Jatropha Genome Database

JcCA0078491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078491.10 - phase: 0 /partial
         (104 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g124950.1 Thioredoxin domain 2; Thioredoxin fold chr0...    72   1e-13

>IMGA|Medtr3g124950.1 Thioredoxin domain 2; Thioredoxin fold
           chr03_pseudomolecule_IMGAG_V3 31909838-31914027 F
           EGN_Mt090430 20090702
          Length = 249

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 13/97 (13%)

Query: 8   VASTAGGARSLPFQRTLAITSTKFLSRWVSSKMDFNFLQLGCRKNTTLPARKLLIRAART 67
           ++STA    SL   ++ +++   F             L+L  R+  +   R  +IRAAR 
Sbjct: 17  LSSTASSGFSLSLSQSCSVSKPSF------------HLKLNTRRKYSYQTR-FVIRAARI 63

Query: 68  ESQGVFLGFRPPNFELPEPLTGKTWKLDDFESYPALL 104
           ES+ V LGFR P F+L EPLTGK W L+DFE++PALL
Sbjct: 64  ESKSVTLGFRAPQFQLSEPLTGKVWTLEDFEAHPALL 100