Jatropha Genome Database

JcCA0078121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078121.10 + phase: 0 /partial
         (164 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g129740.1 TRAM, LAG1 and CLN8 homology chr04_pseudomo...    59   8e-10

>IMGA|Medtr4g129740.1 TRAM, LAG1 and CLN8 homology
           chr04_pseudomolecule_IMGAG_V3 30931961-30926355 E
           EGN_Mt090430 20090702
          Length = 433

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 13  ENESYPAYEDYIVLPLFALFFPSVRFFLDRFVFEKVAKRLIF-GKGYRTLDVETDERKKK 71
            +   P    + V   FA    + RF LDRFVF ++A R++  GK    ++    E + K
Sbjct: 11  NDNVVPDASHFSVAIYFAFGSLAARFILDRFVFRRLAIRMLTKGKAPSRIN---KEMQVK 67

Query: 72  IRKFKESAWKCVYFLSGEILALTVTYNEPWFTNTKYFWVGPGNQVWPDQKMK 123
           I K  ES WK  Y+ + E   L   Y+EPW TN K F      + WP+ ++K
Sbjct: 68  IAKCTESMWKLTYYATVEAFILKFIYHEPWTTNRKMF-----TEDWPNHELK 114



 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 24/35 (68%)

Query: 130 YMYAAGFYTYSIFALIFWETRRSDFGVTGSHHVAT 164
           YM   GFY YSI A++ WETRR DF V  +HHV T
Sbjct: 197 YMCQCGFYIYSIAAILLWETRRKDFAVMFTHHVIT 231