Jatropha Genome Database

JcCA0078521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078521.10 - phase: 0 /pseudo/partial
         (320 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g097750.1 Aminotransferase, class I and II; chr03_pse...    55   4e-08

>IMGA|Medtr3g097750.1 Aminotransferase, class I and II;
           chr03_pseudomolecule_IMGAG_V3 23509032-23506389 E
           EGN_Mt090430 20090702
          Length = 396

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 20/132 (15%)

Query: 60  GLREALAQDSGL----ESDYILVGICT----------LDPGDKIVDCPPTFTMYQFDAAV 105
            + E   +D+GL    E +  +   CT          ++PGD+++   P +  Y+   ++
Sbjct: 82  AISERYKKDTGLAVDPEKEITVTSGCTEAIAATVLGLINPGDEVIVFAPFYDSYEATLSM 141

Query: 106 NGAEVIKV-LRKPDFSLNVELISDVVRQENPKCIFLTSPNNPDGSIINDEDLLKILDL-- 162
            GA+V  + LR PDF+L +E +   + + N + I L +P+NP G +   E+L  I  L  
Sbjct: 142 AGAKVKGITLRPPDFALPIEELKSTISK-NTRAILLNTPHNPTGKMFTPEELNTIASLCI 200

Query: 163 --PILVVLDEAY 172
              +LV  DE Y
Sbjct: 201 ENDVLVFSDEVY 212