: 35 VIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPPSXADLRYSTXERCNTMILSWI 94
V V+ +L SNYL+W+++++ AL +K K+ F++GS+ P+ DL ERC +I SWI
Sbjct: 29 VRVTSLLIESNYLAWSRSMQRALGAKTKLSFIDGSIRVPAIDDLTRGAWERCIHLIHSWI 88
Query: 95 TK--------------YIMDXXGIXCMEXFA----RSFPSRXCITNLKSPRRNFXFKQGQ 136
+++D G + F R R I NLK QG
Sbjct: 89 LNSVSPQISQTIIFHVHVIDF-GKNSKKDFKADSIRVSILRYAINNLK---------QGS 138
Query: 137 LSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRF 188
V++YFT++K LW+EL + RP P C Y PC C A+ + F VI F
Sbjct: 139 KYVLDYFTKMKTLWEELNSQRPTPNCIYIHPCRCDAMCSARIFRLEGQVIHF 190
>IMGA|Medtr5g007330.1 Integrase, catalytic region, related
chr05_pseudomolecule_IMGAG_V3 1052977-1052588 H
EGN_Mt090430 20090702
Length = 129
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 146 LKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMM 205
+KILW EL + RP P+CS PC+C + + +I FLKGLN Y++V++Q ++
Sbjct: 1 MKILWYELEDLRPTPSCSCVNPCTCSLSNYVHNYKNMEYIICFLKGLNANYSNVRTQILL 60
Query: 206 LDHLPSMNKFFSLVIQQERQLLYTSTSESKALLNKSFRPNTSFNNSYGNKNG 257
+D LPS++K +S V QQ + + +S A+ P N S G G
Sbjct: 61 MDPLPSISKVYSSVSQQG----FNHSDDSTAVSINYTNPKNLSNQSKGRGKG 108
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 31/234 (13%)
Query: 786 HRQKLDPRVRKSIFLGFKPSTKGYLLMDLKNRKMFSSQHVIFYENHFPFINPLSPTHNFS 845
HR K DP+ +F+G+ +TKGY +++L +K+ S+ VIF+E FPF PTH F
Sbjct: 153 HRTKFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRDVIFHETIFPFAMSKDPTH-FP 211
Query: 846 KLTIS--TFTSYPTADLFDPY-------------PTSTVHSXTIQPLVSSNSPPLLY--- 887
K + YPT+ Y P ++ I P S++ P L
Sbjct: 212 KFPFHCVSLHDYPTSYDDQDYSSKETTTSPTHITPENSTSPTHITPENSTSIPQLRRSQR 271
Query: 888 -HLNPKEXEEPHNTLKITIVIXPQQILHXTAPLNTLLSAVISXQHISPSHFHF-----IS 941
H P + + + + V Q + PLN L + ++SP F F I
Sbjct: 272 LHKTPTYLTDYVHNVPSSTVSNSQPPQPHSLPLNALFTLK---HYVSPDVFSFDSQSFIM 328
Query: 942 NITSIVETKSYXEAVKHQVWRDAMSAELEALNETQTWTLVTFPLEKLQXATSGC 995
NI+ E SY EA W+ AM+ E AL++ TWTL P +K + GC
Sbjct: 329 NISHDCEPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDK---KSVGC 379
>IMGA|Medtr5g106230.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 42722085-42722450 H
EGN_Mt090430 20090702
Length = 121
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 132 FKQGQLSVIEYFTQLKILWDELLNFRPIPTCSYATPCSCGAIGVFKTFMENDCVIRFLKG 191
FKQG+ V FT LK +WDEL I C + SCG + + + +CV+ L G
Sbjct: 42 FKQGEQYVTNLFTLLKTVWDELEALCRIKDCMCSVKYSCGYLKDIELLRDFECVVNLLNG 101
Query: 192 LNDQYAHVKSQAMMLD 207
L+D Y VKSQ + ++
Sbjct: 102 LSDPYNFVKSQILRME 117
>IMGA|Medtr7g029520.1 Integrase, catalytic region, putative
chr07_pseudomolecule_IMGAG_V3 7424834-7425131 H
EGN_Mt090430 20090702
Length = 74
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 22 NPYFLHLNENPALVIVSPVLFGSNYLSWAKAIKMALISKKKMVFVNGSMPPP 73
+PYF+H ++N + V V+P L G NY +W+ ++ AL K K FV+G++P P
Sbjct: 15 DPYFVHPSKNSSTVSVTPQLNGDNYHAWSMKMRRALAMKNKFKFVDGTIPIP 66
>IMGA|Medtr7g009620.1 Integrase, catalytic region, putative
chr07_pseudomolecule_IMGAG_V3 1805547-1806856 E
EGN_Mt090430 20090702
Length = 94
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 172 AIGVFKTFMENDCVIRFLKGLNDQYAHVKSQAMMLDHLPSMNKFFSLVIQQERQ----LL 227
AI + + D +I+FL LN+ + K Q ++DHLPSMNK + LV+Q+ER L
Sbjct: 22 AILIPHNYRIEDQIIQFLTDLNEHFLVFKIQVFLMDHLPSMNKVYYLVVQEERNNACLPL 81
Query: 228 YTSTSESKALLN 239
T + K L N
Sbjct: 82 LTPVDDPKILFN 93